Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05062 Sequoiadendron giganteum HOM05D002883 ORTHO05D003116 1.6e-103 379.4 187 100.0
SEGI_36271 Sequoiadendron giganteum HOM05D002883 ORTHO05D003116 9.4e-56 220.7 110 100.0
ATR0733G121 Amborella trichopoda HOM05D002883 ORTHO05D003116 3.6e-15 85.9 126 42.1
Cc08_g13190 Coffea canephora HOM05D002883 ORTHO05D003116 3.6e-15 85.9 130 43.8
Nitab4.5_0001989g0060 Nicotiana tabacum HOM05D002883 ORTHO05D003116 4.7e-15 85.5 129 43.4
Nitab4.5_0009809g0010 Nicotiana tabacum HOM05D002883 ORTHO05D003116 8.1e-15 84.7 129 43.4
Rhsim07G0101800 Rhododendron simsii HOM05D002883 ORTHO05D003116 3.1e-14 82.8 122 43.4
MELO3C013980.2 Cucumis melo HOM05D002883 ORTHO05D003116 6.8e-14 81.6 124 41.9
CsaV3_3G003140 Cucumis sativus L. HOM05D002883 ORTHO05D003116 6.8e-14 81.6 124 41.9
vmacro14044 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 8.9e-14 81.3 169 37.3
CSS0031440 Camellia sinensis var. sinensis HOM05D002883 ORTHO05D003116 1.2e-13 80.9 122 43.4
Ciclev10020688m.g Citrus clementina HOM05D002883 ORTHO05D003116 1.2e-13 80.9 129 41.1
Eucgr.E00472 Eucalyptus grandis HOM05D002883 ORTHO05D003116 1.2e-13 80.9 137 43.1
Sabra03G0079500 Salix brachista HOM05D002883 ORTHO05D003116 1.5e-13 80.5 138 40.6
Sed0011330 Sechium edule HOM05D002883 ORTHO05D003116 1.5e-13 80.5 113 44.2
CDE04G0571 Ceratophyllum demersum HOM05D000087 ORTHO05D003116 2.0e-13 80.1 129 44.2
ClCG10G003100 Citrullus lanatus HOM05D002883 ORTHO05D003116 2.0e-13 80.1 124 41.1
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 2.0e-13 80.1 143 40.6
MSTRG.18780 Avicennia marina HOM05D002883 ORTHO05D003116 2.6e-13 79.7 136 42.6
Hund14646 Selenicereus undatus HOM05D002883 ORTHO05D003116 2.6e-13 79.7 125 44.8
Manes.02G096400 Manihot esculenta HOM05D002883 ORTHO05D003116 3.4e-13 79.3 139 40.3
Migut.D02420 Erythranthe guttata HOM05D002883 ORTHO05D003116 7.6e-13 78.2 138 41.3
Nn4g26369 Nelumbo nucifera HOM05D002883 ORTHO05D003116 7.6e-13 78.2 140 42.1
CSS0024091 Camellia sinensis var. sinensis HOM05D002883 ORTHO05D003116 9.9e-13 77.8 122 42.6
Ca_07312_v3 Cicer arietinum L. HOM05D002883 ORTHO05D003116 9.9e-13 77.8 138 38.4
Dinv39083 Davidia involucrata HOM05D002883 ORTHO05D003116 9.9e-13 77.8 167 36.5
Solyc11g150100.1 Solanum lycopersicum HOM05D002883 ORTHO05D003116 1.3e-12 77.4 137 39.4
Sopen11g002170 Solanum pennellii HOM05D002883 ORTHO05D003116 1.3e-12 77.4 137 39.4
SGA_v2.0_scaffold7G03989 Striga asiatica HOM05D002883 ORTHO05D003116 1.7e-12 77.0 150 40.7
HanXRQChr13g0404691 Helianthus annuus HOM05D002883 ORTHO05D003116 2.2e-12 76.6 130 43.1
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 2.2e-12 76.6 129 41.1
HanXRQChr13g0404681 Helianthus annuus HOM05D002883 ORTHO05D003116 2.9e-12 76.3 129 43.4
Potri.003G114700 Populus trichocarpa HOM05D002883 ORTHO05D003116 2.9e-12 76.3 138 40.6
Cpa.g.sc29.96 Carica papaya HOM05D002883 ORTHO05D003116 3.7e-12 75.9 132 41.7
Haze_08609 Corylus avellana HOM05D002883 ORTHO05D003116 3.7e-12 75.9 124 42.7
