Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.2e-283 979.2 513 100.0
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 5.6e-50 203.0 565 33.6
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 9.5e-50 202.2 470 35.7
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 6.0e-44 183.0 316 42.1
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.3e-43 181.8 523 35.4
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 2.8e-41 174.1 231 46.8
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.3e-40 171.0 306 40.5
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.3e-40 171.0 306 40.5
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 5.2e-40 169.9 458 34.9
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.5e-39 168.3 296 42.9
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 2.0e-39 167.9 324 41.0
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 2.9e-38 164.1 295 42.0
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 4.1e-37 160.2 501 33.9
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 1.2e-36 158.7 518 31.1
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.5e-36 157.1 428 32.5
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 4.6e-36 156.8 321 42.1
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 7.8e-36 156.0 418 33.3
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 3.0e-35 154.1 130 58.5
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 6.6e-35 152.9 288 39.2
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.1e-34 152.1 216 47.2
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 5.6e-34 149.8 212 46.2
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 9.6e-34 149.1 304 37.2
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.2e-33 148.7 272 37.9
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 1.2e-33 148.7 268 39.2
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 2.8e-33 147.5 533 31.5
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 3.6e-33 147.1 316 34.5
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 4.7e-33 146.7 215 46.5
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 1.8e-32 144.8 291 38.1
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 2.4e-32 144.4 215 47.0
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 4.0e-32 143.7 223 45.3
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.2e-32 143.3 213 45.1
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 5.2e-32 143.3 311 35.4
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 8.9e-32 142.5 305 37.0
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.2e-31 142.1 436 31.0
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 2.0e-31 141.4 215 41.9
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 2.0e-31 141.4 516 31.2
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 2.0e-31 141.4 248 39.5
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.6e-31 141.0 252 40.1
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.6e-31 141.0 252 40.1
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 3.4e-31 140.6 298 36.6
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 3.4e-31 140.6 252 40.1
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 3.4e-31 140.6 239 39.7
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 5.8e-31 139.8 216 45.4
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 5.8e-31 139.8 214 45.8
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 7.6e-31 139.4 215 42.8
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 9.9e-31 139.0 330 34.2
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 9.9e-31 139.0 307 36.5
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 1.3e-30 138.7 298 36.6
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 1.3e-30 138.7 223 40.4
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.7e-30 138.3 215 44.7
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 2.9e-30 137.5 216 42.6
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 2.9e-30 137.5 291 37.5
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 3.8e-30 137.1 223 42.6
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 3.8e-30 137.1 252 39.7
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 3.8e-30 137.1 214 42.1
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 3.8e-30 137.1 217 46.1
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 3.8e-30 137.1 215 43.7
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 6.4e-30 136.3 170 49.4
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 6.4e-30 136.3 275 37.8
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 6.4e-30 136.3 297 38.0
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 8.4e-30 136.0 235 39.1
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.1e-29 135.6 518 29.5
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.1e-29 135.6 291 38.1
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.1e-29 135.6 199 44.2
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 1.1e-29 135.6 214 41.6
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.4e-29 135.2 523 30.2
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 1.4e-29 135.2 296 36.1
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 2.4e-29 134.4 241 41.5
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 3.2e-29 134.0 223 40.4
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 3.2e-29 134.0 223 40.4
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.2e-29 133.7 248 39.1
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 5.4e-29 133.3 222 39.6
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 7.1e-29 132.9 212 42.5
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 9.3e-29 132.5 315 34.6
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 1.2e-28 132.1 215 43.7
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 1.2e-28 132.1 215 43.7
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.6e-28 131.7 216 40.7
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 2.1e-28 131.3 293 36.2
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 2.7e-28 131.0 219 38.8
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 2.7e-28 131.0 248 36.3
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.7e-28 131.0 254 38.2
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 4.6e-28 130.2 219 38.8
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 4.6e-28 130.2 224 39.7
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 6.0e-28 129.8 136 52.9
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 6.0e-28 129.8 253 38.7
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.0e-27 129.0 216 40.7
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.0e-27 129.0 217 43.8
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.3e-27 128.6 211 43.6
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.3e-27 128.6 234 39.7
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 2.3e-27 127.9 219 37.4
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 6.6e-27 126.3 212 38.2
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 6.6e-27 126.3 214 40.7
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 8.7e-27 125.9 217 38.2
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 8.7e-27 125.9 132 51.5
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 8.7e-27 125.9 220 41.4
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 2.5e-26 124.4 212 41.0
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 2.5e-26 124.4 219 37.4
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 5.6e-26 123.2 221 38.0
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 7.3e-26 122.9 219 38.4
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 7.3e-26 122.9 172 45.9
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.6e-26 122.5 222 41.0
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.6e-26 122.5 222 41.0
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 1.6e-25 121.7 221 37.6
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 2.1e-25 121.3 219 37.9
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 2.1e-25 121.3 219 37.9
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 2.8e-25 120.9 221 37.1
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 2.8e-25 120.9 179 44.7
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 3.6e-25 120.6 289 31.5
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 6.2e-25 119.8 241 34.4
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 6.2e-25 119.8 219 37.9
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 6.2e-25 119.8 182 39.6
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 6.2e-25 119.8 280 34.3
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 8.1e-25 119.4 220 36.8
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 8.1e-25 119.4 216 39.8
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.8e-24 118.2 513 27.3
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 3.1e-24 117.5 219 39.7
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 5.3e-24 116.7 219 37.4
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.2e-23 115.5 226 44.2
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.2e-23 115.5 220 39.5
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 4.5e-23 113.6 219 36.1
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 7.6e-23 112.8 338 30.8
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 9.9e-23 112.5 219 35.6
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 2.2e-22 111.3 219 35.6
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 8.4e-22 109.4 231 36.4
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.1e-21 109.0 321 33.6
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.4e-21 108.6 333 31.8
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 1.9e-21 108.2 189 41.3
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.9e-21 108.2 221 38.5
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.4e-16 91.3 62 75.8
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 2.4e-16 91.3 185 37.8
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.5e-15 87.0 136 44.1
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.7e-14 85.1 165 39.4
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 6.4e-14 83.2 173 37.6
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 9.3e-13 79.3 137 38.0
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.6e-12 77.0 194 35.6
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 3.9e-11 73.9 62 67.7
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.1e-11 73.6 192 35.4
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 4.3e-10 70.5 172 34.9
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 4.8e-09 67.0 187 31.6
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.9e-06 57.8 171 34.5
Cre01.g057061 Chlamydomonas reinhardtii HOM05D003594 ORTHO05D004268 6.5e-06 56.6 121 36.4


User provided reference genes

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