Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05193 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 0.0e+00 2028.8 1044 100.0
COL.COLO4_04501 Corchorus olitorius HOM05D006091 ORTHO05D006421 2.2e-242 843.2 1038 47.5
TWI75G0482 Tripterygium wilfordii HOM05D006091 ORTHO05D006421 2.8e-242 842.8 1021 48.3
QL09p045696 Quercus lobata HOM05D006091 ORTHO05D006421 4.8e-242 842.0 1022 47.8
FvH4_2g17990 Fragaria vesca HOM05D006091 ORTHO05D006421 5.3e-241 838.6 1028 47.6
Thecc.01G213100 Theobroma cacao HOM05D006091 ORTHO05D006421 7.0e-241 838.2 1020 46.9
Dinv12805 Davidia involucrata HOM05D006091 ORTHO05D006421 3.5e-240 835.9 1025 47.6
ATR0609G072 Amborella trichopoda HOM05D006091 ORTHO05D006421 7.7e-240 834.7 971 49.9
MD05G1163900 Malus domestica HOM05D006091 ORTHO05D006421 7.7e-240 834.7 1031 47.4
CANSAT01G2939 Cannabis sativa HOM05D006091 ORTHO05D006421 2.9e-239 832.8 1016 47.7
Actinidia23366 Actinidia chinensis HOM05D006091 ORTHO05D006421 5.0e-239 832.0 1023 47.3
Gohir.A11G141600 Gossypium hirsutum HOM05D006091 ORTHO05D006421 8.5e-239 831.2 1020 46.8
Ciclev10030603m.g Citrus clementina HOM05D006091 ORTHO05D006421 2.5e-238 829.7 1030 46.8
Aqoxy2G03964 Aquilegia oxysepala HOM05D006091 ORTHO05D006421 4.2e-238 828.9 1027 48.2
RcHm_v2.0_Chr6g0283291 Rosa chinensis HOM05D006091 ORTHO05D006421 1.6e-237 827.0 1034 46.7
Gorai.007G158500 Gossypium raimondii HOM05D006091 ORTHO05D006421 6.1e-237 825.1 1022 46.6
Potri.002G249400 Populus trichocarpa HOM05D006091 ORTHO05D006421 3.0e-236 822.8 1026 46.8
Atru.chr6.1598 Acer truncatum HOM05D006091 ORTHO05D006421 6.7e-236 821.6 1051 46.1
FAN24G1597 Fragaria x ananassa HOM05D006091 ORTHO05D006421 1.2e-235 820.8 1028 47.2
Gohir.D11G147900 Gossypium hirsutum HOM05D006091 ORTHO05D006421 2.6e-235 819.7 1022 46.5
PSO017G2440 Papaver somniferum HOM05D006091 ORTHO05D006421 2.6e-235 819.7 1033 47.3
Psat0s4060g0040 Pisum sativum HOM05D006091 ORTHO05D006421 3.3e-235 819.3 1025 46.1
PSO675G5723 Papaver somniferum HOM05D006091 ORTHO05D006421 9.7e-235 817.8 1038 46.9
CiPaw.13G053400 Carya illinoinensis HOM05D006091 ORTHO05D006421 1.3e-234 817.4 961 48.3
MSTRG.17976 Avicennia marina HOM05D006091 ORTHO05D006421 4.8e-234 815.5 1023 46.4
CsaV3_7G026640 Cucumis sativus L. HOM05D006091 ORTHO05D006421 1.1e-233 814.3 1017 46.6
Gorai.001G102700 Gossypium raimondii HOM05D006091 ORTHO05D006421 2.4e-233 813.1 1019 46.4
CSS0012975 Camellia sinensis var. sinensis HOM05D006091 ORTHO05D006421 3.1e-233 812.8 1024 46.5
Rhsim13G0051700 Rhododendron simsii HOM05D006091 ORTHO05D006421 3.1e-233 812.8 1047 45.7
Ca_23191_v3 Cicer arietinum L. HOM05D006091 ORTHO05D006421 4.1e-233 812.4 1024 46.3
Gohir.D07G095400 Gossypium hirsutum HOM05D006091 ORTHO05D006421 9.1e-233 811.2 1020 46.2
BolC5t34643H Brassica oleracea HOM05D006091 ORTHO05D006421 1.6e-232 810.4 1007 46.5
MELO3C021115.2 Cucumis melo HOM05D006091 ORTHO05D006421 2.0e-232 810.1 1023 45.9
vmacro02807 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 2.0e-232 810.1 1049 46.8
Glyma.03G089000 Glycine max HOM05D006091 ORTHO05D006421 5.9e-232 808.5 1027 46.1
