Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05375 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 4.5e-222 774.2 380 100.0
SEGI_02923 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 1.3e-213 746.1 380 96.3
SEGI_39139 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 6.6e-157 557.8 420 69.8
SEGI_24399 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 2.1e-142 509.6 317 83.9
SEGI_39524 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 2.1e-142 509.6 317 83.9
SEGI_18393 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 3.3e-140 502.3 387 70.5
SEGI_12151 Sequoiadendron giganteum HOM05D017318 ORTHO05D386110 1.1e-92 344.4 253 69.2
SEGI_15050 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 6.4e-27 125.9 358 28.2
SEGI_10025 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 7.8e-25 119.0 370 26.5
SEGI_06477 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 5.1e-24 116.3 366 27.6
SEGI_17066 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 6.6e-24 115.9 319 29.5
SEGI_37285 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 5.6e-23 112.8 313 27.8
SEGI_28559 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 1.6e-22 111.3 317 28.7
SEGI_01072 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 2.8e-22 110.5 381 24.9
SEGI_37037 Sequoiadendron giganteum HOM05D041823 ORTHO05D012113 6.2e-22 109.4 374 25.4
SEGI_08435 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 1.4e-18 98.2 164 34.8
SEGI_38586 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 1.4e-18 98.2 310 26.8
SEGI_41126 Sequoiadendron giganteum HOM05D002809 ORTHO05D012113 1.8e-16 91.3 373 24.7
SEGI_05332 Sequoiadendron giganteum HOM05D002809 ORTHO05D012113 1.1e-15 88.6 352 27.6
Lj4g0005095 Lotus japonicus HOM05D002809 ORTHO05D004563 3.1e-13 80.5 351 23.4
Pp3c15_17390 Physcomitrium patens HOM05D002809 ORTHO05D004939 4.0e-13 80.1 383 24.0
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 4.0e-13 80.1 349 24.6
SEGI_08933 Sequoiadendron giganteum HOM05D002809 ORTHO05D004563 4.0e-13 80.1 384 24.0
Nn5g28167 Nelumbo nucifera HOM05D002809 ORTHO05D004939 3.4e-12 77.0 367 24.3
Pp3c9_20960 Physcomitrium patens HOM05D002809 ORTHO05D004939 5.8e-12 76.3 378 23.3
Pp3c26_380 Physcomitrium patens HOM05D002809 ORTHO05D007546 1.3e-11 75.1 342 24.3
SEGI_19379 Sequoiadendron giganteum HOM05D041823 ORTHO05D386408 3.8e-11 73.6 368 25.8
ATR0561G142 Amborella trichopoda HOM05D002809 ORTHO05D004563 4.9e-11 73.2 353 23.5
Pp3c9_6080 Physcomitrium patens HOM05D002809 ORTHO05D004563 6.5e-11 72.8 376 24.5
Mapoly0063s0081 Marchantia polymorpha HOM05D002809 ORTHO05D004563 8.4e-11 72.4 316 25.9
SMO351G0091 Selaginella moellendorffii HOM05D005977 ORTHO05D007546 8.4e-11 72.4 354 24.0
Duzib251G0128 Durio zibethinus HOM05D002809 ORTHO05D004563 1.1e-10 72.0 353 22.9
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 2.5e-10 70.9 141 31.9
SEGI_24648 Sequoiadendron giganteum HOM05D041823 ORTHO05D386841 2.5e-10 70.9 289 25.6
CANSAT01G2827 Cannabis sativa HOM05D002809 ORTHO05D004563 3.2e-10 70.5 347 23.3