Lj3g0022076 Lotus japonicus HOM05D002883 ORTHO05D003116 3.7e-12 75.9 139 38.1
VMungo1383G0048 Vigna mungo HOM05D002883 ORTHO05D003116 3.7e-12 75.9 149 38.3
Gorai.007G225400 Gossypium raimondii HOM05D002883 ORTHO05D003116 4.9e-12 75.5 139 40.3
Aqoxy4G00074 Aquilegia oxysepala HOM05D002883 ORTHO05D003116 6.4e-12 75.1 106 43.4
PGR042G2998 Punica granatum HOM05D002883 ORTHO05D003116 6.4e-12 75.1 137 40.1
PGSC0003DMG400000998 Solanum tuberosum HOM05D002883 ORTHO05D003116 6.4e-12 75.1 129 41.1
Aqoxy1G04103 Aquilegia oxysepala HOM05D002883 ORTHO05D003116 8.4e-12 74.7 137 40.1
Aqoxy3G02062 Aquilegia oxysepala HOM05D002883 ORTHO05D003116 8.4e-12 74.7 137 40.1
AUR62017395 Chenopodium quinoa HOM05D002883 ORTHO05D003116 8.4e-12 74.7 138 41.3
SalBow6G0019 Salvia bowleyana HOM05D002883 ORTHO05D003116 8.4e-12 74.7 162 35.8
Duzib205G1708 Durio zibethinus HOM05D002883 ORTHO05D003116 1.4e-11 73.9 129 38.8
Gohir.A11G213100 Gossypium hirsutum HOM05D002883 ORTHO05D003116 1.4e-11 73.9 147 37.4
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.9e-11 73.6 144 40.3
AagrBONN_evm.TU.Sc2ySwM_344.3515 Anthoceros agrestis HOM05D002883 ORTHO05D003116 1.9e-11 73.6 90 45.6
AUR62010506 Chenopodium quinoa HOM05D002883 ORTHO05D003116 1.9e-11 73.6 153 37.3
Lsat_1_v5_gn_6_71681 Lactuca sativa HOM05D002883 ORTHO05D003116 1.9e-11 73.6 129 40.3
Mapoly0048s0102 Marchantia polymorpha HOM05D002883 ORTHO05D003116 1.9e-11 73.6 73 52.1
Medtr3g084750 Medicago truncatula HOM05D002883 ORTHO05D003116 1.9e-11 73.6 132 40.9
QL05p029977 Quercus lobata HOM05D002883 ORTHO05D003116 1.9e-11 73.6 138 38.4
AagrBONN_evm.TU.Sc2ySwM_228.2164 Anthoceros agrestis HOM05D002883 ORTHO05D003116 2.4e-11 73.2 123 43.1
HanXRQChr13g0404781 Helianthus annuus HOM05D002883 ORTHO05D003116 2.4e-11 73.2 129 41.9
QL12p015077 Quercus lobata HOM05D002883 ORTHO05D003116 2.4e-11 73.2 138 38.4
Gohir.D11G210100 Gossypium hirsutum HOM05D002883 ORTHO05D003116 3.2e-11 72.8 149 38.9
SalBow6G6144 Salvia bowleyana HOM05D002883 ORTHO05D003116 3.2e-11 72.8 117 41.0
COL.COLO4_30782 Corchorus olitorius HOM05D003244 ORTHO05D003645 5.4e-11 72.0 136 38.2
ECA233G3943 Erigeron canadensis HOM05D002883 ORTHO05D003116 5.4e-11 72.0 148 37.2
TAR375G0682 Trochodendron aralioides HOM05D002883 ORTHO05D003116 5.4e-11 72.0 132 41.7
Cfa012804 Carpinus fangiana HOM05D002883 ORTHO05D003116 7.1e-11 71.6 124 41.9
CARHR254000 Cardamine hirsuta HOM05D002883 ORTHO05D003116 9.2e-11 71.2 131 37.4
Lalb_Chr08g0230551 Lupinus albus HOM05D002883 ORTHO05D003116 1.2e-10 70.9 129 40.3
Psat3g027320 Pisum sativum HOM05D002883 ORTHO05D003116 1.2e-10 70.9 139 33.8
QL08p053469 Quercus lobata HOM05D002883 ORTHO05D003116 1.2e-10 70.9 123 40.7
CAN.G1511.5 Capsicum annuum HOM05D002883 ORTHO05D003116 1.6e-10 70.5 128 40.6
FAN04G0284 Fragaria x ananassa HOM05D002883 ORTHO05D003116 2.1e-10 70.1 121 37.2
Thecc.03G261300 Theobroma cacao HOM05D002883 ORTHO05D003116 2.1e-10 70.1 96 43.8
BcaC01g04600 Brassica carinata HOM05D002883 ORTHO05D003116 2.7e-10 69.7 101 42.6
