Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05636 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 3.2e-30 134.4 67 100.0
SEGI_14641 Sequoiadendron giganteum HOM05D000136 ORTHO05D385320 2.1e-21 105.1 68 83.8
SEGI_37158 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 3.6e-18 94.4 96 57.3
SEGI_35206 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 7.6e-16 86.7 98 54.1
SEGI_36103 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 1.3e-15 85.9 98 52.0
SEGI_37881 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 1.3e-15 85.9 98 52.0
SEGI_11707 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 8.4e-15 83.2 97 51.5
SEGI_37305 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 8.4e-15 83.2 97 51.5
SEGI_41313 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 2.1e-13 78.6 98 51.0
SEGI_01112 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 7.9e-13 76.6 97 51.5
SEGI_08352 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 7.9e-13 76.6 97 50.5
SEGI_31305 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 1.0e-12 76.3 97 49.5
SEGI_09684 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 1.8e-12 75.5 97 49.5
SEGI_10509 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 3.0e-12 74.7 97 50.5
SEGI_22292 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 6.7e-12 73.6 97 50.5
SEGI_40775 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 6.7e-12 73.6 97 49.5
SEGI_01302 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 1.1e-11 72.8 97 48.5
SEGI_13910 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 5.6e-11 70.5 41 90.2
SEGI_17350 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 7.4e-11 70.1 97 46.4
SEGI_13948 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 9.6e-11 69.7 44 81.8
SEGI_18902 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 1.6e-10 68.9 43 81.4
SEGI_09888 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 2.1e-10 68.6 44 81.8
SEGI_32073 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 2.1e-10 68.6 97 47.4
SEGI_39869 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 2.1e-10 68.6 97 48.5
SEGI_14107 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 3.7e-10 67.8 44 79.5
SEGI_07993 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 4.8e-10 67.4 44 81.8
SEGI_25255 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 4.8e-10 67.4 44 81.8
SEGI_25017 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 6.2e-10 67.0 97 42.3
SEGI_19927 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 1.4e-09 65.9 44 79.5
SEGI_32898 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 4.0e-09 64.3 42 78.6
SEGI_21979 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 5.3e-09 63.9 44 77.3
SEGI_39662 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 6.9e-09 63.5 97 42.3
SEGI_33075 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 9.0e-09 63.2 97 44.3
SEGI_19445 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 1.5e-08 62.4 44 75.0
SEGI_34896 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 1.5e-08 62.4 43 74.4
SEGI_36908 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 2.0e-08 62.0 44 72.7
SEGI_29060 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 2.6e-08 61.6 44 75.0
SEGI_15017 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 5.8e-08 60.5 79 46.8
AUR62009102 Chenopodium quinoa HOM05D000136 ORTHO05D000080 8.4e-07 56.6 45 64.4
Lalb_Chr11g0069001 Lupinus albus HOM05D000136 ORTHO05D000080 8.4e-07 56.6 45 66.7
Atru.chr7.1903 Acer truncatum HOM05D000136 ORTHO05D000080 1.1e-06 56.2 45 64.4