Mapoly0005s0140 Marchantia polymorpha HOM05D002809 ORTHO05D004563 7.1e-10 69.3 355 22.8
Lalb_Chr23g0278141 Lupinus albus HOM05D002809 ORTHO05D004563 9.3e-10 68.9 344 22.7
Duzib248G0261 Durio zibethinus HOM05D002809 ORTHO05D004563 1.6e-09 68.2 351 22.5
HanXRQChr05g0128691 Helianthus annuus HOM05D002809 ORTHO05D004563 1.6e-09 68.2 363 23.4
unitig_8.g3134 Utricularia gibba HOM05D002809 ORTHO05D004563 1.6e-09 68.2 354 20.1
Mapoly0186s0014 Marchantia polymorpha HOM05D004302 ORTHO05D004939 2.1e-09 67.8 182 28.0
SEGI_27472 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 2.1e-09 67.8 364 23.4
TAR381G0769 Trochodendron aralioides HOM05D003005 ORTHO05D004939 2.1e-09 67.8 371 23.5
MSTRG.498 Avicennia marina HOM05D002809 ORTHO05D004563 2.7e-09 67.4 368 23.4
MBI07_g18750_MAGBIO Magnolia biondii HOM05D002809 ORTHO05D004563 2.7e-09 67.4 352 22.2
SMO364G0869 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 2.7e-09 67.4 138 31.9
Duzib268G1054 Durio zibethinus HOM05D002809 ORTHO05D004563 3.5e-09 67.0 353 21.8
Gohir.A01G154500 Gossypium hirsutum HOM05D002809 ORTHO05D004563 3.5e-09 67.0 346 21.7
Nn3g16449 Nelumbo nucifera HOM05D002809 ORTHO05D004563 3.5e-09 67.0 346 22.3
Haze_12431 Corylus avellana HOM05D002809 ORTHO05D004563 4.6e-09 66.6 346 22.5
Gohir.D01G146700 Gossypium hirsutum HOM05D002809 ORTHO05D004563 4.6e-09 66.6 354 20.9
Gorai.002G182600 Gossypium raimondii HOM05D002809 ORTHO05D004563 4.6e-09 66.6 354 20.9
GSVIVG01010498001 Vitis vinifera HOM05D002809 ORTHO05D004563 6.0e-09 66.2 351 22.8
Dinv10947 Davidia involucrata HOM05D002809 ORTHO05D004563 7.9e-09 65.9 351 21.4
THA.LOC104807128 Tarenaya hassleriana HOM05D002809 ORTHO05D004563 7.9e-09 65.9 349 22.3
THA.LOC104807136 Tarenaya hassleriana HOM05D002809 ORTHO05D004563 7.9e-09 65.9 349 22.3
Thecc.02G206300 Theobroma cacao HOM05D002809 ORTHO05D004563 7.9e-09 65.9 352 20.7
Manes.12G010000 Manihot esculenta HOM05D002809 ORTHO05D004563 1.0e-08 65.5 346 21.1
Mapoly0190s0005 Marchantia polymorpha HOM05D004302 ORTHO05D004939 1.0e-08 65.5 360 22.5
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 1.0e-08 65.5 179 28.5
unitig_22.g6404 Utricularia gibba HOM05D002809 ORTHO05D004563 1.0e-08 65.5 369 19.8
Manes.13G010700 Manihot esculenta HOM05D002809 ORTHO05D004563 1.3e-08 65.1 357 22.1
CiPaw.06G103600 Carya illinoinensis HOM05D002809 ORTHO05D004563 1.8e-08 64.7 346 20.5
Pp3c11_18710 Physcomitrium patens HOM05D004302 ORTHO05D004939 1.8e-08 64.7 193 29.0
Sed0016657 Sechium edule HOM05D002809 ORTHO05D004563 1.8e-08 64.7 370 21.9
CsaV3_6G007070 Cucumis sativus L. HOM05D002809 ORTHO05D004563 2.3e-08 64.3 348 22.7
TAR371G1123 Trochodendron aralioides HOM05D002809 ORTHO05D004563 2.3e-08 64.3 355 23.1
VMungo1383G2061 Vigna mungo HOM05D002809 ORTHO05D004563 2.3e-08 64.3 343 20.4
Atru.chr11.2338 Acer truncatum HOM05D002809 ORTHO05D004563 3.0e-08 63.9 343 22.7
CiPaw.05G108500 Carya illinoinensis HOM05D002809 ORTHO05D004563 3.0e-08 63.9 350 21.4
COL.COLO4_20416 Corchorus olitorius HOM05D002809 ORTHO05D004563 3.0e-08 63.9 350 23.1
