Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 3178.3 1599 100.0
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 3178.3 1599 100.0
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 1478.0 1610 50.6
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1421.8 1602 49.2
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 1409.0 1604 49.3
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 1402.1 1570 49.8
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 1402.1 1609 48.5
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 1391.7 1604 48.9
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 1384.8 1607 48.5
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 1375.5 1590 48.2
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 1369.8 1660 47.3
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 1359.0 1600 48.4
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 1357.0 1601 48.3
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1355.5 1628 49.0
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 1350.5 1554 48.8
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1350.1 1606 47.6
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 1345.1 1607 47.8
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 1337.4 1600 47.8
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 1334.7 1540 47.9
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1328.9 1600 46.9
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1327.8 1595 46.9
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 1318.9 1602 47.0
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 1313.5 1610 47.1
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 1310.8 1679 45.6
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1310.0 1536 47.8
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 1310.0 1536 47.7
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1308.1 1536 47.9
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1308.1 1624 46.1
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 1307.4 1569 47.0
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1305.0 1564 48.5
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 1302.7 1586 47.4
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1302.0 1593 46.6
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1298.5 1606 47.5
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 1294.6 1607 47.0
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 1293.9 1605 46.5
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1293.1 1628 46.6
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1288.5 1621 46.3
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1283.1 1591 46.0
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1282.7 1623 46.5
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 1282.3 1566 46.6
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1281.9 1591 45.9
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 1281.9 1606 46.3
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1281.5 1613 46.7
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1280.8 1592 46.3
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 1280.0 1518 48.1
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 1280.0 1586 46.0
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 1279.2 1552 46.5
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1275.8 1689 45.2
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 1270.8 1589 46.6
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1270.4 1611 45.7
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1265.0 1607 45.3
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 1262.7 1611 45.7
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 1261.5 1552 46.0
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1261.1 1580 45.8
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 1260.0 1530 46.7
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 1257.7 1640 45.7
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1248.4 1591 45.7
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 1248.0 1635 45.0
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 1247.6 1552 46.5
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 1245.0 1527 46.4
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 1244.6 1611 45.4
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 1243.4 1547 45.5
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1228.4 1556 45.4
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 1224.9 1589 45.1
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1209.9 1537 46.0
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1201.8 1614 44.7
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1199.9 1646 44.7
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 1195.6 1611 44.8
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1193.7 1533 44.4
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1190.3 1398 47.4
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1187.9 1623 44.5
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1185.2 1531 43.8
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 1178.7 1517 44.5
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 1175.2 1520 43.6
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 1171.4 1516 44.1
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 1171.0 1595 42.9
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 1170.6 1579 44.7
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 1161.7 1590 42.7
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 1159.4 1437 46.6
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1149.4 1542 43.2
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 1149.4 1597 42.5
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1147.9 1517 43.2
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1139.8 1517 42.8
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1138.3 1513 43.2
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1138.3 1513 43.2
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1132.5 1405 46.2
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1127.1 1592 43.0
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1126.7 1774 40.9
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1112.8 1404 45.9
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1103.6 1587 41.7
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1100.9 1522 42.5
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1095.1 1515 42.1
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1086.2 1608 41.0
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 3.3e-311 1072.4 1606 42.8
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.5e-308 1062.0 1439 44.0
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 2.3e-304 1049.7 1272 46.7
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 2.8e-297 1026.2 1506 41.1
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 3.4e-287 992.6 1264 44.9
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 1.9e-285 986.9 1219 46.1
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 5.8e-271 938.7 1676 37.5
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 1.8e-264 917.1 1222 44.1
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 7.6e-239 832.0 1012 46.5
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 3.5e-236 823.2 1661 35.5
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 1.6e-233 814.3 787 53.0
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 2.7e-220 770.4 1009 44.2
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 3.0e-219 766.9 782 51.9
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.1e-213 748.4 792 50.6
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 6.1e-212 742.7 1077 41.8
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 2.0e-202 711.1 860 46.3
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 3.7e-201 706.8 1505 35.1
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 2.5e-181 641.0 1603 31.6
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 2.2e-169 601.3 1604 31.2
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 4.7e-164 583.6 797 45.9
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.1e-155 555.8 1334 31.9
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 1.3e-148 532.3 1027 33.9
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 7.1e-144 516.5 594 45.3
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 2.6e-138 498.0 1126 34.0
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 2.9e-137 494.6 440 56.4
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.5e-122 445.7 680 43.5
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.6e-109 401.7 331 58.9
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.1e-91 343.2 801 33.0
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-78 299.7 1095 26.8
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.4e-75 289.7 514 40.3
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 2.7e-74 285.4 525 40.4
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 3.0e-65 255.4 285 50.2
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.8e-63 248.8 306 42.8
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.5e-56 225.7 233 53.2
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 9.9e-53 213.8 192 58.3
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 4.4e-45 188.3 157 59.2
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 7.6e-37 161.0 237 41.4
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 7.1e-35 154.5 637 25.7
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 2.1e-34 152.9 322 36.6
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 3.0e-33 149.1 231 42.4
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 9.0e-30 137.5 271 35.1
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.2e-26 127.1 72 72.2
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 5.6e-24 118.2 324 32.1
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 1.8e-22 113.2 94 58.5
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 1.5e-21 110.2 340 31.8
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 1.0e-17 97.4 133 45.1
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 8.2e-15 87.8 84 51.2
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 8.2e-15 87.8 84 51.2
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 5.8e-13 81.6 113 42.5
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 7.6e-13 81.3 113 42.5
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 3.8e-12 79.0 158 31.0
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 4.9e-12 78.6 57 59.6
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 6.7e-09 68.2 99 39.4
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 5.7e-08 65.1 91 41.8
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 2.2e-07 63.2 182 25.8
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 1.1e-06 60.8 164 27.4
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 9.0e-06 57.8 67 38.8


User provided reference genes

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