Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04969 Sequoiadendron giganteum HOM05D000002 ORTHO05D000047 2.7e-91 338.6 162 100.0
SEGI_17012 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 7.4e-33 144.4 72 94.4
SEGI_10748 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.2e-32 142.9 72 94.4
SEGI_03840 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.8e-32 142.5 72 93.1
SEGI_27629 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.8e-32 142.5 106 70.8
SEGI_33603 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.7e-29 133.3 72 84.7
SEGI_28989 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.2e-28 128.6 70 84.3
Hma1.2p1_0785F.1_g217520 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.0e-22 109.8 74 64.9
Ciclev10013723m.g Citrus clementina HOM05D000002 ORTHO05D000047 1.9e-20 103.2 72 65.3
SEGI_22384 Sequoiadendron giganteum HOM05D000018 ORTHO05D001333 1.6e-19 100.1 54 79.6
SEGI_41209 Sequoiadendron giganteum HOM05D001800 ORTHO05D000047 3.6e-19 99.0 49 91.8
SEGI_36887 Sequoiadendron giganteum HOM05D000018 ORTHO05D001333 1.4e-18 97.1 54 75.9
SEGI_01674 Sequoiadendron giganteum HOM05D000018 ORTHO05D001333 5.2e-18 95.1 54 72.2
PSO675G4970 Papaver somniferum HOM05D000002 ORTHO05D000047 1.2e-14 84.0 71 53.5
FvH4_2g17331 Fragaria vesca HOM05D000002 ORTHO05D000047 2.0e-14 83.2 72 52.8
RcHm_v2.0_Chr4g0388371 Rosa chinensis HOM05D000002 ORTHO05D000047 2.7e-14 82.8 70 52.9
RcHm_v2.0_Chr3g0453341 Rosa chinensis HOM05D000002 ORTHO05D000047 1.0e-13 80.9 71 50.7
RcHm_v2.0_Chr1g0322851 Rosa chinensis HOM05D000002 ORTHO05D000047 2.9e-13 79.3 66 54.5
RcHm_v2.0_Chr7g0192331 Rosa chinensis HOM05D000002 ORTHO05D000047 2.9e-13 79.3 66 54.5
MD10G1237700 Malus domestica HOM05D000002 ORTHO05D000047 5.0e-13 78.6 76 50.0
PSO063G5806 Papaver somniferum HOM05D000002 ORTHO05D000001 5.0e-13 78.6 71 50.7
Prupe.7G119900 Prunus persica HOM05D000002 ORTHO05D000047 5.0e-13 78.6 72 47.2
RcHm_v2.0_Chr4g0394021 Rosa chinensis HOM05D000002 ORTHO05D000047 5.0e-13 78.6 71 50.7
RcHm_v2.0_Chr2g0156071 Rosa chinensis HOM05D000002 ORTHO05D000001 8.5e-13 77.8 68 51.5
MD10G1333400 Malus domestica HOM05D000002 ORTHO05D000047 4.2e-12 75.5 68 51.5
MD15G1053300 Malus domestica HOM05D000002 ORTHO05D000047 4.2e-12 75.5 68 51.5
PSO732G0713 Papaver somniferum HOM05D000002 ORTHO05D000047 4.2e-12 75.5 71 47.9
MD08G1209000 Malus domestica HOM05D000103 ORTHO05D000049 7.2e-12 74.7 68 50.0
TWI79G1645 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 2.1e-11 73.2 69 47.8
MD11G1107300 Malus domestica HOM05D000002 ORTHO05D000001 4.7e-11 72.0 71 49.3
MD14G1033400 Malus domestica HOM05D000002 ORTHO05D000047 4.7e-11 72.0 71 45.1
Manes.18G122701 Manihot esculenta HOM05D000002 ORTHO05D000047 6.1e-11 71.6 65 52.3
MD01G1096500 Malus domestica HOM05D000002 ORTHO05D000001 8.0e-11 71.2 71 49.3
Manes.16G040701 Manihot esculenta HOM05D000002 ORTHO05D000047 8.0e-11 71.2 133 36.1
Dinv15594 Davidia involucrata HOM05D000061 ORTHO05D000050 1.0e-10 70.9 51 66.7