Pp3c25_9030 Physcomitrium patens HOM05D002809 ORTHO05D004939 3.0e-08 63.9 175 26.9
SEGI_41299 Sequoiadendron giganteum HOM05D025639 ORTHO05D384612 3.9e-08 63.5 172 26.2
AagrBONN_evm.TU.Sc2ySwM_228.2355 Anthoceros agrestis HOM05D002809 ORTHO05D007546 5.1e-08 63.2 373 23.9
Nn4g22302 Nelumbo nucifera HOM05D002809 ORTHO05D004563 5.1e-08 63.2 361 22.7
Aqoxy5G02276 Aquilegia oxysepala HOM05D002809 ORTHO05D004939 6.7e-08 62.8 145 28.3
Ca_16451_v3 Cicer arietinum L. HOM05D002809 ORTHO05D004563 6.7e-08 62.8 350 22.3
ClCG06G001130 Citrullus lanatus HOM05D002809 ORTHO05D004563 6.7e-08 62.8 348 22.4
Ciclev10031436m.g Citrus clementina HOM05D002809 ORTHO05D004563 6.7e-08 62.8 343 22.7
Glyma.11G251600 Glycine max HOM05D002809 ORTHO05D004563 6.7e-08 62.8 343 20.1
Peaxi162Scf00518g00033 Petunia axillaris HOM05D002809 ORTHO05D004563 6.7e-08 62.8 368 21.5
Solyc05g015520.3 Solanum lycopersicum HOM05D002809 ORTHO05D004563 6.7e-08 62.8 350 20.0
Rhsim12G0092200 Rhododendron simsii HOM05D002809 ORTHO05D004563 8.7e-08 62.4 371 20.2
Sopen12g034970 Solanum pennellii HOM05D002809 ORTHO05D004563 8.7e-08 62.4 350 20.0
Phvul.001G262700 Phaseolus vulgaris HOM05D002809 ORTHO05D004563 1.1e-07 62.0 343 20.4
Sc11g0000420 Simmondsia chinensis HOM05D002809 ORTHO05D004563 1.1e-07 62.0 348 22.4
arahy.Tifrunner.gnm1.ann1.8GYA0C Arachis hypogaea HOM05D002809 ORTHO05D004563 1.9e-07 61.2 347 21.6
CDE06G1895 Ceratophyllum demersum HOM05D004302 ORTHO05D007546 1.9e-07 61.2 136 32.4
SalBow2G0967 Salvia bowleyana HOM05D002809 ORTHO05D004563 1.9e-07 61.2 358 22.1
Mapoly0019s0019 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.5e-07 60.8 312 23.1
Medtr3g085160 Medicago truncatula HOM05D002809 ORTHO05D004563 2.5e-07 60.8 360 22.2
Oeu032833.1 Olea europaea HOM05D004302 ORTHO05D004939 2.5e-07 60.8 342 20.5
QL03p052448 Quercus lobata HOM05D002809 ORTHO05D004563 2.5e-07 60.8 357 20.7
SEGI_04012 Sequoiadendron giganteum HOM05D003005 ORTHO05D009091 2.5e-07 60.8 148 28.4
MSTRG.8011 Avicennia marina HOM05D002809 ORTHO05D004563 3.3e-07 60.5 356 21.1
Mapoly0014s0188 Marchantia polymorpha HOM05D002809 ORTHO05D004563 3.3e-07 60.5 139 30.2
Pp3c14_15770 Physcomitrium patens HOM05D003005 ORTHO05D004939 3.3e-07 60.5 164 28.0
TPR.G3302 Trifolium pratense HOM05D004302 ORTHO05D004939 3.3e-07 60.5 346 21.7
Medtr7g017400 Medicago truncatula HOM05D004302 ORTHO05D004939 4.3e-07 60.1 341 21.4
Sed0014031 Sechium edule HOM05D002809 ORTHO05D004563 4.3e-07 60.1 355 22.8
A03p07310 Brassica napus HOM05D004302 ORTHO05D004939 5.7e-07 59.7 375 21.6
BraA03t10054Z Brassica rapa HOM05D004302 ORTHO05D004939 5.7e-07 59.7 375 21.6
CAN.G70.10 Capsicum annuum HOM05D002809 ORTHO05D004563 5.7e-07 59.7 361 19.7
Cc11_g17010 Coffea canephora HOM05D002809 ORTHO05D004563 5.7e-07 59.7 346 22.0
ECA246G0607 Erigeron canadensis HOM05D002809 ORTHO05D004563 5.7e-07 59.7 341 21.7
Mapoly0002s0187 Marchantia polymorpha HOM05D002809 ORTHO05D004563 5.7e-07 59.7 161 28.0
Psat3g208160 Pisum sativum HOM05D004302 ORTHO05D004939 5.7e-07 59.7 340 21.2
Sabra01G0041300 Salix brachista HOM05D002809 ORTHO05D004563 5.7e-07 59.7 355 21.7
