Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.1e-180 635.6 324 100.0
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 6.1e-111 404.8 184 100.0
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.8e-110 403.3 308 61.7
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 6.8e-110 401.4 317 63.1
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.7e-108 396.7 321 60.4
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 9.1e-107 391.0 316 60.1
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 6.5e-105 384.8 316 59.5
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 7.2e-104 381.3 325 59.7
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 4.7e-103 378.6 318 58.5
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.0e-102 377.5 316 57.3
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.4e-102 377.1 316 57.9
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 5.2e-102 375.2 324 54.9
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 8.8e-102 374.4 317 58.7
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 8.8e-102 374.4 316 58.2
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.5e-101 373.6 316 57.6
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 2.6e-101 372.9 316 56.3
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 2.6e-101 372.9 321 55.1
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.6e-101 372.9 321 54.8
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 3.4e-101 372.5 315 56.8
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 9.8e-101 370.9 316 57.0
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.7e-100 370.2 316 55.1
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 2.2e-100 369.8 316 57.6
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 3.7e-100 369.0 316 56.0
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.4e-99 367.1 316 55.4
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.8e-99 366.7 316 56.3
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.8e-99 366.7 319 55.2
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 4.1e-99 365.5 316 53.8
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 4.1e-99 365.5 316 59.5
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 7.0e-99 364.8 316 55.7
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 7.0e-99 364.8 326 55.5
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 9.1e-99 364.4 316 56.0
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.2e-98 364.0 316 55.7
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.6e-98 363.6 316 54.7
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 1.6e-98 363.6 316 54.1
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 2.0e-98 363.2 316 54.1
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 2.0e-98 363.2 322 55.9
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 2.0e-98 363.2 316 53.8
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.0e-98 363.2 316 54.7
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 2.0e-98 363.2 316 56.0
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 2.7e-98 362.8 316 56.0
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 2.7e-98 362.8 316 58.5
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 3.5e-98 362.5 317 55.8
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 4.5e-98 362.1 316 52.8
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 4.5e-98 362.1 316 57.3
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 5.9e-98 361.7 320 56.6
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 7.7e-98 361.3 316 55.4
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.0e-97 360.9 317 53.3
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 1.7e-97 360.1 317 53.9
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 3.8e-97 359.0 317 53.3
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 6.6e-97 358.2 319 55.8
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 6.6e-97 358.2 321 55.1
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 8.6e-97 357.8 317 53.0
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 8.6e-97 357.8 317 53.0
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 8.6e-97 357.8 317 53.0
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.5e-96 357.1 322 54.7
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.5e-96 357.1 316 55.1
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 4.2e-96 355.5 316 55.1
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 5.5e-96 355.1 316 56.0
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 5.5e-96 355.1 318 53.8
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 5.5e-96 355.1 319 53.6
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 7.2e-96 354.8 321 53.3
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 7.2e-96 354.8 318 54.1
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 9.5e-96 354.4 316 54.4
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.2e-95 354.0 316 54.7
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.1e-95 353.2 318 53.5
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 2.8e-95 352.8 316 54.4
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 6.1e-95 351.7 316 53.5
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 8.0e-95 351.3 316 54.7
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 2.3e-94 349.7 316 56.3
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 3.0e-94 349.4 317 54.3
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 4.0e-94 349.0 318 54.4
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 6.8e-94 348.2 316 56.3
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 8.9e-94 347.8 316 53.8
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.2e-93 347.4 316 54.7
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 1.2e-93 347.4 316 53.8
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.0e-93 346.7 316 53.5
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 4.4e-93 345.5 217 67.3
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 5.7e-93 345.1 317 53.3
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 2.8e-92 342.8 321 53.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 3.7e-92 342.4 316 55.4
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.9e-92 342.0 218 69.7
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.1e-91 340.9 308 53.6
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.4e-91 340.5 316 52.5
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 9.2e-91 337.8 316 52.2
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 1.2e-90 337.4 316 52.8
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 1.2e-90 337.4 316 53.5
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.6e-90 337.0 239 62.8
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 1.7e-89 333.6 316 53.2
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 5.0e-89 332.0 317 51.7
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 8.6e-89 331.3 223 62.3
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 8.6e-89 331.3 318 51.9
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 8.6e-89 331.3 317 51.7
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 4.3e-88 328.9 350 49.4
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.2e-87 327.4 316 53.2
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.7e-87 325.5 316 53.5
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.8e-86 323.6 316 52.8
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 5.2e-86 322.0 316 52.8
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 4.4e-85 318.9 321 49.8
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.7e-84 315.8 316 51.6
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 1.9e-83 313.5 324 50.0
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 7.0e-83 311.6 316 50.9
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.2e-83 311.2 324 49.7
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 4.3e-80 302.4 278 56.1
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.2e-79 300.8 212 60.8
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 4.7e-79 298.9 184 70.1
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 4.7e-79 298.9 200 66.5
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 6.2e-79 298.5 316 48.4
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.8e-78 297.0 316 49.4
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 2.4e-75 286.6 183 65.6
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.6e-74 283.9 209 60.8
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 2.7e-74 283.1 316 47.8
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 5.6e-64 248.8 307 39.4
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 4.9e-60 235.7 273 52.4
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 3.9e-57 226.1 332 38.3
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.1e-54 218.0 318 39.0
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.9e-51 207.2 331 39.0
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 4.2e-51 206.1 386 34.2
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 3.7e-39 166.4 111 58.6
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 2.2e-36 157.1 271 38.4
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 4.2e-35 152.9 462 27.3
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 6.2e-31 139.0 135 51.9
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 1.4e-30 137.9 95 57.9
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 6.1e-18 95.9 156 37.2
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.8e-14 84.3 156 40.4
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.0e-13 80.9 132 38.6
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 3.7e-07 60.1 37 59.5


User provided reference genes

Program Settings