RcHm_v2.0_Chr6g0261731 Rosa chinensis HOM05D000002 ORTHO05D000047 1.4e-10 70.5 70 51.4
FvH4_3g36541 Fragaria vesca HOM05D000002 ORTHO05D000047 1.8e-10 70.1 77 42.9
Manes.02G195350 Manihot esculenta HOM05D000002 ORTHO05D000047 2.3e-10 69.7 65 49.2
TWI63G0245 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 3.0e-10 69.3 69 44.9
TWI74G0113 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 3.0e-10 69.3 69 44.9
RcHm_v2.0_Chr1g0365941 Rosa chinensis HOM05D000002 ORTHO05D000047 8.8e-10 67.8 77 44.2
TWI36G0078 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 1.5e-09 67.0 70 47.1
MBI02_g25179_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D001333 9.8e-09 64.3 54 51.9
Manes.10G062350 Manihot esculenta HOM05D000002 ORTHO05D000047 9.8e-09 64.3 122 35.2
TWI38G0937 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 9.8e-09 64.3 69 43.5
Manes.15G179768 Manihot esculenta HOM05D000002 ORTHO05D000047 1.3e-08 63.9 137 32.1
Peaxi162Scf00007g02210 Petunia axillaris HOM05D000018 ORTHO05D001333 1.7e-08 63.5 54 55.6
Dinv15509 Davidia involucrata HOM05D000018 ORTHO05D001333 2.2e-08 63.2 54 51.9
Manes.05G119167 Manihot esculenta HOM05D000002 ORTHO05D000047 2.2e-08 63.2 66 43.9
AUR62014673 Chenopodium quinoa HOM05D000002 ORTHO05D000047 3.7e-08 62.4 127 28.3
CSS0015611 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 4.9e-08 62.0 66 39.4
Manes.07G072514 Manihot esculenta HOM05D000002 ORTHO05D000047 4.9e-08 62.0 122 35.2
PSO675G4477 Papaver somniferum HOM05D000018 ORTHO05D001333 4.9e-08 62.0 54 53.7
AUR62016469 Chenopodium quinoa HOM05D000002 ORTHO05D000047 8.3e-08 61.2 125 29.6
SEGI_26551 Sequoiadendron giganteum HOM05D000018 ORTHO05D050900 1.1e-07 60.8 30 83.3
TAR629G2930 Trochodendron aralioides HOM05D000018 ORTHO05D001333 1.1e-07 60.8 54 51.9
AUR62009657 Chenopodium quinoa HOM05D000002 ORTHO05D000047 1.4e-07 60.5 138 29.7
AUR62016421 Chenopodium quinoa HOM05D000002 ORTHO05D000047 1.4e-07 60.5 76 36.8
Manes.18G145666 Manihot esculenta HOM05D000002 ORTHO05D000047 1.4e-07 60.5 66 40.9
Sopen08g015340 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-07 60.5 66 45.5
AUR62024388 Chenopodium quinoa HOM05D000002 ORTHO05D000047 1.8e-07 60.1 89 33.7
Dinv02739 Davidia involucrata HOM05D000018 ORTHO05D001333 1.8e-07 60.1 53 52.8
Eucgr.K01677 Eucalyptus grandis HOM05D000886 ORTHO05D000525 1.8e-07 60.1 62 41.9
Glyma.09G243500 Glycine max HOM05D000018 ORTHO05D003405 1.8e-07 60.1 54 46.3
vmacro06843 Vaccinium macrocarpon HOM05D000018 ORTHO05D003405 1.8e-07 60.1 65 46.2
Cpa.g.sc42.19 Carica papaya HOM05D000018 ORTHO05D001333 2.4e-07 59.7 49 46.9
AUR62032808 Chenopodium quinoa HOM05D000002 ORTHO05D000047 3.1e-07 59.3 79 36.7
AUR62043221 Chenopodium quinoa HOM05D000002 ORTHO05D000047 3.1e-07 59.3 81 37.0
Nn8g40014 Nelumbo nucifera HOM05D000002 ORTHO05D000047 3.1e-07 59.3 76 38.2
PSO013G0298 Papaver somniferum HOM05D000002 ORTHO05D000001 3.1e-07 59.3 51 47.1