Cpa.g.sc126.51 Carica papaya HOM05D000136 ORTHO05D000080 1.1e-06 56.2 45 64.4
Nitab4.5_0000286g0050 Nicotiana tabacum HOM05D000136 ORTHO05D000080 1.1e-06 56.2 57 52.6
RcHm_v2.0_Chr6g0311461 Rosa chinensis HOM05D000136 ORTHO05D000080 1.1e-06 56.2 45 64.4
Cpa.g.sc126.52 Carica papaya HOM05D000136 ORTHO05D000080 1.4e-06 55.8 45 62.2
Glyma.17G224900 Glycine max HOM05D000136 ORTHO05D000080 1.4e-06 55.8 48 62.5
Lj5g0004770 Lotus japonicus HOM05D000136 ORTHO05D000080 1.4e-06 55.8 45 64.4
Lj5g0008929 Lotus japonicus HOM05D000136 ORTHO05D000080 1.4e-06 55.8 45 64.4
Lj5g0020031 Lotus japonicus HOM05D000136 ORTHO05D000080 1.4e-06 55.8 45 64.4
Lj5g0025088 Lotus japonicus HOM05D000136 ORTHO05D000080 1.4e-06 55.8 45 64.4
MBI05_g23631_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 1.4e-06 55.8 44 61.4
MBI06_g02571_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 1.4e-06 55.8 45 62.2
Psat6g021800 Pisum sativum HOM05D000136 ORTHO05D000080 1.4e-06 55.8 48 62.5
Psat6g022160 Pisum sativum HOM05D000136 ORTHO05D000080 1.4e-06 55.8 48 62.5
Psat6g022240 Pisum sativum HOM05D000136 ORTHO05D000080 1.4e-06 55.8 48 62.5
TAR624G1204 Trochodendron aralioides HOM05D000136 ORTHO05D000080 1.4e-06 55.8 45 64.4
Ah.10g034030 Amaranthus hybridus HOM05D000136 ORTHO05D000080 1.9e-06 55.5 45 64.4
EL10Ac2g03809 Beta vulgaris HOM05D000136 ORTHO05D000080 1.9e-06 55.5 45 62.2
Haze_18136 Corylus avellana HOM05D000136 ORTHO05D000080 1.9e-06 55.5 48 60.4
Haze_18138 Corylus avellana HOM05D000136 ORTHO05D000080 1.9e-06 55.5 48 60.4
Duzib150G1576 Durio zibethinus HOM05D000136 ORTHO05D000080 1.9e-06 55.5 58 51.7
ECA240G1758 Erigeron canadensis HOM05D000136 ORTHO05D000080 1.9e-06 55.5 47 59.6
FvH4_2g31371 Fragaria vesca HOM05D000136 ORTHO05D000080 1.9e-06 55.5 45 62.2
FAN24G1095 Fragaria x ananassa HOM05D000136 ORTHO05D000080 1.9e-06 55.5 45 62.2
Psat5g035240 Pisum sativum HOM05D000136 ORTHO05D000080 1.9e-06 55.5 48 60.4
Psat5g035280 Pisum sativum HOM05D000136 ORTHO05D000080 1.9e-06 55.5 48 60.4
Sed0012346 Sechium edule HOM05D000136 ORTHO05D000080 1.9e-06 55.5 60 51.7
TPR.G16493 Trifolium pratense HOM05D000136 ORTHO05D000080 1.9e-06 55.5 45 64.4
TPR.G40573 Trifolium pratense HOM05D000136 ORTHO05D000080 1.9e-06 55.5 45 64.4
CSS0005223 Camellia sinensis var. sinensis HOM05D000136 ORTHO05D000080 2.5e-06 55.1 48 62.5
CSS0024472 Camellia sinensis var. sinensis HOM05D000136 ORTHO05D000080 2.5e-06 55.1 48 62.5
CSS0026975 Camellia sinensis var. sinensis HOM05D000136 ORTHO05D000080 2.5e-06 55.1 48 60.4
Cfa017998 Carpinus fangiana HOM05D000136 ORTHO05D000080 2.5e-06 55.1 48 60.4
Cfa018000 Carpinus fangiana HOM05D000136 ORTHO05D000080 2.5e-06 55.1 48 60.4
CiPaw.15G088500 Carya illinoinensis HOM05D000136 ORTHO05D000080 2.5e-06 55.1 44 61.4
AUR62020570 Chenopodium quinoa HOM05D000136 ORTHO05D000080 2.5e-06 55.1 45 60.0
Ciclev10009756m.g Citrus clementina HOM05D000136 ORTHO05D000080 2.5e-06 55.1 45 62.2
FAN15G0454 Fragaria x ananassa HOM05D000136 ORTHO05D000080 2.5e-06 55.1 45 62.2
FAN20G2334 Fragaria x ananassa HOM05D000136 ORTHO05D000080 2.5e-06 55.1 45 62.2
FAN27G1490 Fragaria x ananassa HOM05D000136 ORTHO05D000080 2.5e-06 55.1 45 62.2
Glyma.14G100000 Glycine max HOM05D000136 ORTHO05D000080 2.5e-06 55.1 45 64.4
MD15G1053800 Malus domestica HOM05D000136 ORTHO05D000080 2.5e-06 55.1 45 62.2
Solyc08g062340.3 Solanum lycopersicum HOM05D000136 ORTHO05D000080 2.5e-06 55.1 45 64.4
VMungo0647G2315 Vigna mungo HOM05D000136 ORTHO05D000080 2.5e-06 55.1 45 64.4
Gohir.A05G040000 Gossypium hirsutum HOM05D000136 ORTHO05D000080 3.2e-06 54.7 48 58.3
