Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05937 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 2.9e-34 147.9 70 100.0
SEGI_01945 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 4.3e-30 134.0 63 100.0
Hma1.2p1_0111F.1_g053420 Hydrangea macrophylla HOM05D007555 ORTHO05D009521 1.0e-18 96.3 56 73.2
PSO339G2355 Papaver somniferum HOM05D007555 ORTHO05D009521 1.0e-18 96.3 56 71.4
ATR0693G428 Amborella trichopoda HOM05D007555 ORTHO05D009521 1.3e-18 95.9 60 68.3
PSO384G0825 Papaver somniferum HOM05D007555 ORTHO05D009521 1.3e-18 95.9 56 71.4
Potri.006G215300 Populus trichocarpa HOM05D007555 ORTHO05D009521 1.3e-18 95.9 56 71.4
Thecc.05G049100 Theobroma cacao HOM05D007555 ORTHO05D009521 1.3e-18 95.9 56 71.4
TWI53G2115 Tripterygium wilfordii HOM05D007555 ORTHO05D009521 1.7e-18 95.5 56 75.0
Atru.chr8.2503 Acer truncatum HOM05D007555 ORTHO05D009521 2.2e-18 95.1 56 73.2
CARHR210660 Cardamine hirsuta HOM05D007555 ORTHO05D009521 2.9e-18 94.7 56 73.2
Dinv37229 Davidia involucrata HOM05D007555 ORTHO05D009521 2.9e-18 94.7 56 73.2
Actinidia05288 Actinidia chinensis HOM05D007555 ORTHO05D009521 3.8e-18 94.4 56 73.2
Nn2g12825 Nelumbo nucifera HOM05D000419 ORTHO05D000692 3.8e-18 94.4 63 65.1
Cc06_g03250 Coffea canephora HOM05D007555 ORTHO05D009521 6.5e-18 93.6 59 69.5
Gohir.D01G207300 Gossypium hirsutum HOM05D007555 ORTHO05D009521 6.5e-18 93.6 56 69.6
DCAR_017749 Daucus carota HOM05D007555 ORTHO05D009521 8.5e-18 93.2 56 71.4
Sabra06G0166200 Salix brachista HOM05D007555 ORTHO05D009521 8.5e-18 93.2 56 69.6
Aqoxy2G01932 Aquilegia oxysepala HOM05D007555 ORTHO05D009521 1.1e-17 92.8 62 61.3
arahy.Tifrunner.gnm1.ann1.UIJ5I4 Arachis hypogaea HOM05D007555 ORTHO05D009521 1.1e-17 92.8 59 69.5
MSTRG.26743 Avicennia marina HOM05D007555 ORTHO05D009521 1.1e-17 92.8 56 73.2
Lalb_Chr02g0153411 Lupinus albus HOM05D007555 ORTHO05D009521 1.4e-17 92.4 59 66.1
Prupe.6G246000 Prunus persica HOM05D007555 ORTHO05D009521 1.4e-17 92.4 64 64.1
Aa31LG1G22170 Aethionema arabicum HOM05D007555 ORTHO05D009521 1.9e-17 92.0 56 71.4
BcaNung03281 Brassica carinata HOM05D007555 ORTHO05D009521 1.9e-17 92.0 56 69.6
C09p73970 Brassica napus HOM05D007555 ORTHO05D009521 1.9e-17 92.0 56 69.6
BolC9t60132H Brassica oleracea HOM05D007555 ORTHO05D009521 1.9e-17 92.0 56 69.6
Haze_20696 Corylus avellana HOM05D007555 ORTHO05D009521 1.9e-17 92.0 59 62.7
vmacro08680 Vaccinium macrocarpon HOM05D007555 ORTHO05D009521 1.9e-17 92.0 63 63.5
Cpa.g.sc114.21 Carica papaya HOM05D007555 ORTHO05D009521 2.5e-17 91.7 56 67.9
Gorai.002G252400 Gossypium raimondii HOM05D007555 ORTHO05D009521 2.5e-17 91.7 56 67.9