CANSAT01G2034 Cannabis sativa HOM05D000002 ORTHO05D000047 4.1e-07 58.9 68 47.1
Manes.14G103250 Manihot esculenta HOM05D000002 ORTHO05D000001 4.1e-07 58.9 76 39.5
AUR62003492 Chenopodium quinoa HOM05D000002 ORTHO05D000047 5.4e-07 58.5 78 33.3
AUR62004868 Chenopodium quinoa HOM05D000002 ORTHO05D000047 5.4e-07 58.5 64 39.1
AUR62022084 Chenopodium quinoa HOM05D000002 ORTHO05D000047 5.4e-07 58.5 81 35.8
Gohir.D13G052700 Gossypium hirsutum HOM05D000018 ORTHO05D001333 5.4e-07 58.5 47 44.7
Nitab4.5_0001465g0050 Nicotiana tabacum HOM05D000018 ORTHO05D001333 5.4e-07 58.5 54 51.9
Nitab4.5_0003814g0010 Nicotiana tabacum HOM05D000018 ORTHO05D001333 5.4e-07 58.5 54 51.9
SEGI_14507 Sequoiadendron giganteum HOM05D000018 ORTHO05D003405 5.4e-07 58.5 53 45.3
VMungo1383G0840 Vigna mungo HOM05D000018 ORTHO05D003405 5.4e-07 58.5 58 44.8
Actinidia08017 Actinidia chinensis HOM05D000018 ORTHO05D001333 7.0e-07 58.2 54 51.9
Actinidia30493 Actinidia chinensis HOM05D000018 ORTHO05D001333 7.0e-07 58.2 54 51.9
AUR62022085 Chenopodium quinoa HOM05D000002 ORTHO05D000047 7.0e-07 58.2 81 35.8
Oeu046212.2 Olea europaea HOM05D000018 ORTHO05D001333 7.0e-07 58.2 54 50.0
Prupe.3G076700 Prunus persica HOM05D000002 ORTHO05D000047 7.0e-07 58.2 61 41.0
Prupe.6G327500 Prunus persica HOM05D000002 ORTHO05D000047 7.0e-07 58.2 61 41.0
QL04p083856 Quercus lobata HOM05D000002 ORTHO05D000001 7.0e-07 58.2 74 41.9
Migut.C00077 Erythranthe guttata HOM05D000002 ORTHO05D000047 9.2e-07 57.8 67 37.3
Migut.M00360 Erythranthe guttata HOM05D000018 ORTHO05D001333 9.2e-07 57.8 52 53.8
Gohir.A13G069300 Gossypium hirsutum HOM05D000018 ORTHO05D001333 9.2e-07 57.8 45 48.9
Gorai.013G059000 Gossypium raimondii HOM05D000018 ORTHO05D001333 9.2e-07 57.8 45 48.9
Nn5g28240 Nelumbo nucifera HOM05D000002 ORTHO05D000047 9.2e-07 57.8 66 42.4
Phvul.008G047500 Phaseolus vulgaris HOM05D000018 ORTHO05D003405 9.2e-07 57.8 54 44.4
Psat5g071680 Pisum sativum HOM05D000002 ORTHO05D000047 9.2e-07 57.8 62 35.5
Rhsim01G0079100 Rhododendron simsii HOM05D000002 ORTHO05D000047 9.2e-07 57.8 65 40.0
arahy.Tifrunner.gnm1.ann1.VETR4L Arachis hypogaea HOM05D000018 ORTHO05D003405 1.2e-06 57.4 48 47.9
Cpa.g.c38650 Carica papaya HOM05D000002 ORTHO05D000047 1.2e-06 57.4 61 44.3
Cpa.g.c40739.2 Carica papaya HOM05D000002 ORTHO05D000047 1.2e-06 57.4 61 44.3
AUR62009141 Chenopodium quinoa HOM05D000002 ORTHO05D000047 1.2e-06 57.4 79 32.9
ECA234G0368 Erigeron canadensis HOM05D000018 ORTHO05D003405 1.2e-06 57.4 58 43.1
Gohir.A13G069400 Gossypium hirsutum HOM05D000018 ORTHO05D001333 1.2e-06 57.4 47 44.7
Peaxi162Scf00245g00053 Petunia axillaris HOM05D000018 ORTHO05D001333 1.2e-06 57.4 51 51.0
Sopen03g004130 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-06 57.4 66 45.5
Sopen08g020610 Solanum pennellii HOM05D000002 ORTHO05D000047 1.2e-06 57.4 66 37.9
arahy.Tifrunner.gnm1.ann1.4K97M7 Arachis hypogaea HOM05D000018 ORTHO05D003405 1.6e-06 57.0 48 47.9
AUR62023412 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.6e-06 57.0 99 35.4
