Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 8.9e-290 999.6 515 100.0
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 4.3e-10 70.5 106 48.1
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 3.7e-09 67.4 84 45.2
SEGI_23861 Sequoiadendron giganteum HOM05D004016 ORTHO05D385574 3.7e-09 67.4 189 32.3
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 4.8e-09 67.0 141 31.9
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 4.8e-09 67.0 106 38.7
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 6.3e-09 66.6 144 35.4
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 6.3e-09 66.6 154 35.1
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 6.3e-09 66.6 96 43.8
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 8.2e-09 66.2 80 45.0
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 8.2e-09 66.2 103 41.7
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 8.2e-09 66.2 84 46.4
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 8.2e-09 66.2 145 34.5
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.2e-09 66.2 129 36.4
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 8.2e-09 66.2 129 36.4
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 8.2e-09 66.2 165 31.5
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 8.2e-09 66.2 88 44.3
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-08 65.9 87 44.8
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.4e-08 65.5 93 43.0
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.8e-08 65.1 80 45.0
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 1.8e-08 65.1 127 32.3
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.4e-08 64.7 91 45.1
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 2.4e-08 64.7 133 39.8
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.4e-08 64.7 85 44.7
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.1e-08 64.3 129 35.7
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.1e-08 64.3 87 44.8
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.1e-08 64.3 87 44.8
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 3.1e-08 64.3 135 31.1
ATR0712G013 Amborella trichopoda HOM05D007731 ORTHO05D008483 4.1e-08 63.9 223 28.7
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 4.1e-08 63.9 86 45.3
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 5.3e-08 63.5 80 45.0
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 5.3e-08 63.5 92 42.4
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.3e-08 63.5 87 47.1
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 5.3e-08 63.5 152 33.6
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 6.9e-08 63.2 159 35.2
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 6.9e-08 63.2 90 41.1
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 9.0e-08 62.8 87 44.8
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 9.0e-08 62.8 89 43.8
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 9.0e-08 62.8 80 43.8
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 9.0e-08 62.8 85 43.5
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 9.0e-08 62.8 151 33.8
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 1.2e-07 62.4 161 31.1
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 1.2e-07 62.4 97 41.2
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 1.2e-07 62.4 130 35.4
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.2e-07 62.4 176 33.0
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 1.5e-07 62.0 144 33.3
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 1.5e-07 62.0 121 35.5
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 1.5e-07 62.0 154 32.5
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.5e-07 62.0 110 38.2
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 1.5e-07 62.0 172 29.7
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 1.5e-07 62.0 86 41.9
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 2.0e-07 61.6 82 45.1
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 2.0e-07 61.6 82 45.1
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 2.0e-07 61.6 82 45.1
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.0e-07 61.6 99 43.4
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 2.0e-07 61.6 159 32.7
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.0e-07 61.6 86 46.5
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.0e-07 61.6 87 46.0
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 2.0e-07 61.6 87 46.0
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 2.0e-07 61.6 133 35.3
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 2.6e-07 61.2 80 40.0
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 2.6e-07 61.2 80 40.0
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 2.6e-07 61.2 154 32.5
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.6e-07 61.2 99 43.4
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 2.6e-07 61.2 92 43.5
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 2.6e-07 61.2 84 42.9
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 2.6e-07 61.2 130 33.8
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 2.6e-07 61.2 85 40.0
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 2.6e-07 61.2 84 42.9
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 3.4e-07 60.8 83 39.8
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 3.4e-07 60.8 144 30.6
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 3.4e-07 60.8 93 40.9
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.4e-07 60.8 83 45.8
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 3.4e-07 60.8 81 40.7
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 3.4e-07 60.8 85 41.2
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 3.4e-07 60.8 116 39.7
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 4.5e-07 60.5 153 35.9
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 4.5e-07 60.5 152 32.2
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 4.5e-07 60.5 84 41.7
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 4.5e-07 60.5 162 34.0
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 4.5e-07 60.5 127 34.6
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.5e-07 60.5 124 38.7
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.5e-07 60.5 124 38.7
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 4.5e-07 60.5 41 65.9
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 5.9e-07 60.1 84 42.9
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.9e-07 60.1 84 42.9
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.9e-07 60.1 84 42.9
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.9e-07 60.1 84 42.9
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.9e-07 60.1 84 42.9
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.9e-07 60.1 82 45.1
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 5.9e-07 60.1 152 35.5
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 7.7e-07 59.7 82 43.9
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 7.7e-07 59.7 85 40.0
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 7.7e-07 59.7 83 43.4
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 7.7e-07 59.7 154 31.2
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 7.7e-07 59.7 87 44.8
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 7.7e-07 59.7 86 46.5
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 7.7e-07 59.7 107 37.4
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 1.0e-06 59.3 87 43.7
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.0e-06 59.3 120 35.8
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.0e-06 59.3 164 32.9
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 1.0e-06 59.3 84 40.5
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 1.3e-06 58.9 150 31.3
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 1.3e-06 58.9 85 41.2
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 1.3e-06 58.9 86 39.5
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 1.7e-06 58.5 87 42.5
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 1.7e-06 58.5 101 38.6
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 2.2e-06 58.2 86 46.5
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 2.2e-06 58.2 155 31.6
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.2e-06 58.2 155 34.2
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 2.9e-06 57.8 86 39.5
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 2.9e-06 57.8 84 41.7
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 2.9e-06 57.8 86 41.9
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 2.9e-06 57.8 87 39.1
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 3.8e-06 57.4 87 42.5
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 3.8e-06 57.4 85 44.7
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 3.8e-06 57.4 108 36.1
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 5.0e-06 57.0 230 29.6
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 5.0e-06 57.0 120 35.0
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 5.0e-06 57.0 84 40.5
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 5.0e-06 57.0 93 36.6
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 5.0e-06 57.0 84 40.5
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 6.5e-06 56.6 34 70.6
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 6.5e-06 56.6 50 54.0
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 6.5e-06 56.6 85 44.7
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 8.5e-06 56.2 115 37.4
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 8.5e-06 56.2 150 34.0
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 8.5e-06 56.2 98 40.8
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 8.5e-06 56.2 78 43.6


User provided reference genes

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