Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 1.4e-84 316.6 214 100.0
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 4.1e-39 165.6 136 62.5
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 5.4e-39 165.2 110 76.4
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 9.2e-39 164.5 110 76.4
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 9.2e-39 164.5 110 76.4
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 1.2e-38 164.1 152 57.9
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 4.6e-38 162.2 140 62.9
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 1.0e-37 161.0 152 58.6
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 1.3e-37 160.6 157 55.4
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 1.3e-37 160.6 112 72.3
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 1.7e-37 160.2 138 61.6
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 1.7e-37 160.2 110 72.7
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 2.3e-37 159.8 144 58.3
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 3.0e-37 159.5 110 70.9
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 3.0e-37 159.5 159 55.3
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 3.9e-37 159.1 152 58.6
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 3.9e-37 159.1 111 71.2
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 3.9e-37 159.1 110 70.9
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 5.0e-37 158.7 110 71.8
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 5.0e-37 158.7 110 71.8
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 5.0e-37 158.7 152 57.2
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 6.6e-37 158.3 110 70.9
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 8.6e-37 157.9 109 72.5
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 8.6e-37 157.9 143 60.1
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 1.1e-36 157.5 110 71.8
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 1.5e-36 157.1 140 60.0
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 1.5e-36 157.1 137 59.1
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 1.9e-36 156.8 110 69.1
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 1.9e-36 156.8 110 71.8
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 1.9e-36 156.8 110 71.8
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 2.5e-36 156.4 110 70.9
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 2.5e-36 156.4 110 70.9
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 2.5e-36 156.4 110 70.9
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 3.3e-36 156.0 110 70.9
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 3.3e-36 156.0 110 70.9
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 3.3e-36 156.0 137 58.4
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 3.3e-36 156.0 110 70.0
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 4.3e-36 155.6 110 69.1
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 4.3e-36 155.6 137 58.4
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 4.3e-36 155.6 110 69.1
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 4.3e-36 155.6 110 70.9
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 5.6e-36 155.2 110 70.0
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 5.6e-36 155.2 110 72.7
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 5.6e-36 155.2 111 71.2
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 7.3e-36 154.8 110 68.2
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 7.3e-36 154.8 110 70.0
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 7.3e-36 154.8 136 58.8
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 7.3e-36 154.8 136 58.8
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 7.3e-36 154.8 136 58.8
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 9.5e-36 154.5 110 70.0
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 1.2e-35 154.1 110 69.1
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 1.6e-35 153.7 110 68.2
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 1.6e-35 153.7 110 69.1
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 1.6e-35 153.7 110 68.2
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 1.6e-35 153.7 157 52.2
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 1.6e-35 153.7 110 68.2
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 2.1e-35 153.3 110 69.1
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 2.1e-35 153.3 110 68.2
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 2.1e-35 153.3 110 68.2
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 2.1e-35 153.3 136 59.6
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 2.8e-35 152.9 136 58.8
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 2.8e-35 152.9 136 58.8
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 2.8e-35 152.9 136 58.8
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 2.8e-35 152.9 136 58.8
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 2.8e-35 152.9 138 58.0
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 2.8e-35 152.9 103 73.8
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 2.8e-35 152.9 139 61.2
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 3.6e-35 152.5 110 70.0
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 3.6e-35 152.5 136 58.8
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 3.6e-35 152.5 133 57.1
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 3.6e-35 152.5 133 57.1