MD12G1131600 Malus domestica HOM05D007555 ORTHO05D009521 2.5e-17 91.7 62 66.1
BcaC06g32006 Brassica carinata HOM05D007555 ORTHO05D009521 3.2e-17 91.3 56 69.6
Eucgr.A01211 Eucalyptus grandis HOM05D007555 ORTHO05D009521 3.2e-17 91.3 60 66.7
Migut.L01641 Erythranthe guttata HOM05D007555 ORTHO05D009521 4.2e-17 90.9 59 67.8
EL10Ac9g22121 Beta vulgaris HOM05D007555 ORTHO05D009521 5.5e-17 90.5 56 67.9
Thhalv10014815m.g Eutrema salsugineum HOM05D007555 ORTHO05D009521 5.5e-17 90.5 56 69.6
Psat6g069400 Pisum sativum HOM05D007555 ORTHO05D009521 5.5e-17 90.5 56 69.6
Manes.08G000300 Manihot esculenta HOM05D007555 ORTHO05D009521 7.2e-17 90.1 56 71.4
QL07p045973 Quercus lobata HOM05D007555 ORTHO05D009521 7.2e-17 90.1 56 67.9
TPR.G7549 Trifolium pratense HOM05D007555 ORTHO05D009521 7.2e-17 90.1 56 69.6
A10p33000 Brassica napus HOM05D007555 ORTHO05D009521 1.2e-16 89.4 56 67.9
BraA10t45337Z Brassica rapa HOM05D007555 ORTHO05D009521 1.2e-16 89.4 56 67.9
SGA_v2.0_scaffold94G28647 Striga asiatica HOM05D007555 ORTHO05D009521 1.2e-16 89.4 56 69.6
CsaV3_4G024530 Cucumis sativus L. HOM05D007555 ORTHO05D009521 1.6e-16 89.0 56 69.6
Lj5g0027152 Lotus japonicus HOM05D007555 ORTHO05D009521 1.6e-16 89.0 56 66.1
AL6G11950 Arabidopsis lyrata HOM05D007555 ORTHO05D009521 2.1e-16 88.6 56 69.6
CAN.G350.37 Capsicum annuum HOM05D007555 ORTHO05D009521 2.1e-16 88.6 56 69.6
ClCG04G008630 Citrullus lanatus HOM05D007555 ORTHO05D009521 2.1e-16 88.6 63 63.5
Nitab4.5_0000643g0170 Nicotiana tabacum HOM05D007555 ORTHO05D009521 3.6e-16 87.8 56 66.1
Nitab4.5_0006252g0040 Nicotiana tabacum HOM05D007555 ORTHO05D009521 3.6e-16 87.8 56 66.1
Peaxi162Scf00597g00516 Petunia axillaris HOM05D007555 ORTHO05D009521 3.6e-16 87.8 56 69.6
PGR004G0254 Punica granatum HOM05D007555 ORTHO05D009521 3.6e-16 87.8 56 66.1
Sed0003448 Sechium edule HOM05D007555 ORTHO05D009521 3.6e-16 87.8 61 62.3
AUR62030924 Chenopodium quinoa HOM05D007555 ORTHO05D009521 4.7e-16 87.4 56 66.1
Ciclev10012844m.g Citrus clementina HOM05D007555 ORTHO05D009521 4.7e-16 87.4 59 66.1
Gohir.A01G218500 Gossypium hirsutum HOM05D007555 ORTHO05D009521 4.7e-16 87.4 56 66.1
Medtr1g067330 Medicago truncatula HOM05D007555 ORTHO05D009521 4.7e-16 87.4 56 66.1
Solyc09g006000.3 Solanum lycopersicum HOM05D007555 ORTHO05D009521 4.7e-16 87.4 56 69.6
Ah.01g007300 Amaranthus hybridus HOM05D007555 ORTHO05D009521 6.1e-16 87.0 56 66.1
FvH4_6g14780 Fragaria vesca HOM05D007555 ORTHO05D009521 6.1e-16 87.0 63 63.5
FAN05G0792 Fragaria x ananassa HOM05D007555 ORTHO05D009521 6.1e-16 87.0 63 63.5
FAN14G0454 Fragaria x ananassa HOM05D007555 ORTHO05D009521 6.1e-16 87.0 63 63.5
GSVIVG01025579001 Vitis vinifera HOM05D007555 ORTHO05D009521 6.1e-16 87.0 63 61.9
