Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.1e-89 331.6 152 100.0
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.7e-37 158.3 73 98.6
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.1e-37 157.9 72 100.0
SEGI_14065 Sequoiadendron giganteum HOM05D000188 ORTHO05D000362 1.6e-24 116.7 67 79.1
SEGI_32796 Sequoiadendron giganteum HOM05D000246 ORTHO05D009140 5.0e-23 111.7 68 75.0
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 4.2e-22 108.6 76 60.5
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 7.2e-22 107.8 76 61.8
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 9.5e-22 107.5 73 65.8
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.2e-21 107.1 76 61.8
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.1e-21 106.3 69 66.7
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.1e-21 106.3 72 62.5
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 2.8e-21 105.9 73 64.4
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.8e-21 105.9 93 55.9
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 3.6e-21 105.5 76 59.2
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 4.7e-21 105.1 76 64.5
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 4.7e-21 105.1 78 57.7
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 4.7e-21 105.1 113 49.6
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 4.7e-21 105.1 76 63.2
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 6.1e-21 104.8 76 61.8
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 6.1e-21 104.8 76 61.8
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 8.0e-21 104.4 113 48.7
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.0e-20 104.0 76 60.5
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 1.0e-20 104.0 76 63.2
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.4e-20 103.6 70 67.1
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 1.8e-20 103.2 75 61.3
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.8e-20 103.2 76 61.8
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.8e-20 103.2 75 60.0
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.8e-20 103.2 76 57.9
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.8e-20 103.2 76 59.2
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.8e-20 103.2 75 61.3
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.8e-20 103.2 76 60.5
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 2.3e-20 102.8 73 64.4
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.3e-20 102.8 75 60.0
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 2.3e-20 102.8 75 60.0
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.3e-20 102.8 75 58.7
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 2.3e-20 102.8 75 58.7
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.3e-20 102.8 70 61.4
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.3e-20 102.8 74 59.5
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.0e-20 102.4 76 59.2
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 3.0e-20 102.4 70 61.4
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 3.0e-20 102.4 115 46.1
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 3.0e-20 102.4 115 46.1
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 4.0e-20 102.1 76 60.5
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 4.0e-20 102.1 75 57.3
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 4.0e-20 102.1 76 56.6
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 5.2e-20 101.7 75 56.0
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 6.8e-20 101.3 71 66.2
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 8.8e-20 100.9 75 57.3
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 8.8e-20 100.9 76 60.5
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.2e-19 100.5 73 63.0
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.2e-19 100.5 75 60.0
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.5e-19 100.1 75 60.0
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.5e-19 100.1 75 60.0
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 1.5e-19 100.1 71 62.0
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.5e-19 100.1 77 59.7
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.5e-19 100.1 75 56.0
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.0e-19 99.8 79 57.0
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.0e-19 99.8 75 57.3
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.0e-19 99.8 70 62.9
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 2.6e-19 99.4 76 57.9
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 2.6e-19 99.4 75 57.3
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 2.6e-19 99.4 72 63.9
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 2.6e-19 99.4 75 54.7
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 3.4e-19 99.0 75 58.7
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 3.4e-19 99.0 71 63.4
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 3.4e-19 99.0 76 53.9
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 3.4e-19 99.0 75 58.7
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 3.4e-19 99.0 76 57.9
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 3.4e-19 99.0 75 60.0
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 3.4e-19 99.0 71 62.0
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 4.4e-19 98.6 71 62.0
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 4.4e-19 98.6 75 57.3
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 4.4e-19 98.6 75 57.3
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.4e-19 98.6 76 53.9
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 4.4e-19 98.6 76 53.9
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 4.4e-19 98.6 75 60.0
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 5.7e-19 98.2 76 56.6
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 5.7e-19 98.2 75 58.7
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 5.7e-19 98.2 75 58.7
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.7e-19 98.2 75 54.7
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.7e-19 98.2 76 52.6
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 7.5e-19 97.8 76 59.2
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 9.8e-19 97.4 74 59.5
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 9.8e-19 97.4 74 58.1
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 9.8e-19 97.4 75 54.7
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.3e-18 97.1 74 56.8
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 1.3e-18 97.1 75 56.0
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.3e-18 97.1 76 53.9
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.7e-18 96.7 76 55.3
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.7e-18 96.7 76 53.9
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.7e-18 96.7 74 59.5
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 2.2e-18 96.3 79 62.0
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 2.2e-18 96.3 75 57.3
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.2e-18 96.3 72 61.1
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 2.2e-18 96.3 70 64.3
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 2.8e-18 95.9 72 61.1
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 2.8e-18 95.9 72 61.1
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.7e-18 95.5 76 52.6
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.7e-18 95.5 76 52.6
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.7e-18 95.5 75 56.0
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 3.7e-18 95.5 75 56.0
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 3.7e-18 95.5 75 56.0
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 4.9e-18 95.1 75 57.3
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 6.3e-18 94.7 76 50.0
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 8.3e-18 94.4 79 54.4
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.1e-17 94.0 76 53.9
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.4e-17 93.6 73 56.2
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.8e-17 93.2 74 56.8
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.4e-17 92.8 76 53.9
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.4e-17 92.8 69 58.0
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 3.1e-17 92.4 76 52.6
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 3.1e-17 92.4 73 58.9
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 4.1e-17 92.0 65 64.6
SEGI_06434 Sequoiadendron giganteum HOM05D005428 ORTHO05D006876 4.1e-17 92.0 60 73.3
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 7.0e-17 91.3 76 52.6
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 9.2e-17 90.9 76 52.6
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.2e-16 90.5 71 59.2
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-16 90.5 71 59.2
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-16 90.5 71 59.2
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-16 90.5 71 59.2
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-16 90.5 71 59.2
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.2e-16 90.5 71 59.2
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.2e-16 90.5 73 54.8
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.6e-16 90.1 69 56.5
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.6e-16 90.1 71 59.2
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 1.6e-16 90.1 76 53.9
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.6e-16 90.1 103 44.7
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 2.7e-16 89.4 71 53.5
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 7.8e-16 87.8 71 52.1
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 7.8e-16 87.8 65 63.1
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 7.8e-16 87.8 76 48.7
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.0e-15 87.4 71 56.3
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.3e-15 87.0 70 57.1
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.3e-15 87.0 70 57.1
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 1.7e-15 86.7 70 55.7
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 2.9e-15 85.9 66 60.6
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.8e-15 85.5 75 52.0
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 6.6e-15 84.7 75 50.7
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.3e-14 82.4 67 50.7
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 8.0e-13 77.8 55 63.6
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 3.0e-12 75.9 74 51.4
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 2.0e-11 73.2 63 50.8
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 3.7e-10 68.9 96 41.7
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 7.0e-09 64.7 40 72.5
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 4.6e-08 62.0 38 68.4
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 5.6e-06 55.1 42 50.0


User provided reference genes

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