arahy.Tifrunner.gnm1.ann1.87TYSS Arachis hypogaea HOM05D002883 ORTHO05D003116 3.5e-10 69.3 136 35.3
AT4G12240 Arabidopsis thaliana HOM05D002883 ORTHO05D003116 4.6e-10 68.9 108 39.8
CiPaw.11G147900 Carya illinoinensis HOM05D002883 ORTHO05D003116 4.6e-10 68.9 127 40.2
RcHm_v2.0_Chr7g0201631 Rosa chinensis HOM05D002883 ORTHO05D003116 4.6e-10 68.9 172 35.5
arahy.Tifrunner.gnm1.ann1.VZ89S9 Arachis hypogaea HOM05D002883 ORTHO05D003116 6.0e-10 68.6 162 33.3
Mapoly0085s0068 Marchantia polymorpha HOM05D002883 ORTHO05D003116 6.0e-10 68.6 71 45.1
ECA240G2929 Erigeron canadensis HOM05D000321 ORTHO05D000204 7.8e-10 68.2 140 38.6
Glyma.11G253400 Glycine max HOM05D002883 ORTHO05D003116 7.8e-10 68.2 138 37.7
FAN13G2596 Fragaria x ananassa HOM05D002883 ORTHO05D003116 1.0e-09 67.8 124 36.3
Pp3c23_7520 Physcomitrium patens HOM05D002883 ORTHO05D003116 1.0e-09 67.8 146 34.2
Sp6g05320 Schrenkiella parvula HOM05D002883 ORTHO05D003116 1.0e-09 67.8 127 36.2
TPR.G18085 Trifolium pratense HOM05D002883 ORTHO05D003116 1.0e-09 67.8 127 38.6
Cc10_g04730 Coffea canephora HOM05D002883 ORTHO05D003116 1.3e-09 67.4 77 48.1
FvH4_5g00630 Fragaria vesca HOM05D002883 ORTHO05D003116 1.3e-09 67.4 125 36.0
FAN08G0098 Fragaria x ananassa HOM05D002883 ORTHO05D003116 1.3e-09 67.4 125 36.0
FAN18G1569 Fragaria x ananassa HOM05D002883 ORTHO05D003116 1.3e-09 67.4 125 36.0
BcaB01g02653 Brassica carinata HOM05D002883 ORTHO05D003116 1.7e-09 67.0 139 38.8
Glyma.18G003600 Glycine max HOM05D002883 ORTHO05D003116 2.3e-09 66.6 125 38.4
DCAR_027077 Daucus carota HOM05D002883 ORTHO05D003116 3.0e-09 66.2 87 40.2
Lj8P572T6 Lonicera japonica HOM05D002883 ORTHO05D003116 3.0e-09 66.2 139 37.4
THA.LOC104806346 Tarenaya hassleriana HOM05D002883 ORTHO05D003116 3.0e-09 66.2 164 32.9
Phvul.001G264600 Phaseolus vulgaris HOM05D002883 ORTHO05D003116 5.1e-09 65.5 150 36.7
arahy.Tifrunner.gnm1.ann1.WE98Q3 Arachis hypogaea HOM05D002883 ORTHO05D003116 6.6e-09 65.1 78 42.3
AL6G47100 Arabidopsis lyrata HOM05D002883 ORTHO05D003116 8.6e-09 64.7 167 33.5
Prupe.5G079100 Prunus persica HOM05D002883 ORTHO05D003116 8.6e-09 64.7 138 36.2
Carub.0006s3137 Capsella rubella HOM05D002883 ORTHO05D003116 1.1e-08 64.3 134 37.3
Mapoly0049s0076 Marchantia polymorpha HOM05D002883 ORTHO05D003116 1.5e-08 63.9 103 42.7
C03p35890 Brassica napus HOM05D002883 ORTHO05D003116 1.9e-08 63.5 150 35.3
BolC3t15897H Brassica oleracea HOM05D002883 ORTHO05D003116 1.9e-08 63.5 150 35.3
unitig_746.g26609 Utricularia gibba HOM05D002883 ORTHO05D003116 1.9e-08 63.5 119 41.2
Thhalv10028747m.g Eutrema salsugineum HOM05D002883 ORTHO05D003116 2.5e-08 63.2 150 34.7
Medtr1g015930 Medicago truncatula HOM05D002883 ORTHO05D003116 3.3e-08 62.8 126 41.3
SEGI_20592 Sequoiadendron giganteum HOM05D002883 ORTHO05D003116 4.3e-08 62.4 74 45.9
PSO339G2077 Papaver somniferum HOM05D002883 ORTHO05D003116 5.6e-08 62.0 130 36.9
CBR_g49431 Chara braunii HOM05D002883 ORTHO05D003116 7.3e-08 61.6 119 36.1
arahy.Tifrunner.gnm1.ann1.AI6U0B Arachis hypogaea HOM05D002883 ORTHO05D003116 1.2e-07 60.8 111 42.3
