Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06382 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 2.1e-64 248.8 120 100.0
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 1.6e-11 73.2 86 45.3
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 5.9e-11 71.2 80 45.0
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 7.7e-11 70.9 80 45.0
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 1.0e-10 70.5 44 75.0
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 1.0e-10 70.5 40 82.5
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 1.7e-10 69.7 40 80.0
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 1.7e-10 69.7 97 44.3
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 1.7e-10 69.7 40 80.0
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 1.7e-10 69.7 40 80.0
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 2.9e-10 68.9 87 42.5
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 3.8e-10 68.6 80 46.2
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 5.0e-10 68.2 46 69.6
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 6.6e-10 67.8 81 48.1
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 6.6e-10 67.8 40 80.0
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 6.6e-10 67.8 40 80.0
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 6.6e-10 67.8 40 80.0
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 6.6e-10 67.8 40 77.5
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 6.6e-10 67.8 40 77.5
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 8.6e-10 67.4 58 58.6
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 8.6e-10 67.4 45 68.9
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 8.6e-10 67.4 83 42.2
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 1.1e-09 67.0 39 76.9
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 1.1e-09 67.0 39 76.9
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 1.1e-09 67.0 39 76.9
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 1.1e-09 67.0 39 76.9
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 1.1e-09 67.0 39 76.9
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 1.1e-09 67.0 39 76.9
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 1.5e-09 66.6 40 77.5
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 1.5e-09 66.6 40 75.0
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 1.5e-09 66.6 40 75.0
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 1.5e-09 66.6 46 67.4
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 1.5e-09 66.6 40 77.5
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 1.5e-09 66.6 40 77.5
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 1.9e-09 66.2 38 81.6
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 1.9e-09 66.2 40 75.0
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 1.9e-09 66.2 39 79.5
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 1.9e-09 66.2 46 67.4
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 1.9e-09 66.2 46 67.4
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 1.9e-09 66.2 40 75.0
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 2.5e-09 65.9 39 74.4
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 2.5e-09 65.9 39 74.4
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 2.5e-09 65.9 39 74.4
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 2.5e-09 65.9 39 74.4
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 2.5e-09 65.9 39 74.4
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 2.5e-09 65.9 39 74.4
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 2.5e-09 65.9 39 74.4
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 2.5e-09 65.9 39 74.4
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 2.5e-09 65.9 39 74.4
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 2.5e-09 65.9 39 74.4
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 2.5e-09 65.9 40 75.0
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 2.5e-09 65.9 40 75.0
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 3.3e-09 65.5 40 75.0
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 3.3e-09 65.5 40 75.0
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 3.3e-09 65.5 46 63.0
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 3.3e-09 65.5 40 75.0
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 3.3e-09 65.5 40 75.0
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 4.2e-09 65.1 42 71.4
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 4.2e-09 65.1 40 72.5
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 4.2e-09 65.1 40 72.5
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 4.2e-09 65.1 39 76.9
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 4.2e-09 65.1 39 76.9
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 5.5e-09 64.7 40 75.0
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 5.5e-09 64.7 40 75.0
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 70.0
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 7.2e-09 64.3 40 72.5
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 9.5e-09 63.9 40 75.0
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 9.5e-09 63.9 40 72.5
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 9.5e-09 63.9 40 72.5
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 9.5e-09 63.9 40 72.5
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 9.5e-09 63.9 40 72.5
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 9.5e-09 63.9 40 72.5
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 9.5e-09 63.9 39 74.4
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 9.5e-09 63.9 40 72.5
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 1.2e-08 63.5 39 74.4
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 1.2e-08 63.5 40 72.5
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 1.6e-08 63.2 40 72.5
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 1.6e-08 63.2 40 72.5
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 1.6e-08 63.2 40 70.0
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.6e-08 63.2 39 74.4
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 1.6e-08 63.2 40 70.0
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 1.6e-08 63.2 40 70.0
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 1.6e-08 63.2 40 70.0
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 1.6e-08 63.2 39 74.4
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 2.8e-08 62.4 40 67.5
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 3.6e-08 62.0 40 70.0
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 3.6e-08 62.0 40 70.0
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 3.6e-08 62.0 40 70.0
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.6e-08 62.0 82 42.7
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 3.6e-08 62.0 40 70.0
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 3.6e-08 62.0 39 71.8
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 3.6e-08 62.0 40 67.5
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 4.7e-08 61.6 46 63.0
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 4.7e-08 61.6 46 63.0
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 4.7e-08 61.6 40 67.5
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 6.1e-08 61.2 81 40.7
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 6.1e-08 61.2 40 70.0
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 6.1e-08 61.2 40 70.0
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 6.1e-08 61.2 40 67.5
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 6.1e-08 61.2 40 70.0
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 6.1e-08 61.2 40 67.5
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 6.1e-08 61.2 40 67.5
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 8.0e-08 60.8 39 71.8
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 8.0e-08 60.8 39 71.8
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 1.0e-07 60.5 40 65.0
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 1.4e-07 60.1 39 69.2
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.8e-07 59.7 39 71.8
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.8e-07 59.7 39 71.8
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.8e-07 59.7 39 71.8
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.8e-07 59.7 39 71.8
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.8e-07 59.7 39 71.8
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 3.0e-07 58.9 40 70.0
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 4.0e-07 58.5 38 68.4
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 5.2e-07 58.2 41 63.4
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 5.2e-07 58.2 41 63.4
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 6.8e-07 57.8 40 62.5
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 8.9e-07 57.4 39 69.2
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 1.5e-06 56.6 97 32.0
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 2.6e-06 55.8 39 69.2
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 2.6e-06 55.8 47 55.3
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 2.6e-06 55.8 43 62.8
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 4.4e-06 55.1 57 43.9
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 4.4e-06 55.1 57 43.9
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 4.4e-06 55.1 80 35.0
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 4.4e-06 55.1 80 35.0
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 4.4e-06 55.1 80 35.0


User provided reference genes

Program Settings