Gohir.A07G090700 Gossypium hirsutum HOM05D006091 ORTHO05D006421 1.7e-231 807.0 1017 45.9
Oeu003643.1 Olea europaea HOM05D006091 ORTHO05D006421 1.7e-231 807.0 1044 46.3
Sopen09g020500 Solanum pennellii HOM05D006091 ORTHO05D006421 3.8e-231 805.8 1023 47.1
FAN27G2037 Fragaria x ananassa HOM05D006091 ORTHO05D006421 7.2e-230 801.6 1042 46.2
BraA05t22809Z Brassica rapa HOM05D006091 ORTHO05D006421 1.2e-229 800.8 1010 46.1
A05p40780 Brassica napus HOM05D006091 ORTHO05D006421 2.7e-229 799.7 1010 46.0
Migut.N00655 Erythranthe guttata HOM05D006091 ORTHO05D006421 1.4e-228 797.3 1024 45.9
PGR083G0226 Punica granatum HOM05D006091 ORTHO05D006421 1.4e-228 797.3 971 46.3
Sp3g06320 Schrenkiella parvula HOM05D006091 ORTHO05D006421 1.4e-228 797.3 1020 46.1
Sed0015233 Sechium edule HOM05D006091 ORTHO05D006421 4.0e-228 795.8 1022 45.8
DCAR_004762 Daucus carota HOM05D006091 ORTHO05D006421 5.2e-228 795.4 1026 44.5
Sc05g0001800 Simmondsia chinensis HOM05D006091 ORTHO05D006421 8.8e-228 794.7 956 48.2
Lalb_Chr13g0291021 Lupinus albus HOM05D006091 ORTHO05D006421 1.2e-227 794.3 1025 45.7
THA.LOC104802652 Tarenaya hassleriana HOM05D006091 ORTHO05D006421 2.0e-227 793.5 1024 45.9
C05p59890 Brassica napus HOM05D006091 ORTHO05D006421 5.7e-227 792.0 1007 45.8
Carub.0003s0694 Capsella rubella HOM05D006091 ORTHO05D006421 1.7e-226 790.4 1015 46.3
Medtr8g011610 Medicago truncatula HOM05D006091 ORTHO05D006421 1.7e-226 790.4 1027 44.7
SGA_v2.0_scaffold77G25288 Striga asiatica HOM05D006091 ORTHO05D006421 2.2e-226 790.0 1042 45.8
ECA236G3389 Erigeron canadensis HOM05D006091 ORTHO05D006421 4.8e-226 788.9 1029 44.8
arahy.Tifrunner.gnm1.ann1.ZLM6RM Arachis hypogaea HOM05D006091 ORTHO05D006421 6.3e-226 788.5 1028 45.7
FAN15G2626 Fragaria x ananassa HOM05D006091 ORTHO05D006421 1.1e-225 787.7 1040 46.2
AUR62001194 Chenopodium quinoa HOM05D006091 ORTHO05D006421 1.8e-225 786.9 1040 45.6
AUR62022134 Chenopodium quinoa HOM05D006091 ORTHO05D006421 3.1e-225 786.2 1039 45.6
HanXRQChr04g0107951 Helianthus annuus HOM05D006091 ORTHO05D006421 5.4e-225 785.4 1029 45.5
AL3G18700 Arabidopsis lyrata HOM05D006091 ORTHO05D006421 9.1e-225 784.6 1013 46.2
Aa31LG5G17970 Aethionema arabicum HOM05D006091 ORTHO05D006421 2.7e-224 783.1 1016 45.8
Cc01_g16310 Coffea canephora HOM05D006091 ORTHO05D006421 7.7e-224 781.6 1030 45.7
SMO117G0101 Selaginella moellendorffii HOM05D006091 ORTHO05D006421 5.0e-223 778.9 1025 46.1
Lsat_1_v5_gn_8_88561 Lactuca sativa HOM05D006091 ORTHO05D006421 8.5e-223 778.1 1024 45.6
Nitab4.5_0000038g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 3.2e-222 776.2 1023 46.1
AT3G07400 Arabidopsis thaliana HOM05D006091 ORTHO05D006421 1.6e-221 773.9 1015 45.6
CiPaw.14G042600 Carya illinoinensis HOM05D006091 ORTHO05D006421 6.1e-221 771.9 1032 45.0
Solyc09g056350.4 Solanum lycopersicum HOM05D006091 ORTHO05D006421 8.0e-221 771.5 1020 45.7
Thhalv10019992m.g Eutrema salsugineum HOM05D006091 ORTHO05D006421 1.0e-220 771.2 1010 45.1
Manes.12G052100 Manihot esculenta HOM05D006091 ORTHO05D006421 4.0e-220 769.2 938 47.8
arahy.Tifrunner.gnm1.ann1.23KP9R Arachis hypogaea HOM05D006091 ORTHO05D006421 1.2e-219 767.7 977 46.3