C03p08380 Brassica napus HOM05D004302 ORTHO05D004939 7.4e-07 59.3 375 21.6
BolC3t13345H Brassica oleracea HOM05D004302 ORTHO05D004939 7.4e-07 59.3 375 21.6
Os01g0923900 Oryza sativa ssp. japonica HOM05D002809 ORTHO05D004563 7.4e-07 59.3 355 20.8
Potri.001G057100 Populus trichocarpa HOM05D002809 ORTHO05D004563 7.4e-07 59.3 355 20.6
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 7.4e-07 59.3 346 22.5
PGSC0003DMG400034305 Solanum tuberosum HOM05D002809 ORTHO05D004563 7.4e-07 59.3 350 19.7
HPP92_007765 Vanilla planifolia HOM05D007423 ORTHO05D009091 7.4e-07 59.3 308 24.4
AagrBONN_evm.TU.Sc2ySwM_344.5233 Anthoceros agrestis HOM05D008059 ORTHO05D009361 9.6e-07 58.9 193 29.0
Potri.003G171300 Populus trichocarpa HOM05D002809 ORTHO05D004563 9.6e-07 58.9 346 20.8
SMO304G0062 Selaginella moellendorffii HOM05D003005 ORTHO05D004170 9.6e-07 58.9 164 28.0
Pp3c16_10660 Physcomitrium patens HOM05D002809 ORTHO05D012113 1.3e-06 58.5 175 25.1
ATR0584G262 Amborella trichopoda HOM05D002809 ORTHO05D017280 1.6e-06 58.2 157 29.9
Mapoly0033s0124 Marchantia polymorpha HOM05D004302 ORTHO05D004939 1.6e-06 58.2 138 29.0
Pp3c9_20230 Physcomitrium patens HOM05D004302 ORTHO05D009385 1.6e-06 58.2 162 29.0
SMO239G0172 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 2.1e-06 57.8 142 28.2
TPR.G17783 Trifolium pratense HOM05D002809 ORTHO05D004563 2.1e-06 57.8 353 20.1
VMungo1383G1338 Vigna mungo HOM05D004302 ORTHO05D004939 2.1e-06 57.8 350 22.0
Aa31LG7G9860 Aethionema arabicum HOM05D002809 ORTHO05D004563 2.8e-06 57.4 390 23.1
BcaB01g05031 Brassica carinata HOM05D004302 ORTHO05D004939 2.8e-06 57.4 194 24.7
PSO478G2444 Papaver somniferum HOM05D004302 ORTHO05D004939 2.8e-06 57.4 346 22.3
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 3.7e-06 57.0 196 25.5
DCAR_005370 Daucus carota HOM05D003005 ORTHO05D004170 3.7e-06 57.0 150 30.7
Psat5g096960 Pisum sativum HOM05D002809 ORTHO05D004563 3.7e-06 57.0 357 21.8
TPR.G34562 Trifolium pratense HOM05D002809 ORTHO05D004563 3.7e-06 57.0 348 20.1
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 4.8e-06 56.6 349 22.9
Oeu049142.1 Olea europaea HOM05D002809 ORTHO05D004563 4.8e-06 56.6 335 21.2
Ca_06955_v3 Cicer arietinum L. HOM05D004302 ORTHO05D004939 6.2e-06 56.2 162 25.9
Dinv33879 Davidia involucrata HOM05D004302 ORTHO05D004939 6.2e-06 56.2 346 22.0
Mapoly0025s0090 Marchantia polymorpha HOM05D002809 ORTHO05D004563 6.2e-06 56.2 375 22.7
Nn8g38521 Nelumbo nucifera HOM05D006415 ORTHO05D008549 6.2e-06 56.2 168 27.4
Prupe.2G181900 Prunus persica HOM05D003005 ORTHO05D004170 6.2e-06 56.2 150 29.3
AagrBONN_evm.TU.Sc2ySwM_228.4047 Anthoceros agrestis HOM05D004302 ORTHO05D010190 8.2e-06 55.8 176 26.1
MD01G1073800 Malus domestica HOM05D003005 ORTHO05D004170 8.2e-06 55.8 150 30.7
Mapoly0137s0025 Marchantia polymorpha HOM05D004302 ORTHO05D004939 8.2e-06 55.8 408 21.1
SEGI_04786 Sequoiadendron giganteum HOM05D003005 ORTHO05D026051 8.2e-06 55.8 137 27.7


User provided reference genes

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