Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.7e-249 865.5 436 100.0
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 7.2e-123 444.9 368 59.8
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 2.1e-122 443.4 365 60.3
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 3.7e-119 432.6 364 59.3
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 3.1e-118 429.5 365 58.9
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 4.1e-118 429.1 364 59.3
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 6.9e-118 428.3 365 58.9
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 2.6e-117 426.4 364 58.5
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 1.0e-116 424.5 363 57.3
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 1.3e-116 424.1 363 58.4
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 3.8e-116 422.5 364 58.0
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 1.1e-115 421.0 364 57.7
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 1.1e-115 421.0 363 58.1
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 3.2e-115 419.5 364 57.7
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 4.2e-115 419.1 364 58.8
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 4.2e-115 419.1 364 58.8
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 4.2e-115 419.1 369 56.9
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 5.5e-115 418.7 363 59.2
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 1.6e-114 417.2 364 57.7
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 6.1e-114 415.2 363 55.4
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 6.1e-114 415.2 362 57.2
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 7.9e-114 414.8 363 56.5
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 1.0e-113 414.5 363 57.0
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 1.0e-113 414.5 363 58.1
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 1.0e-113 414.5 381 55.6
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 3.0e-113 412.9 363 56.7
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 6.7e-113 411.8 363 55.6
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 1.5e-112 410.6 365 56.4
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 2.0e-112 410.2 364 56.9
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 2.6e-112 409.8 363 53.7
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 3.3e-112 409.5 364 57.4
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 3.3e-112 409.5 370 56.5
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 4.4e-112 409.1 363 56.2
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 5.7e-112 408.7 363 54.3
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 7.4e-112 408.3 363 54.8
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 7.4e-112 408.3 363 57.0
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 1.3e-111 407.5 363 53.7
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 1.3e-111 407.5 369 56.4
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 2.2e-111 406.8 363 57.3
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 2.8e-111 406.4 364 54.4
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 2.8e-111 406.4 363 54.3
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 2.4e-110 403.3 376 55.1
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 2.4e-110 403.3 363 53.4
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 3.1e-110 402.9 363 55.4
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 1.2e-109 401.0 372 53.2
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 2.6e-109 399.8 363 53.4
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 2.6e-109 399.8 363 55.1
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 3.5e-109 399.4 341 59.8
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 7.7e-109 398.3 367 54.0
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 1.0e-108 397.9 363 54.0
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 8.5e-108 394.8 378 52.9
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 9.4e-107 391.3 363 55.9
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 1.2e-106 391.0 379 54.6
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 2.7e-106 389.8 368 55.2
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 3.6e-106 389.4 363 55.4
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 1.4e-105 387.5 370 52.4
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 2.3e-105 386.7 389 50.6
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 2.3e-105 386.7 384 51.3
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 3.9e-105 386.0 369 54.7
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 3.9e-105 386.0 361 53.2
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 5.7e-104 382.1 363 53.2
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 7.4e-104 381.7 365 52.3
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 2.2e-103 380.2 364 53.6
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 4.8e-103 379.0 363 53.4
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 6.3e-103 378.6 354 52.8
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.8e-102 377.1 337 56.4
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 5.3e-102 375.6 378 51.6
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 9.1e-102 374.8 363 52.3
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 7.7e-101 371.7 377 50.4
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 2.2e-100 370.2 367 54.0
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 1.5e-99 367.5 364 53.6
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 2.5e-99 366.7 390 51.0
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 4.0e-97 359.4 365 52.3
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 1.5e-96 357.5 365 51.2
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 2.6e-96 356.7 333 53.2
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 3.4e-96 356.3 425 48.2
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 4.4e-96 355.9 363 50.4
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 5.7e-96 355.5 354 52.8
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.1e-94 351.3 387 49.1
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 4.1e-94 349.4 364 52.2
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 9.1e-94 348.2 363 50.7
