Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 2.3e-159 565.5 281 100.0
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 7.9e-115 417.5 275 74.5
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 2.5e-113 412.5 250 79.2
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.1e-111 407.1 247 78.9
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.8e-111 406.4 272 72.8
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.2e-110 403.7 273 73.3
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 2.0e-110 402.9 271 74.2
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 2.0e-110 402.9 269 74.0
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 2.0e-110 402.9 269 74.0
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 5.9e-110 401.4 264 75.0
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 5.9e-110 401.4 264 75.0
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 7.6e-110 401.0 248 77.8
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 1.0e-109 400.6 257 76.3
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.0e-109 400.6 243 79.0
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 1.0e-109 400.6 276 70.3
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 1.0e-109 400.6 256 77.7
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 1.3e-109 400.2 254 75.2
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.7e-109 399.8 253 75.5
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 2.2e-109 399.4 247 78.5
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 3.8e-109 398.7 275 73.1
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 3.8e-109 398.7 274 72.6
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.8e-109 398.7 274 72.6
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.8e-109 398.7 274 72.6
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 5.0e-109 398.3 274 72.6
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 5.0e-109 398.3 257 74.7
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 6.5e-109 397.9 271 72.7
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 6.5e-109 397.9 274 72.3
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 8.5e-109 397.5 280 71.1
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 8.5e-109 397.5 254 74.4
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 8.5e-109 397.5 237 79.7
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 8.5e-109 397.5 256 74.6
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 8.5e-109 397.5 282 70.2
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 8.5e-109 397.5 278 69.4
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 1.1e-108 397.1 247 77.3
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.4e-108 396.7 242 77.3
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.4e-108 396.7 241 77.6
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.5e-108 396.0 274 71.9
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 3.2e-108 395.6 262 73.7
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 3.2e-108 395.6 263 74.9
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 4.2e-108 395.2 261 73.9
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 4.2e-108 395.2 261 74.3
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.2e-108 395.2 275 71.6
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 7.2e-108 394.4 250 76.0
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 9.3e-108 394.0 269 72.9
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.2e-107 393.7 264 72.0
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 2.1e-107 392.9 241 75.9
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 2.7e-107 392.5 237 78.5
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 3.6e-107 392.1 271 72.3
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 6.1e-107 391.3 244 75.8
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 6.1e-107 391.3 277 70.8
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 1.0e-106 390.6 258 75.2
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.3e-106 390.2 277 70.0
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 1.8e-106 389.8 256 72.7
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 3.0e-106 389.0 273 70.7
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 3.0e-106 389.0 263 73.4
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 3.0e-106 389.0 272 72.8
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 3.9e-106 388.7 274 70.8
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 3.9e-106 388.7 244 75.0
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 5.1e-106 388.3 274 70.8
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 5.1e-106 388.3 237 76.4
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 5.1e-106 388.3 277 70.8
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 6.7e-106 387.9 274 70.8
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 6.7e-106 387.9 274 70.8
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 8.7e-106 387.5 236 76.7
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 1.1e-105 387.1 268 71.3
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.1e-105 387.1 237 77.6
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.5e-105 386.7 239 77.0
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 1.5e-105 386.7 283 70.0
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.9e-105 386.3 244 74.6
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 1.9e-105 386.3 237 77.2
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.5e-105 386.0 268 72.0
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 2.5e-105 386.0 268 72.0
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 4.3e-105 385.2 258 72.9
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 7.4e-105 384.4 256 73.0
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 7.4e-105 384.4 275 70.2
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.3e-104 383.6 283 68.2
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 1.3e-104 383.6 277 69.3
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 1.3e-104 383.6 276 68.5
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 2.2e-104 382.9 242 75.2
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 3.7e-104 382.1 285 66.3
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 4.8e-104 381.7 253 72.3
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 4.8e-104 381.7 261 70.1
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 4.1e-103 378.6 260 71.9
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 6.9e-103 377.9 276 67.4
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 9.1e-103 377.5 257 72.4
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.2e-102 377.1 237 73.4
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 1.5e-102 376.7 240 73.3
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 2.0e-102 376.3 266 69.5
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 2.0e-102 376.3 260 71.2