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 3.6e-35 152.5 110 68.2
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 3.6e-35 152.5 110 68.2
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 3.6e-35 152.5 114 66.7
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 4.7e-35 152.1 136 58.8
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 4.7e-35 152.1 110 67.3
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 4.7e-35 152.1 110 67.3
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 4.7e-35 152.1 110 69.1
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 4.7e-35 152.1 110 68.2
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 4.7e-35 152.1 137 56.2
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 6.2e-35 151.8 133 57.1
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 6.2e-35 151.8 139 59.0
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 6.2e-35 151.8 110 69.1
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 6.2e-35 151.8 110 67.3
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 6.2e-35 151.8 108 68.5
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 8.0e-35 151.4 110 69.1
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 8.0e-35 151.4 108 68.5
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 8.0e-35 151.4 110 67.3
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 8.0e-35 151.4 110 69.1
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 8.0e-35 151.4 112 66.1
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 8.0e-35 151.4 137 59.9
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 1.0e-34 151.0 156 52.6
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 1.8e-34 150.2 110 67.3
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 1.8e-34 150.2 157 49.7
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 2.3e-34 149.8 114 64.0
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 2.3e-34 149.8 108 68.5
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 3.1e-34 149.4 110 67.3
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 4.0e-34 149.1 106 68.9
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 5.2e-34 148.7 110 67.3
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 5.2e-34 148.7 110 67.3
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 6.8e-34 148.3 131 59.5
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 8.9e-34 147.9 105 67.6
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 1.2e-33 147.5 141 57.4
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 1.2e-33 147.5 106 67.0
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 1.2e-33 147.5 107 67.3
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.2e-33 147.5 105 67.6
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 1.5e-33 147.1 110 64.5
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 1.5e-33 147.1 110 64.5
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 1.5e-33 147.1 136 56.6
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 3.4e-33 146.0 110 68.2
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 4.4e-33 145.6 143 55.9
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 7.5e-33 144.8 110 66.4
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 1.7e-32 143.7 111 64.0
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 2.2e-32 143.3 110 63.6
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 2.9e-32 142.9 138 54.3
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 8.3e-32 141.4 108 63.0
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 7.0e-31 138.3 137 53.3
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 1.7e-29 133.7 105 65.7
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 6.6e-29 131.7 121 58.7
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 5.6e-28 128.6 85 71.8
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 1.1e-26 124.4 106 58.5
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 2.9e-24 116.3 161 39.8
Cre05.g243800 Chlamydomonas reinhardtii HOM05D006115 ORTHO05D007528 1.7e-21 107.1 143 44.8
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 8.1e-19 98.2 77 58.4
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 4.9e-16 89.0 74 60.8
ATR0693G305 Amborella trichopoda HOM05D006115 ORTHO05D007528 3.0e-13 79.7 91 47.3
TAR627G0228 Trochodendron aralioides HOM05D006115 ORTHO05D007528 1.8e-10 70.5 63 58.7
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 3.4e-09 66.2 97 40.2
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 4.2e-07 59.3 102 32.4
A10p04090 Brassica napus HOM05D007072 ORTHO05D008841 9.3e-07 58.2 98 29.6
BolC5t29149H Brassica oleracea HOM05D007072 ORTHO05D008841 9.3e-07 58.2 98 29.6
BraA10t42680Z Brassica rapa HOM05D007072 ORTHO05D008841 9.3e-07 58.2 98 29.6
Carub.0001s0473 Capsella rubella HOM05D007072 ORTHO05D008841 1.6e-06 57.4 98 29.6
C05p03740 Brassica napus HOM05D007072 ORTHO05D008841 2.1e-06 57.0 98 29.6
Thhalv10008840m.g Eutrema salsugineum HOM05D007072 ORTHO05D008841 2.1e-06 57.0 98 29.6
BcaB02g06864 Brassica carinata HOM05D007072 ORTHO05D008841 2.7e-06 56.6 98 28.6
Sp1g04270 Schrenkiella parvula HOM05D007072 ORTHO05D008841 2.7e-06 56.6 98 29.6
AL1G15220 Arabidopsis lyrata HOM05D007072 ORTHO05D008841 4.6e-06 55.8 98 29.6
AT1G05385 Arabidopsis thaliana HOM05D007072 ORTHO05D008841 6.0e-06 55.5 98 29.6
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 6.0e-06 55.5 98 29.6
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 7.8e-06 55.1 98 28.6


User provided reference genes

Program Settings