Sopen08g017870 Solanum pennellii HOM05D000136 ORTHO05D000080 3.2e-06 54.7 45 64.4
TAR624G0976 Trochodendron aralioides HOM05D000136 ORTHO05D000080 3.2e-06 54.7 45 62.2
Atru.chr7.1909 Acer truncatum HOM05D000136 ORTHO05D000080 4.2e-06 54.3 46 60.9
ATR0051G049 Amborella trichopoda HOM05D000136 ORTHO05D000080 4.2e-06 54.3 98 36.7
ECA240G3518 Erigeron canadensis HOM05D000136 ORTHO05D000080 4.2e-06 54.3 46 60.9
HanXRQChr03g0072431 Helianthus annuus HOM05D000136 ORTHO05D000080 4.2e-06 54.3 48 56.2
Lsat_1_v5_gn_7_60201 Lactuca sativa HOM05D000136 ORTHO05D000080 4.2e-06 54.3 48 54.2
Lalb_Chr11g0069451 Lupinus albus HOM05D000136 ORTHO05D000080 4.2e-06 54.3 45 64.4
Potri.006G223900 Populus trichocarpa HOM05D000136 ORTHO05D000080 4.2e-06 54.3 45 62.2
SHI37102 Sapria himalayana HOM05D000136 ORTHO05D000080 4.2e-06 54.3 57 52.6
PGSC0003DMG400021737 Solanum tuberosum HOM05D000136 ORTHO05D000080 4.2e-06 54.3 45 62.2
Thecc.09G059400 Theobroma cacao HOM05D000136 ORTHO05D000080 4.2e-06 54.3 48 58.3
GSVIVG01035430001 Vitis vinifera HOM05D000136 ORTHO05D000080 4.2e-06 54.3 45 62.2
GSVIVG01035436001 Vitis vinifera HOM05D000136 ORTHO05D000080 4.2e-06 54.3 45 62.2
CANSAT21G0693 Cannabis sativa HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 62.2
CiPaw.15G088200 Carya illinoinensis HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 62.2
CiPaw.15G088300 Carya illinoinensis HOM05D000136 ORTHO05D000080 5.5e-06 53.9 44 59.1
ECA240G0369 Erigeron canadensis HOM05D006295 ORTHO05D000080 5.5e-06 53.9 59 50.8
Glyma.04G054400 Glycine max HOM05D000136 ORTHO05D000080 5.5e-06 53.9 47 59.6
Glyma.14G099900 Glycine max HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 62.2
Gohir.D05G041500 Gossypium hirsutum HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 60.0
Gorai.009G042100 Gossypium raimondii HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 60.0
Lj7C239T6 Lonicera japonica HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 60.0
Lj7C245T5 Lonicera japonica HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 60.0
Lalb_Chr08g0244901 Lupinus albus HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 64.4
MBI05_g23632_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 5.5e-06 53.9 44 59.1
MD08G1068000 Malus domestica HOM05D000136 ORTHO05D000080 5.5e-06 53.9 44 61.4
Manes.16G083600 Manihot esculenta HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 62.2
Nitab4.5_0000286g0040 Nicotiana tabacum HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 62.2
Peaxi162Scf01253g00002 Petunia axillaris HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 62.2
Phvul.001G039700 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 62.2
Psat5g035320 Pisum sativum HOM05D000136 ORTHO05D000080 5.5e-06 53.9 48 56.2
Prupe.1G407300 Prunus persica HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 60.0
RcHm_v2.0_Chr6g0311451 Rosa chinensis HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 62.2
SGA_v2.0_scaffold64G21856 Striga asiatica HOM05D000136 ORTHO05D000080 5.5e-06 53.9 45 62.2
Thecc.09G059500 Theobroma cacao HOM05D000136 ORTHO05D000080 5.5e-06 53.9 58 51.7
CAN.G338.51 Capsicum annuum HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 62.2
CAN.G338.52 Capsicum annuum HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 62.2
CiPaw.15G087800 Carya illinoinensis HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 62.2
Ca_15844_v3 Cicer arietinum L. HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 60.0
COL.COLO4_21109 Corchorus olitorius HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 60.0