Lj2C1118G19 Lonicera japonica HOM05D006091 ORTHO05D006421 2.2e-218 763.5 1054 44.4
Pp3c23_8470 Physcomitrium patens HOM05D006091 ORTHO05D006421 2.8e-218 763.1 1026 44.7
Eucgr.H00733 Eucalyptus grandis HOM05D006091 ORTHO05D006421 3.7e-218 762.7 975 46.5
Nn1g08059 Nelumbo nucifera HOM05D006091 ORTHO05D006421 1.1e-217 761.1 937 46.9
Lj3g0004892 Lotus japonicus HOM05D006091 ORTHO05D006421 2.7e-216 756.5 1022 44.1
Mapoly0057s0040 Marchantia polymorpha HOM05D006091 ORTHO05D006421 1.7e-215 753.8 1040 43.4
MD10G1153600 Malus domestica HOM05D006091 ORTHO05D006421 7.3e-214 748.4 1048 44.3
Hund18485 Selenicereus undatus HOM05D006091 ORTHO05D006421 1.6e-213 747.3 1055 43.5
Zm00001eb202960 Zea mays HOM05D006091 ORTHO05D006421 1.2e-211 741.1 1030 44.4
Phvul.010G030600 Phaseolus vulgaris HOM05D006091 ORTHO05D006421 5.4e-209 732.3 885 47.1
HPP92_009934 Vanilla planifolia HOM05D006091 ORTHO05D006421 3.5e-208 729.6 1027 43.6
Peaxi162Scf00054g00172 Petunia axillaris HOM05D006091 ORTHO05D006421 5.6e-206 722.2 1027 43.0
Nitab4.5_0009574g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 1.0e-199 701.4 1258 37.2
Cpa.g.sc8.88 Carica papaya HOM05D006091 ORTHO05D006421 5.1e-191 672.5 1221 37.0
Glyma.16G084200 Glycine max HOM05D006091 ORTHO05D006421 2.2e-186 657.1 908 43.7
TPR.G1980 Trifolium pratense HOM05D006091 ORTHO05D006421 1.4e-185 654.4 803 46.8
Ah.08g218720 Amaranthus hybridus HOM05D006091 ORTHO05D006421 2.1e-184 650.6 1040 41.3
unitig_699.g19751 Utricularia gibba HOM05D006091 ORTHO05D006421 4.8e-173 612.8 1023 40.2
Prupe.8G192400 Prunus persica HOM05D006091 ORTHO05D006421 1.5e-150 538.1 957 36.8
GSVIVG01002194001 Vitis vinifera HOM05D006091 ORTHO05D006421 4.5e-131 473.4 512 52.5
Haze_03314 Corylus avellana HOM05D006091 ORTHO05D006421 2.5e-129 467.6 526 51.3
Hma1.2p1_2027F.1_g311640 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 2.1e-128 464.5 504 51.4
SEGI_30787 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 3.6e-128 463.8 468 55.1
CAN.G99.2 Capsicum annuum HOM05D006091 ORTHO05D006421 1.1e-126 458.8 698 40.4
TAR362G0363 Trochodendron aralioides HOM05D006091 ORTHO05D006421 4.4e-126 456.8 487 52.4
EL10Ac7g17981 Beta vulgaris HOM05D006091 ORTHO05D006421 2.8e-109 401.0 499 48.5
TAR362G0288 Trochodendron aralioides HOM05D006091 ORTHO05D006421 4.5e-107 393.7 528 43.6
ClCG09G008430 Citrullus lanatus HOM05D006091 ORTHO05D006421 2.2e-101 374.8 524 41.8
CARHR082040 Cardamine hirsuta HOM05D006091 ORTHO05D006421 1.4e-100 372.1 536 41.0
GSVIVG01005280001 Vitis vinifera HOM05D006091 ORTHO05D006421 7.0e-92 343.2 468 43.8
Os02g0481700 Oryza sativa ssp. japonica HOM05D006091 ORTHO05D006421 2.0e-91 341.7 530 40.4
Hma1.2p1_0405F.1_g145830 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 1.3e-90 339.0 523 40.9
Hma1.2p1_2126F.1_g314575 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 1.3e-90 339.0 523 40.9
Hma1.2p1_0405F.1_g145840 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 1.5e-89 335.5 516 41.1
Hma1.2p1_2126F.1_g314577 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 1.5e-89 335.5 516 41.1