Eucgr.A02928 Eucalyptus grandis HOM05D000018 ORTHO05D003405 1.6e-06 57.0 50 48.0
Glyma.08G070000 Glycine max HOM05D000018 ORTHO05D001333 1.6e-06 57.0 49 44.9
Gohir.A13G051600 Gossypium hirsutum HOM05D000018 ORTHO05D001333 1.6e-06 57.0 45 44.4
SEGI_09443 Sequoiadendron giganteum HOM05D000018 ORTHO05D004554 1.6e-06 57.0 52 48.1
Ciclev10006653m.g Citrus clementina HOM05D000002 ORTHO05D000047 2.0e-06 56.6 108 38.0
Ciclev10010244m.g Citrus clementina HOM05D000002 ORTHO05D000047 2.0e-06 56.6 35 71.4
ECA246G0554 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-06 56.6 66 37.9
Rhsim03G0160000 Rhododendron simsii HOM05D000018 ORTHO05D003405 2.0e-06 56.6 53 47.2
AUR62009467 Chenopodium quinoa HOM05D000002 ORTHO05D000047 2.7e-06 56.2 81 35.8
AUR62022279 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.7e-06 56.2 76 35.5
ECA234G1315 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.7e-06 56.2 65 40.0
MBI04_g28362_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D003405 2.7e-06 56.2 54 44.4
MBI14_g34239_MAGBIO Magnolia biondii HOM05D033994 ORTHO05D000047 2.7e-06 56.2 66 37.9
Prupe.1G241200 Prunus persica HOM05D000002 ORTHO05D000047 2.7e-06 56.2 61 39.3
Prupe.6G115900 Prunus persica HOM05D000002 ORTHO05D000047 2.7e-06 56.2 61 39.3
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 2.7e-06 56.2 66 40.9
Sopen08g020560 Solanum pennellii HOM05D000002 ORTHO05D000047 2.7e-06 56.2 66 43.9
Sopen11g005430 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-06 56.2 66 43.9
CAN.G898.1 Capsicum annuum HOM05D000018 ORTHO05D001333 3.5e-06 55.8 54 50.0
Gohir.D13G052800 Gossypium hirsutum HOM05D000018 ORTHO05D001333 3.5e-06 55.8 45 46.7
Gohir.D13G052900 Gossypium hirsutum HOM05D000018 ORTHO05D001333 3.5e-06 55.8 44 47.7
Lsat_1_v5_gn_4_39320 Lactuca sativa HOM05D000018 ORTHO05D003405 3.5e-06 55.8 58 39.7
Lj1g0000492 Lotus japonicus HOM05D000018 ORTHO05D003405 3.5e-06 55.8 58 39.7
Lj4g0013600 Lotus japonicus HOM05D000018 ORTHO05D001333 3.5e-06 55.8 47 46.8
Medtr7g081710 Medicago truncatula HOM05D000018 ORTHO05D003405 3.5e-06 55.8 54 42.6
PSO063G5787 Papaver somniferum HOM05D000002 ORTHO05D000047 3.5e-06 55.8 68 39.7
Psat0s3550g0080 Pisum sativum HOM05D000002 ORTHO05D000047 3.5e-06 55.8 69 33.3
QL05p014573 Quercus lobata HOM05D000002 ORTHO05D000001 3.5e-06 55.8 77 41.6
QL11p016085 Quercus lobata HOM05D000002 ORTHO05D000001 3.5e-06 55.8 77 41.6
Sabra06G0157700 Salix brachista HOM05D000002 ORTHO05D000047 3.5e-06 55.8 58 41.4
Sopen03g032090 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-06 55.8 66 42.4
Sopen07g024780 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-06 55.8 66 43.9
SGA_v2.0_scaffold70G23442 Striga asiatica HOM05D000018 ORTHO05D001333 3.5e-06 55.8 54 51.9
arahy.Tifrunner.gnm1.ann1.E4YT9U Arachis hypogaea HOM05D000018 ORTHO05D001333 4.5e-06 55.5 47 40.4
EL10Ac6g15181 Beta vulgaris HOM05D000018 ORTHO05D003405 4.5e-06 55.5 54 44.4