Ciclev10029853m.g Citrus clementina HOM05D002883 ORTHO05D003116 1.6e-07 60.5 130 36.9
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.1e-07 60.1 130 36.2
arahy.Tifrunner.gnm1.ann1.NVJ6TJ Arachis hypogaea HOM05D002883 ORTHO05D003116 2.1e-07 60.1 155 35.5
CANSAT56G1697 Cannabis sativa HOM05D002883 ORTHO05D003116 2.1e-07 60.1 128 40.6
MD09G1283800 Malus domestica HOM05D002883 ORTHO05D003116 2.1e-07 60.1 119 34.5
Pp3c2_19390 Physcomitrium patens HOM05D002883 ORTHO05D003116 2.1e-07 60.1 103 39.8
Psat6g021240 Pisum sativum HOM05D002883 ORTHO05D003116 2.1e-07 60.1 127 38.6
SHI10380 Sapria himalayana HOM05D002883 ORTHO05D003116 2.1e-07 60.1 101 40.6
SMO164G0064 Selaginella moellendorffii HOM05D002883 ORTHO05D003116 2.1e-07 60.1 56 55.4
A03p29620 Brassica napus HOM05D002883 ORTHO05D003116 2.8e-07 59.7 147 36.7
BraA03t12156Z Brassica rapa HOM05D002883 ORTHO05D003116 2.8e-07 59.7 147 36.7
Rhsim06G0053200 Rhododendron simsii HOM05D002883 ORTHO05D003116 2.8e-07 59.7 82 42.7
arahy.Tifrunner.gnm1.ann1.CW63DQ Arachis hypogaea HOM05D002883 ORTHO05D003116 4.7e-07 58.9 127 33.1
arahy.Tifrunner.gnm1.ann1.0A7D8K Arachis hypogaea HOM05D002883 ORTHO05D003116 6.2e-07 58.5 124 38.7
arahy.Tifrunner.gnm1.ann1.TFH4LI Arachis hypogaea HOM05D002883 ORTHO05D003116 6.2e-07 58.5 124 38.7
SalBow7G1742 Salvia bowleyana HOM05D002883 ORTHO05D003116 1.1e-06 57.8 102 35.3
Ca_13157_v3 Cicer arietinum L. HOM05D002883 ORTHO05D003116 1.8e-06 57.0 71 47.9
SGA_v2.0_scaffold324G48664 Striga asiatica HOM05D002883 ORTHO05D003116 1.8e-06 57.0 102 35.3
EL10Ac8g20443 Beta vulgaris HOM05D002883 ORTHO05D003116 2.4e-06 56.6 130 35.4
Cfa018060 Carpinus fangiana HOM05D002883 ORTHO05D003116 2.4e-06 56.6 126 37.3
MBI04_g26966_MAGBIO Magnolia biondii HOM05D002883 ORTHO05D003116 2.4e-06 56.6 120 38.3
Pp3c10_1440 Physcomitrium patens HOM05D002883 ORTHO05D003116 2.4e-06 56.6 113 37.2
Actinidia01090 Actinidia chinensis HOM05D002883 ORTHO05D003116 3.1e-06 56.2 104 39.4
CiPaw.16G039800 Carya illinoinensis HOM05D002883 ORTHO05D003116 3.1e-06 56.2 159 31.4
Haze_18049 Corylus avellana HOM05D002883 ORTHO05D003116 3.1e-06 56.2 126 37.3
Nn1g04774 Nelumbo nucifera HOM05D002883 ORTHO05D003116 4.0e-06 55.8 116 36.2
Oeu009776.1 Olea europaea HOM05D002883 ORTHO05D003116 4.0e-06 55.8 121 37.2
Dinv39283 Davidia involucrata HOM05D002883 ORTHO05D003116 5.2e-06 55.5 167 32.9
ECA232G3166 Erigeron canadensis HOM05D002883 ORTHO05D003116 5.2e-06 55.5 126 34.1
Lj5g0009773 Lotus japonicus HOM05D002883 ORTHO05D003116 5.2e-06 55.5 85 43.5
MD15G1078800 Malus domestica HOM05D002883 ORTHO05D003116 5.2e-06 55.5 120 37.5
Manes.05G176100 Manihot esculenta HOM05D002883 ORTHO05D003116 5.2e-06 55.5 102 40.2
TAR625G1424 Trochodendron aralioides HOM05D002883 ORTHO05D003116 5.2e-06 55.5 126 37.3
ATR0724G074 Amborella trichopoda HOM05D002883 ORTHO05D003116 6.8e-06 55.1 160 33.1
CsaV3_4G034630 Cucumis sativus L. HOM05D002883 ORTHO05D003116 6.8e-06 55.1 104 39.4


User provided reference genes

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