Haze_03313 Corylus avellana HOM05D006091 ORTHO05D006421 6.6e-66 256.9 439 36.4
CDE05G1549 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 9.3e-60 236.5 446 36.3
CBR_g37499 Chara braunii HOM05D006091 ORTHO05D000002 1.7e-58 232.3 368 40.5
SEGI_39275 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 1.8e-55 222.2 251 50.6
ECA246G1360 Erigeron canadensis HOM05D006091 ORTHO05D006421 9.3e-36 156.8 137 56.9
RcHm_v2.0_Chr6g0283341 Rosa chinensis HOM05D006091 ORTHO05D006421 4.6e-35 154.5 131 60.3
Cre06.g275150 Chlamydomonas reinhardtii HOM05D006091 ORTHO05D006421 1.3e-29 136.3 250 33.6
CBR_g54770 Chara braunii HOM05D006091 ORTHO05D006421 2.5e-25 122.1 176 42.0
Sp7g12380 Schrenkiella parvula HOM05D002557 ORTHO05D002563 1.0e-18 100.1 112 50.0
vmacro06989 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 9.7e-17 93.6 104 49.0
MCO04G344 Micromonas commoda HOM05D006091 ORTHO05D006421 6.3e-16 90.9 144 38.2
CDE05G1763 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 7.0e-15 87.4 76 48.7
SMO364G0811 Selaginella moellendorffii HOM05D011999 ORTHO05D006421 4.5e-14 84.7 153 37.3
BcaC05g29533 Brassica carinata HOM05D006091 ORTHO05D006421 1.3e-13 83.2 116 40.5
CBR_g37496 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-13 80.9 127 37.8
PRCOL_00000494 Prasinoderma coloniale HOM05D006091 ORTHO05D006421 1.1e-12 80.1 267 27.0
CDE05G0609 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 6.1e-11 74.3 50 72.0
SEGI_35292 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 2.2e-08 65.9 113 38.1
HanXRQChr05g0154431 Helianthus annuus HOM05D000938 ORTHO05D001451 6.3e-08 64.3 87 34.5
AagrBONN_evm.TU.Sc2ySwM_117.1853 Anthoceros agrestis HOM05D018154 ORTHO05D015856 8.2e-08 63.9 114 35.1
Medtr3g078633 Medicago truncatula HOM05D000938 ORTHO05D001451 8.2e-08 63.9 240 29.2
Pp3c7_7930 Physcomitrium patens HOM05D018154 ORTHO05D015856 8.2e-08 63.9 112 36.6
ECA246G4314 Erigeron canadensis HOM05D000938 ORTHO05D001451 1.1e-07 63.5 87 33.3
Pp3c11_21990 Physcomitrium patens HOM05D018154 ORTHO05D015856 1.1e-07 63.5 112 34.8
Pp3c11_21996 Physcomitrium patens HOM05D018154 ORTHO05D015856 1.1e-07 63.5 112 34.8
SMO118G0083 Selaginella moellendorffii HOM05D018154 ORTHO05D015856 1.1e-07 63.5 112 36.6
Lalb_Chr08g0236121 Lupinus albus HOM05D000938 ORTHO05D001451 1.4e-07 63.2 99 37.4
Mapoly0081s0074 Marchantia polymorpha HOM05D018154 ORTHO05D015856 1.4e-07 63.2 112 35.7
Psat0s2917g0160 Pisum sativum HOM05D000938 ORTHO05D001451 1.4e-07 63.2 240 27.1
RcHm_v2.0_Chr7g0179871 Rosa chinensis HOM05D000938 ORTHO05D001451 1.8e-07 62.8 93 36.6
SEGI_41501 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.8e-07 62.8 109 39.4
Glyma.06G187200 Glycine max HOM05D000938 ORTHO05D001451 2.4e-07 62.4 87 39.1
SEGI_01095 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 2.4e-07 62.4 110 37.3
SEGI_20099 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 2.4e-07 62.4 110 37.3
Nn5g28429 Nelumbo nucifera HOM05D000938 ORTHO05D001451 4.1e-07 61.6 132 32.6
arahy.Tifrunner.gnm1.ann1.A0TJ2P Arachis hypogaea HOM05D000938 ORTHO05D001451 5.3e-07 61.2 197 28.9
VMungo1309G1144 Vigna mungo HOM05D000938 ORTHO05D001451 5.3e-07 61.2 200 30.5