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 2.0e-93 347.1 376 48.1
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 2.7e-93 346.7 363 50.7
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 4.2e-91 339.3 304 56.2
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 1.1e-86 324.7 328 50.0
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 4.1e-86 322.8 355 49.3
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 7.7e-85 318.5 363 46.6
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 3.8e-84 316.2 349 49.0
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.8e-81 307.4 363 47.4
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 7.5e-80 302.0 238 61.3
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 1.3e-79 301.2 238 61.3
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 3.2e-78 296.6 238 61.8
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 5.4e-78 295.8 238 59.2
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 5.4e-78 295.8 238 63.0
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 2.0e-77 293.9 238 60.9
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.3e-76 291.2 238 60.9
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 2.9e-76 290.0 238 61.3
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 4.7e-74 282.7 366 42.9
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 6.0e-69 265.8 221 61.1
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 4.7e-66 256.1 292 49.0
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 1.8e-65 254.2 238 53.8
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 1.8e-65 254.2 362 44.2
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 2.2e-63 247.3 306 45.1
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 3.4e-56 223.4 263 47.1
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 2.9e-55 220.3 307 40.4
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 3.2e-46 190.3 370 35.4
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 6.2e-42 176.0 385 32.7
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 1.5e-40 171.4 363 32.8
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 8.1e-34 149.1 344 31.1
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 1.5e-32 144.8 99 69.7
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 3.0e-28 130.6 129 49.6
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 2.5e-27 127.5 126 46.0
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 3.7e-26 123.6 130 46.9
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 1.1e-25 122.1 129 45.7
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 1.4e-25 121.7 132 47.0
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 4.0e-25 120.2 90 65.6
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 2.6e-24 117.5 55 100.0
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 2.4e-17 94.4 187 34.8
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 7.6e-16 89.4 100 50.0
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 7.9e-13 79.3 108 40.7
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 1.3e-12 78.6 104 40.4
Cfa024968 Carpinus fangiana HOM05D006210 ORTHO05D007510 5.1e-12 76.6 225 29.8
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 6.7e-12 76.3 75 48.0
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 3.1e-09 67.4 92 38.0
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 9.0e-09 65.9 128 35.2
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 2.0e-08 64.7 103 37.9
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 1.3e-07 62.0 139 37.4
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 1.3e-07 62.0 147 33.3
FAN18G0790 Fragaria x ananassa HOM05D001310 ORTHO05D001283 1.3e-07 62.0 116 44.0
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 2.2e-07 61.2 139 37.4
FAN09G3340 Fragaria x ananassa HOM05D000115 ORTHO05D005317 2.9e-07 60.8 179 32.4
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 2.9e-07 60.8 147 33.3
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 3.8e-07 60.5 159 32.7
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 5.0e-07 60.1 181 29.8
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 8.5e-07 59.3 179 30.7
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 8.5e-07 59.3 147 33.3
FAN08G1056 Fragaria x ananassa HOM05D001310 ORTHO05D001283 8.5e-07 59.3 175 35.4
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 1.1e-06 58.9 151 31.8
Sopen03g037650 Solanum pennellii HOM05D001310 ORTHO05D001283 1.1e-06 58.9 102 43.1
CiPaw.03G188000 Carya illinoinensis HOM05D000115 ORTHO05D005317 1.4e-06 58.5 163 31.3
Medtr3g452710 Medicago truncatula HOM05D000115 ORTHO05D005317 1.9e-06 58.2 140 35.0
THA.LOC104820350 Tarenaya hassleriana HOM05D001310 ORTHO05D001283 1.9e-06 58.2 98 43.9
FAN05G2006 Fragaria x ananassa HOM05D000115 ORTHO05D005317 2.5e-06 57.8 147 35.4
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 2.5e-06 57.8 157 30.6
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 3.2e-06 57.4 142 33.8
FAN14G5116 Fragaria x ananassa HOM05D000115 ORTHO05D005317 4.2e-06 57.0 147 35.4
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 4.2e-06 57.0 133 33.8
Oeu026480.1 Olea europaea HOM05D000115 ORTHO05D005317 4.2e-06 57.0 153 35.3
GSVIVG01018026001 Vitis vinifera HOM05D006451 ORTHO05D007680 4.2e-06 57.0 161 32.9
MD14G1236500 Malus domestica HOM05D001310 ORTHO05D001283 5.5e-06 56.6 132 34.8
Nitab4.5_0003401g0010 Nicotiana tabacum HOM05D001310 ORTHO05D001283 5.5e-06 56.6 132 36.4
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 5.5e-06 56.6 125 35.2
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 5.5e-06 56.6 169 32.5
HPP92_021772 Vanilla planifolia HOM05D000115 ORTHO05D005317 5.5e-06 56.6 198 29.8
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 9.4e-06 55.8 150 28.0
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 9.4e-06 55.8 150 28.0
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 9.4e-06 55.8 155 32.9
Solyc03g118690.4 Solanum lycopersicum HOM05D001310 ORTHO05D001283 9.4e-06 55.8 129 38.8
SGA_v2.0_scaffold9G04898 Striga asiatica HOM05D000115 ORTHO05D005317 9.4e-06 55.8 152 34.2
TAR626G1968 Trochodendron aralioides HOM05D000115 ORTHO05D005317 9.4e-06 55.8 141 31.2


User provided reference genes

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