Duzib168G0689 Durio zibethinus HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 60.0
Duzib168G1634 Durio zibethinus HOM05D000136 ORTHO05D000080 7.1e-06 53.5 46 58.7
ECA240G0232 Erigeron canadensis HOM05D000136 ORTHO05D000080 7.1e-06 53.5 50 56.0
FAN15G3427 Fragaria x ananassa HOM05D000136 ORTHO05D000080 7.1e-06 53.5 46 56.5
FAN20G2807 Fragaria x ananassa HOM05D000136 ORTHO05D000080 7.1e-06 53.5 46 56.5
Hma1.2p1_2284F.1_g318910 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 57.8
Lsat_1_v5_gn_7_60240 Lactuca sativa HOM05D000136 ORTHO05D000080 7.1e-06 53.5 59 47.5
Lalb_Chr23g0267941 Lupinus albus HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 64.4
MD08G1068200 Malus domestica HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 60.0
MD08G1068300 Malus domestica HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 60.0
Nn6g35570 Nelumbo nucifera HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 62.2
Nitab4.5_0000286g0060 Nicotiana tabacum HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 60.0
Nitab4.5_0000286g0070 Nicotiana tabacum HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 60.0
Psat6g021840 Pisum sativum HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 62.2
QL02p000387 Quercus lobata HOM05D000136 ORTHO05D000080 7.1e-06 53.5 48 56.2
Rhsim12G0087000 Rhododendron simsii HOM05D000136 ORTHO05D000080 7.1e-06 53.5 46 58.7
SHI37367 Sapria himalayana HOM05D000002 ORTHO05D000080 7.1e-06 53.5 61 49.2
Solyc08g062437.1 Solanum lycopersicum HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 62.2
Sopen08g017960 Solanum pennellii HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 62.2
PGSC0003DMG400008187 Solanum tuberosum HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 62.2
TWI32G0452 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 60.0
TWI34G1479 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 60.0
TWI63G1578 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 7.1e-06 53.5 45 57.8
Atru.chr7.1902 Acer truncatum HOM05D000136 ORTHO05D000080 9.3e-06 53.1 46 58.7
Aqoxy2G01038 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 9.3e-06 53.1 47 55.3
Migut.A00100 Erythranthe guttata HOM05D000136 ORTHO05D000080 9.3e-06 53.1 45 60.0
FvH4_2g31370 Fragaria vesca HOM05D000136 ORTHO05D000080 9.3e-06 53.1 46 56.5
Glyma.17G225000 Glycine max HOM05D000136 ORTHO05D000080 9.3e-06 53.1 51 56.9
Gohir.A07G020900 Gossypium hirsutum HOM05D000136 ORTHO05D000080 9.3e-06 53.1 48 60.4
Hma1.2p1_0196F.1_g084960 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 9.3e-06 53.1 47 55.3
Hma1.2p1_0196F.1_g084980 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 9.3e-06 53.1 47 55.3
Hma1.2p1_0231F.1_g097580 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 9.3e-06 53.1 47 55.3
Lj1g0005390 Lotus japonicus HOM05D000136 ORTHO05D000080 9.3e-06 53.1 45 62.2
Medtr1g015165 Medicago truncatula HOM05D000136 ORTHO05D000080 9.3e-06 53.1 46 58.7
Nn8g38744 Nelumbo nucifera HOM05D000136 ORTHO05D000080 9.3e-06 53.1 61 50.8
PGR031G3612 Punica granatum HOM05D000136 ORTHO05D000080 9.3e-06 53.1 61 49.2
Sabra06G0173100 Salix brachista HOM05D000136 ORTHO05D000080 9.3e-06 53.1 45 60.0
TPR.G38883 Trifolium pratense HOM05D000136 ORTHO05D000080 9.3e-06 53.1 45 62.2
unitig_32.g10908 Utricularia gibba HOM05D000136 ORTHO05D000080 9.3e-06 53.1 48 56.2
vmacro01411 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 9.3e-06 53.1 46 58.7


User provided reference genes

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