MD14G1188600 Malus domestica HOM05D000938 ORTHO05D001451 7.0e-07 60.8 82 35.4
Phvul.009G183000 Phaseolus vulgaris HOM05D000938 ORTHO05D001451 7.0e-07 60.8 125 36.8
SMO118G0542 Selaginella moellendorffii HOM05D000938 ORTHO05D001451 7.0e-07 60.8 80 37.5
arahy.Tifrunner.gnm1.ann1.A2IS88 Arachis hypogaea HOM05D000938 ORTHO05D001451 9.1e-07 60.5 195 28.2
HanXRQChr05g0151521 Helianthus annuus HOM05D000938 ORTHO05D001451 9.1e-07 60.5 86 34.9
HanXRQChr05g0151531 Helianthus annuus HOM05D000938 ORTHO05D001451 9.1e-07 60.5 87 35.6
MBI07_g21346_MAGBIO Magnolia biondii HOM05D006091 ORTHO05D006421 9.1e-07 60.5 51 60.8
SEGI_02757 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 9.1e-07 60.5 190 27.4
MBI03_g28477_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D008663 1.2e-06 60.1 80 40.0
Potri.012G074700 Populus trichocarpa HOM05D000938 ORTHO05D001451 1.2e-06 60.1 118 34.7
SEGI_13315 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 1.2e-06 60.1 92 39.1
RcHm_v2.0_Chr2g0170571 Rosa chinensis HOM05D000938 ORTHO05D001451 2.6e-06 58.9 99 36.4
SMO263G0014 Selaginella moellendorffii HOM05D000938 ORTHO05D001451 2.6e-06 58.9 78 37.2
SEGI_33350 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 2.6e-06 58.9 86 38.4
TPR.G14289 Trifolium pratense HOM05D000938 ORTHO05D001451 2.6e-06 58.9 87 36.8
TWI39G0860 Tripterygium wilfordii HOM05D000938 ORTHO05D001451 2.6e-06 58.9 81 38.3
arahy.Tifrunner.gnm1.ann1.R5RNX8 Arachis hypogaea HOM05D000938 ORTHO05D001451 3.5e-06 58.5 128 28.9
Gohir.A12G199900 Gossypium hirsutum HOM05D000938 ORTHO05D001451 3.5e-06 58.5 117 35.0
Gohir.D12G202600 Gossypium hirsutum HOM05D000938 ORTHO05D001451 3.5e-06 58.5 114 35.1
Lsat_1_v5_gn_5_18140 Lactuca sativa HOM05D000938 ORTHO05D001451 4.5e-06 58.2 183 27.9
Lj1g0027652 Lotus japonicus HOM05D000938 ORTHO05D001451 4.5e-06 58.2 214 25.7
SalBow7G0977 Salvia bowleyana HOM05D000938 ORTHO05D001451 4.5e-06 58.2 86 36.0
SEGI_19951 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 4.5e-06 58.2 109 36.7
SEGI_28514 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 4.5e-06 58.2 89 39.3
SEGI_40198 Sequoiadendron giganteum HOM05D018154 ORTHO05D015856 4.5e-06 58.2 170 27.6
Cpa.g.sc35.21 Carica papaya HOM05D000938 ORTHO05D001451 5.9e-06 57.8 87 31.0
Gorai.008G217600 Gossypium raimondii HOM05D000938 ORTHO05D001451 5.9e-06 57.8 114 35.1
Nn4g22948 Nelumbo nucifera HOM05D000938 ORTHO05D001451 5.9e-06 57.8 114 33.3
Sed0023408 Sechium edule HOM05D000938 ORTHO05D001451 5.9e-06 57.8 130 33.8
SEGI_39989 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 5.9e-06 57.8 85 38.8
TAR629G3034 Trochodendron aralioides HOM05D000938 ORTHO05D003373 5.9e-06 57.8 86 38.4
Actinidia06582 Actinidia chinensis HOM05D000938 ORTHO05D001451 7.7e-06 57.4 85 36.5
Prupe.5G181000 Prunus persica HOM05D000938 ORTHO05D001451 7.7e-06 57.4 80 33.8
QL10p041154 Quercus lobata HOM05D000938 ORTHO05D001451 7.7e-06 57.4 107 34.6
SEGI_17686 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 7.7e-06 57.4 80 40.0


User provided reference genes

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