Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 0.0e+00 2343.2 1310 100.0
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 0.0e+00 2282.7 1279 100.0
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 9.0e-121 439.5 1288 34.5
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 4.2e-118 430.6 1332 34.3
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 8.2e-114 416.4 1289 34.4
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 4.0e-100 370.9 1356 32.7
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 1.7e-98 365.5 1291 32.6
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.3e-95 355.9 1293 33.4
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.2e-95 355.1 1300 33.0
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.2e-95 355.1 1287 32.5
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 1.4e-92 345.9 1295 32.1
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 5.2e-92 344.0 1271 32.5
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 1.5e-91 342.4 1287 31.9
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 4.8e-90 337.4 1353 32.4
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 8.3e-90 336.7 1290 33.0
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 2.4e-89 335.1 1279 32.1
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 1.2e-88 332.8 1283 33.4
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 2.0e-88 332.0 1294 31.9
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 2.7e-88 331.6 1282 32.5
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 1.9e-86 325.5 1298 32.7
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 5.5e-86 323.9 1288 32.2
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 1.6e-85 322.4 1291 31.3
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 2.7e-85 321.6 1284 32.1
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 5.2e-84 317.4 1361 31.3
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 6.8e-84 317.0 1350 31.5
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 1.2e-83 316.2 1343 31.9
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 1.5e-83 315.8 1292 32.1
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 3.4e-83 314.7 1288 31.0
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 9.8e-83 313.2 1334 28.1
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.3e-82 312.8 1366 31.8
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.3e-82 312.8 1363 30.5
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 2.8e-82 311.6 1267 31.6
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 3.7e-82 311.2 1347 31.6
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 6.3e-82 310.5 1301 30.3
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 6.3e-82 310.5 1297 32.4
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 1.8e-81 308.9 1344 31.0
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.4e-81 308.5 1296 31.5
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 2.4e-81 308.5 1288 31.1
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 3.1e-81 308.1 1295 30.6
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 3.1e-81 308.1 1357 31.5
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 5.4e-81 307.4 1304 31.2
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.3e-79 302.8 1356 31.1
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 6.6e-79 300.4 1289 32.0
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 1.9e-78 298.9 1346 30.7
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 4.2e-78 297.7 1299 31.3
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 9.5e-78 296.6 1356 31.3
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 2.1e-77 295.4 1298 30.7
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 3.6e-77 294.7 1343 30.4
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 8.0e-77 293.5 1300 31.4
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 2.3e-76 292.0 1325 30.8
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 3.0e-76 291.6 1276 30.6
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 5.2e-76 290.8 1300 29.8
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 9.8e-75 286.6 1299 30.7
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 1.7e-74 285.8 1269 30.7
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 2.9e-74 285.0 1284 31.7
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 3.7e-74 284.6 1291 29.4
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 4.9e-74 284.3 1340 31.2
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 6.4e-74 283.9 1348 30.0
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 1.1e-73 283.1 1277 31.8
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 9.2e-73 280.0 1361 29.2
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 1.2e-72 279.6 1197 32.3
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 5.9e-72 277.3 1289 31.0
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 1.0e-71 276.6 1257 30.8
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 1.1e-70 273.1 1340 29.5
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 7.3e-70 270.4 1321 26.2
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 2.8e-69 268.5 1280 26.5
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 1.0e-68 266.5 1262 30.0
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 2.3e-68 265.4 1326 29.0
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 5.2e-68 264.2 1267 29.8
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 2.6e-67 261.9 1260 29.1
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 5.8e-67 260.8 1247 30.0
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 4.9e-66 257.7 1269 30.2
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 8.3e-66 256.9 1355 30.7
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 1.1e-65 256.5 1359 29.2
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 9.2e-65 253.4 1280 29.7
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 1.3e-63 249.6 1265 31.9
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 1.3e-63 249.6 1343 30.3
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 2.3e-63 248.8 1262 30.0
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 1.9e-62 245.7 1267 26.7
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 2.1e-61 242.3 1261 27.8
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 3.6e-61 241.5 744 37.2
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 6.2e-61 240.7 1278 29.7
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 8.1e-61 240.4 1280 30.5
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 4.0e-60 238.0 1204 29.4
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 5.2e-60 237.7 1508 27.8
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 3.4e-59 235.0 1667 28.3
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 3.4e-59 235.0 1345 28.3
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 2.3e-55 222.2 1278 26.0
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 5.1e-55 221.1 1256 30.0
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 5.1e-55 221.1 1256 30.0
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 5.1e-55 221.1 1256 30.0
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 5.1e-55 221.1 361 39.9
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 1.5e-54 219.5 1263 28.8
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 1.9e-54 219.2 1275 29.5
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 3.3e-54 218.4 1275 29.0
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 5.6e-54 217.6 473 36.6
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 9.5e-54 216.9 1337 30.3
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 1.2e-51 209.9 1242 25.0
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 1.9e-49 202.6 1245 28.4
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 2.4e-49 202.2 1336 27.5
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 4.7e-45 188.0 373 39.1
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 1.8e-44 186.0 476 33.6
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 8.9e-44 183.7 779 29.1
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 5.8e-43 181.0 205 49.3
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 2.9e-42 178.7 1168 29.4
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 3.9e-39 168.3 157 54.1
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 8.7e-39 167.2 404 35.1
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 2.8e-37 162.2 129 61.2
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 6.2e-37 161.0 389 34.7
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 9.0e-36 157.1 1099 28.7
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 1.3e-31 143.3 1366 22.9
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 8.7e-31 140.6 285 37.2
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 7.4e-30 137.5 730 25.6
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 1.4e-28 133.3 1081 27.7
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 2.9e-26 125.6 125 53.6
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 3.2e-25 122.1 125 52.8
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 5.5e-25 121.3 1255 25.3
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 3.0e-23 115.5 633 24.6
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 7.4e-22 110.9 477 27.9
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 1.3e-21 110.2 347 29.7
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.1e-20 107.1 190 36.3
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 9.0e-20 104.0 1082 27.8
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 2.2e-18 99.4 1130 23.5
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 4.9e-18 98.2 563 25.9
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.9e-17 96.3 135 39.3
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 2.5e-17 95.9 1261 25.2
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 4.2e-17 95.1 66 63.6
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 6.0e-16 91.3 774 22.9
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 6.0e-16 91.3 104 44.2
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 3.3e-14 85.5 734 23.8
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 4.3e-14 85.1 248 27.4
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 1.3e-13 83.6 52 69.2
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 6.9e-12 77.8 147 38.1
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 1.3e-10 73.6 125 33.6
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 1.6e-08 66.6 134 35.1
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 2.7e-08 65.9 62 53.2
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 6.1e-08 64.7 541 24.2
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 7.9e-08 64.3 53 60.4
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 8.7e-07 60.8 79 48.1
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 4.3e-06 58.5 56 51.8


User provided reference genes

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