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.6e-102 375.9 284 66.2
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 3.4e-102 375.6 248 73.8
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 3.4e-102 375.6 241 74.7
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 4.5e-102 375.2 258 70.2
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 5.9e-102 374.8 265 67.9
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 7.7e-102 374.4 279 66.7
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.3e-101 373.6 274 69.3
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 2.2e-101 372.9 237 74.7
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.7e-99 365.9 225 76.0
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 3.6e-99 365.5 221 78.3
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 3.0e-98 362.5 247 70.4
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 3.3e-97 359.0 242 68.2
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 3.1e-95 352.4 225 73.8
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 2.6e-94 349.4 281 65.1
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 4.5e-94 348.6 237 70.0
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 5.9e-94 348.2 257 69.6
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.0e-93 347.4 266 65.4
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 1.0e-93 347.4 370 51.4
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 3.2e-92 342.4 240 68.8
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 5.5e-92 341.7 272 62.1
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.9e-90 335.5 245 66.5
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 6.7e-90 334.7 267 63.7
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 1.1e-89 334.0 269 64.3
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 5.7e-89 331.6 223 70.9
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.4e-87 327.0 268 61.2
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.6e-83 313.5 238 64.3
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 2.1e-83 313.2 273 57.1
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 2.4e-79 299.7 191 73.8
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 3.5e-78 295.8 208 71.6
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.0e-73 280.0 174 76.4
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 1.7e-72 276.9 256 55.1
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 4.5e-70 268.9 217 62.2
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 7.7e-70 268.1 241 56.8
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 1.9e-68 263.5 223 59.2
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.4e-63 247.3 236 53.0
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.0e-61 241.1 221 55.2
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-60 237.3 256 50.4
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 9.5e-60 234.6 172 64.5
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.2e-57 227.6 162 69.1
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 1.6e-54 217.2 139 77.0
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 5.2e-50 202.2 234 47.0
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 1.2e-49 201.1 120 80.8
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 8.3e-48 194.9 126 75.4
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 1.9e-47 193.7 228 41.7
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 2.7e-46 189.9 215 46.5
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 2.5e-44 183.3 105 80.0
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.6e-41 173.3 222 42.3
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.8e-35 153.3 116 67.2
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 5.8e-33 145.6 87 77.0
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 4.9e-32 142.5 87 77.0
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 3.1e-26 123.2 117 54.7
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 6.9e-26 122.1 251 31.5
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 7.6e-25 118.6 72 70.8
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 2.7e-22 110.2 73 67.1
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 1.3e-21 107.8 84 64.3
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.3e-21 107.8 68 70.6
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 5.8e-17 92.4 86 55.8
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.3e-12 76.6 47 74.5
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.3e-11 74.7 184 34.8
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 8.1e-11 72.0 225 28.0
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 2.4e-10 70.5 177 31.1
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.6e-09 67.0 247 27.9
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 3.4e-09 66.6 250 26.8
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 3.4e-09 66.6 224 30.8
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 4.5e-09 66.2 256 30.9
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 5.8e-09 65.9 247 25.9
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 5.8e-09 65.9 246 26.8
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 5.8e-09 65.9 246 26.8
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 7.6e-09 65.5 253 27.7
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 7.6e-09 65.5 222 28.8
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 7.6e-09 65.5 239 27.6
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 2.9e-08 63.5 239 26.4
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 3.8e-08 63.2 225 28.0
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 3.8e-08 63.2 246 26.0
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 6.4e-08 62.4 225 28.0
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 1.9e-07 60.8 239 26.8
Ah.05g178580 Amaranthus hybridus HOM05D003774 ORTHO05D009174 2.4e-07 60.5 197 29.4
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 3.2e-07 60.1 239 28.5
Manes.02G198600 Manihot esculenta HOM05D003774 ORTHO05D009174 3.2e-07 60.1 228 28.1
RcHm_v2.0_Chr7g0227151 Rosa chinensis HOM05D003774 ORTHO05D009174 3.2e-07 60.1 225 28.9
CiPaw.07G235700 Carya illinoinensis HOM05D003774 ORTHO05D009174 5.5e-07 59.3 198 31.3
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 7.1e-07 58.9 36 72.2
Mapoly0091s0038 Marchantia polymorpha HOM05D001214 ORTHO05D001029 1.2e-06 58.2 212 28.8
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 1.6e-06 57.8 71 45.1
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 3.5e-06 56.6 198 29.3
QL02p014374 Quercus lobata HOM05D003774 ORTHO05D009174 4.6e-06 56.2 197 31.0
AagrBONN_evm.TU.Sc2ySwM_117.58 Anthoceros agrestis HOM05D004677 ORTHO05D074401 6.0e-06 55.8 105 37.1
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 6.0e-06 55.8 69 46.4
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 6.0e-06 55.8 219 27.9


User provided reference genes

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