C04p05780 Brassica napus HOM05D000018 ORTHO05D003405 4.5e-06 55.5 49 44.9
C04p71250 Brassica napus HOM05D000018 ORTHO05D003405 4.5e-06 55.5 48 47.9
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.5e-06 55.5 64 32.8
Cfa005691 Carpinus fangiana HOM05D000018 ORTHO05D001333 4.5e-06 55.5 49 42.9
ECA236G3253 Erigeron canadensis HOM05D000018 ORTHO05D003405 4.5e-06 55.5 54 42.6
Lsat_1_v5_gn_7_12140 Lactuca sativa HOM05D000018 ORTHO05D003405 4.5e-06 55.5 58 41.4
Manes.04G028650 Manihot esculenta HOM05D000002 ORTHO05D000047 4.5e-06 55.5 61 44.3
PSO339G4703 Papaver somniferum HOM05D000002 ORTHO05D000001 4.5e-06 55.5 48 52.1
Sopen06g021180 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-06 55.5 66 43.9
arahy.Tifrunner.gnm1.ann1.8R6QZM Arachis hypogaea HOM05D000018 ORTHO05D003405 5.9e-06 55.1 54 44.4
Cpa.g.sc14.56 Carica papaya HOM05D000002 ORTHO05D000047 5.9e-06 55.1 65 41.5
AUR62021488 Chenopodium quinoa HOM05D000002 ORTHO05D000047 5.9e-06 55.1 79 31.6
Gorai.013G055900 Gossypium raimondii HOM05D000018 ORTHO05D001333 5.9e-06 55.1 44 43.2
Hma1.2p1_1756F.1_g301060 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 5.9e-06 55.1 66 45.5
Prupe.4G181800 Prunus persica HOM05D000002 ORTHO05D000047 5.9e-06 55.1 61 39.3
Rhsim03G0157400 Rhododendron simsii HOM05D000002 ORTHO05D000047 5.9e-06 55.1 73 46.6
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 5.9e-06 55.1 147 28.6
Sopen02g020640 Solanum pennellii HOM05D000002 ORTHO05D000001 5.9e-06 55.1 76 38.2
Sopen04g014630 Solanum pennellii HOM05D000002 ORTHO05D000001 5.9e-06 55.1 76 38.2
TPR.G28804 Trifolium pratense HOM05D000018 ORTHO05D003405 5.9e-06 55.1 48 45.8
arahy.Tifrunner.gnm1.ann1.UBZ7E4 Arachis hypogaea HOM05D000018 ORTHO05D003405 7.7e-06 54.7 54 44.4
CSS0030944 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.7e-06 54.7 66 36.4
Cpa.g.sc84.125 Carica papaya HOM05D000002 ORTHO05D000047 7.7e-06 54.7 66 43.9
Cfa005688 Carpinus fangiana HOM05D000018 ORTHO05D001333 7.7e-06 54.7 49 40.8
AUR62016744 Chenopodium quinoa HOM05D000002 ORTHO05D000047 7.7e-06 54.7 81 33.3
AUR62019880 Chenopodium quinoa HOM05D000143 ORTHO05D000072 7.7e-06 54.7 80 33.8
ECA240G3364 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.7e-06 54.7 61 37.7
Gorai.013G059500 Gossypium raimondii HOM05D000018 ORTHO05D001333 7.7e-06 54.7 44 45.5
Lsat_1_v5_gn_5_136520 Lactuca sativa HOM05D000018 ORTHO05D003405 7.7e-06 54.7 54 40.7
PSO675G6758 Papaver somniferum HOM05D000002 ORTHO05D000047 7.7e-06 54.7 66 50.0
SHI01914 Sapria himalayana HOM05D000002 ORTHO05D000047 7.7e-06 54.7 66 37.9
Sed0011340 Sechium edule HOM05D000018 ORTHO05D001333 7.7e-06 54.7 49 40.8
Sopen02g013440 Solanum pennellii HOM05D000002 ORTHO05D000001 7.7e-06 54.7 83 37.3
Sopen07g004340 Solanum pennellii HOM05D000002 ORTHO05D000001 7.7e-06 54.7 83 37.3
Sopen09g027520 Solanum pennellii HOM05D000002 ORTHO05D000001 7.7e-06 54.7 66 37.9


User provided reference genes

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