Glyma.13G134800 Glycine max HOM05D007555 ORTHO05D009521 8.0e-16 86.7 56 64.3
Hund06478 Selenicereus undatus HOM05D007555 ORTHO05D009521 8.0e-16 86.7 56 64.3
PGSC0003DMG400023920 Solanum tuberosum HOM05D007555 ORTHO05D009521 8.0e-16 86.7 53 73.6
VMungo0720G3150 Vigna mungo HOM05D007555 ORTHO05D009521 1.0e-15 86.3 59 61.0
AT5G02710 Arabidopsis thaliana HOM05D007555 ORTHO05D009521 1.4e-15 85.9 56 66.1
Carub.0006s0147 Capsella rubella HOM05D007555 ORTHO05D009521 1.4e-15 85.9 56 66.1
ECA238G3221 Erigeron canadensis HOM05D000025 ORTHO05D000040 1.4e-15 85.9 56 67.9
Phvul.007G161000 Phaseolus vulgaris HOM05D007555 ORTHO05D009521 1.8e-15 85.5 59 61.0
RcHm_v2.0_Chr3g0468011 Rosa chinensis HOM05D007555 ORTHO05D009521 1.8e-15 85.5 63 61.9
CDE05G2937 Ceratophyllum demersum HOM05D007555 ORTHO05D009521 2.3e-15 85.1 56 64.3
FAN09G3476 Fragaria x ananassa HOM05D007555 ORTHO05D009521 3.0e-15 84.7 56 67.9
THA.LOC104816299 Tarenaya hassleriana HOM05D007555 ORTHO05D009521 8.8e-15 83.2 72 55.6
FAN02G2228 Fragaria x ananassa HOM05D007555 ORTHO05D009521 9.7e-14 79.7 63 58.7
HanXRQChr07g0204191 Helianthus annuus HOM05D007555 ORTHO05D009521 1.3e-13 79.3 56 66.1
MELO3C003085.2 Cucumis melo HOM05D007555 ORTHO05D009521 1.7e-13 79.0 63 60.3
Pp3c1_22520 Physcomitrium patens HOM05D007555 ORTHO05D009521 3.7e-13 77.8 56 55.4
arahy.Tifrunner.gnm1.ann1.ASDQ9T Arachis hypogaea HOM05D007555 ORTHO05D009521 4.1e-12 74.3 94 43.6
CiPaw.09G185700 Carya illinoinensis HOM05D007555 ORTHO05D009521 9.1e-12 73.2 56 55.4
unitig_0.g697 Utricularia gibba HOM05D000139 ORTHO05D009521 1.6e-11 72.4 42 71.4
Lj2P231T24 Lonicera japonica HOM05D007555 ORTHO05D009521 3.5e-11 71.2 41 73.2
Zm00001eb017700 Zea mays HOM05D007555 ORTHO05D009521 3.5e-11 71.2 56 51.8
BcaC03g16355 Brassica carinata HOM05D007555 ORTHO05D009521 1.7e-10 68.9 50 58.0
C02p41790 Brassica napus HOM05D007555 ORTHO05D009521 2.2e-10 68.6 40 67.5
Os03g0363400 Oryza sativa ssp. japonica HOM05D007555 ORTHO05D009521 6.5e-10 67.0 58 51.7
Cfa017464 Carpinus fangiana HOM05D007555 ORTHO05D009521 8.5e-10 66.6 56 51.8
BcaC09g50387 Brassica carinata HOM05D007555 ORTHO05D009521 1.9e-09 65.5 56 53.6
Lsat_1_v5_gn_2_111420 Lactuca sativa HOM05D007555 ORTHO05D009521 5.5e-09 63.9 31 83.9
Sp6g39860 Schrenkiella parvula HOM05D007555 ORTHO05D009521 5.5e-09 63.9 31 83.9
C01p26070 Brassica napus HOM05D007555 ORTHO05D009521 1.6e-08 62.4 58 44.8
Sc08g0004110 Simmondsia chinensis HOM05D007555 ORTHO05D009521 2.7e-08 61.6 31 80.6
BolC1t02552H Brassica oleracea HOM05D007555 ORTHO05D009521 1.8e-07 58.9 47 53.2


User provided reference genes

Program Settings