Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 3.3e-156 555.1 296 100.0
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 4.1e-130 468.4 250 88.8
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 7.0e-130 467.6 255 88.2
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 7.0e-130 467.6 256 87.5
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.6e-129 466.5 270 86.3
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 2.0e-129 466.1 251 87.6
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 3.5e-129 465.3 251 89.2
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 3.5e-129 465.3 248 89.9
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 3.5e-129 465.3 249 88.8
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 4.5e-129 464.9 252 88.1
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 4.5e-129 464.9 255 87.8
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.5e-129 464.9 255 87.8
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.5e-129 464.9 255 87.8
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 4.5e-129 464.9 250 88.0
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 5.9e-129 464.5 250 88.0
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 5.9e-129 464.5 250 88.0
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 5.9e-129 464.5 249 89.2
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 1.0e-128 463.8 272 87.5
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 1.0e-128 463.8 251 87.6
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 1.0e-128 463.8 249 89.2
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.0e-128 463.8 255 87.8
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 1.0e-128 463.8 248 89.5
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 1.0e-128 463.8 251 88.0
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.3e-128 463.4 251 87.6
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 2.3e-128 462.6 254 87.8
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 2.3e-128 462.6 251 87.6
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 2.9e-128 462.2 249 89.6
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 3.8e-128 461.8 254 86.6
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 5.0e-128 461.5 249 89.2
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 6.6e-128 461.1 252 87.7
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 8.6e-128 460.7 250 87.6
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.1e-127 460.3 254 86.2
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.5e-127 459.9 249 88.4
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 1.5e-127 459.9 251 87.6
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 1.9e-127 459.5 249 87.6
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 1.9e-127 459.5 256 85.9
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 2.5e-127 459.1 252 86.5
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 2.5e-127 459.1 261 85.8
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 3.3e-127 458.8 252 87.3
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 3.3e-127 458.8 250 88.4
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 3.3e-127 458.8 250 87.2
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 3.3e-127 458.8 250 87.2
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 3.3e-127 458.8 270 85.6
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 4.3e-127 458.4 255 85.9
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 4.3e-127 458.4 250 86.8
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 4.3e-127 458.4 249 88.4
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 5.6e-127 458.0 249 88.8
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 7.3e-127 457.6 251 86.9
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 7.3e-127 457.6 251 86.1
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 7.3e-127 457.6 249 88.4
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 9.5e-127 457.2 251 86.9
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 9.5e-127 457.2 250 86.8
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 1.6e-126 456.4 251 86.5
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 2.1e-126 456.1 249 88.0
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 2.1e-126 456.1 250 86.8
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 2.8e-126 455.7 250 87.2
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 3.6e-126 455.3 249 86.3
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 3.6e-126 455.3 250 87.2
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 3.6e-126 455.3 251 86.5
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 6.1e-126 454.5 250 86.8
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 8.0e-126 454.1 252 85.7
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 1.0e-125 453.8 250 86.8
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 1.0e-125 453.8 251 86.5
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.0e-125 453.8 250 87.2
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.0e-125 453.8 272 84.2
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 1.0e-125 453.8 249 86.7
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 1.4e-125 453.4 249 87.1
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.4e-125 453.4 252 86.9
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 1.8e-125 453.0 251 87.6
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 2.3e-125 452.6 250 86.4
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 2.3e-125 452.6 249 87.6
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 2.3e-125 452.6 250 85.6
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 2.3e-125 452.6 296 78.4
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 3.0e-125 452.2 249 86.3
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 1.5e-124 449.9 248 87.1
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 2.0e-124 449.5 240 90.4
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 2.0e-124 449.5 249 87.6
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 2.6e-124 449.1 267 82.4
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 3.4e-124 448.7 244 88.1
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 3.4e-124 448.7 248 87.5
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 5.7e-124 448.0 289 83.0
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 7.5e-124 447.6 248 87.1
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 9.8e-124 447.2 247 85.8
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 9.8e-124 447.2 266 85.7
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 3.7e-123 445.3 249 86.7
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 6.4e-123 444.5 249 85.9
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 2.4e-122 442.6 253 85.4
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.6e-121 439.9 247 85.0
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 1.3e-120 436.8 250 85.2
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 2.3e-120 436.0 249 83.1
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 4.3e-119 431.8 271 81.2
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 5.6e-119 431.4 250 83.2
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 4.4e-116 421.8 242 84.3
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 9.8e-116 420.6 348 64.4
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 7.0e-114 414.5 249 81.1
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 2.7e-113 412.5 223 89.7
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 6.0e-113 411.4 264 77.3
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 3.0e-112 409.1 228 86.4
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 9.5e-111 404.1 250 78.8
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 7.5e-108 394.4 249 75.5
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 1.6e-105 386.7 208 88.9
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 3.3e-95 352.4 191 90.6
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 2.9e-91 339.3 246 68.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 6.4e-91 338.2 190 86.8
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 3.6e-86 322.4 171 91.2
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.8e-85 320.1 171 89.5
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 2.6e-84 316.2 181 86.2
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 1.7e-83 313.5 168 91.1
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 2.3e-80 303.1 183 82.5
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 7.4e-79 298.1 162 87.7
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 8.4e-75 284.6 185 74.6
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.0e-72 277.7 191 75.4
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.3e-72 276.6 164 84.1
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.5e-71 273.1 164 81.7
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.5e-71 273.1 164 83.5
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 4.0e-69 265.8 147 87.8
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 2.2e-67 260.0 155 83.9
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.5e-67 258.5 177 73.4
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.9e-66 256.9 155 83.2
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-65 254.2 213 64.8
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.5e-63 247.3 142 83.1
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 3.3e-63 246.1 156 77.6
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 2.5e-58 229.9 148 77.0
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 7.7e-52 208.4 141 73.8
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.3e-51 207.6 185 57.8
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.2e-50 201.8 154 68.8
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 4.8e-38 162.5 93 82.8
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 8.2e-38 161.8 167 54.5
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 3.3e-31 139.8 76 90.8
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 1.2e-28 131.3 129 56.6
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 2.7e-25 120.2 71 81.7
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 1.4e-24 117.9 59 84.7
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 6.8e-24 115.5 93 62.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.0e-16 91.7 75 58.7
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 3.0e-16 90.1 75 57.3
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 4.9e-14 82.8 46 76.1
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 1.1e-13 81.6 69 56.5


User provided reference genes

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