Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 0.0e+00 3402.8 1773 100.0
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.0e-22 113.2 594 27.4
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.7e-19 102.8 574 25.3
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.5e-19 102.4 696 25.4
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 7.9e-19 101.3 574 26.8
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.0e-18 100.9 414 29.5
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 5.1e-18 98.6 397 27.5
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 2.5e-17 96.3 668 23.4
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 4.3e-17 95.5 388 27.1
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 9.7e-17 94.4 581 26.3
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 1.6e-16 93.6 389 23.9
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.4e-15 89.7 666 24.2
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 6.9e-15 88.2 445 25.8
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 9.0e-15 87.8 563 24.0
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 1.5e-14 87.0 575 25.4
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 4.5e-14 85.5 954 22.4
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 5.9e-14 85.1 388 26.8
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 7.7e-14 84.7 390 26.4
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 7.7e-14 84.7 424 26.9
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 1.0e-13 84.3 93 51.6
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.0e-13 84.3 493 26.0
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.0e-13 84.3 445 25.8
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 1.3e-13 84.0 389 24.9
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 1.3e-13 84.0 493 24.9
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.7e-13 83.6 448 25.7
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 1.7e-13 83.6 390 25.9
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 2.2e-13 83.2 393 27.0
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 2.2e-13 83.2 394 26.6
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.9e-13 82.8 565 23.2
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 3.8e-13 82.4 389 25.7
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.0e-13 82.0 573 24.4
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 1.1e-12 80.9 437 24.9
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 1.9e-12 80.1 390 25.4
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 2.5e-12 79.7 392 26.8
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 3.2e-12 79.3 418 27.3
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.2e-12 79.3 88 51.1
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 4.2e-12 79.0 392 25.8
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 4.2e-12 79.0 413 24.7
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 7.2e-12 78.2 390 25.4
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 9.4e-12 77.8 392 26.3
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.6e-11 77.0 681 24.8
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 2.1e-11 76.6 515 26.4
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 2.7e-11 76.3 386 25.1
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.6e-11 75.9 406 25.6
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.6e-11 75.9 406 25.6
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.6e-11 75.9 717 23.6
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 4.6e-11 75.5 418 26.8
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 4.6e-11 75.5 279 26.5
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 6.1e-11 75.1 321 28.0
SEGI_04996 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 7.9e-11 74.7 104 43.3
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.0e-10 74.3 578 24.2
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 1.4e-10 73.9 282 29.1
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.8e-10 73.6 319 29.2
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 2.3e-10 73.2 772 24.5
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.0e-10 72.8 772 24.5
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 3.0e-10 72.8 710 24.2
SEGI_14105 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 3.0e-10 72.8 408 24.8
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 3.0e-10 72.8 282 28.7
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.0e-10 72.8 90 46.7
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.9e-10 72.4 720 23.6
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.9e-10 72.4 720 23.6
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 3.9e-10 72.4 568 23.1
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 6.7e-10 71.6 390 24.4
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 8.8e-10 71.2 85 48.2
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 8.8e-10 71.2 544 23.5
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 8.8e-10 71.2 276 29.3
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 1.1e-09 70.9 83 45.8
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 1.1e-09 70.9 84 47.6
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.1e-09 70.9 266 28.6
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.1e-09 70.9 90 45.6
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.5e-09 70.5 70 54.3
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 1.5e-09 70.5 679 22.5
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 1.5e-09 70.5 564 22.9
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.0e-09 70.1 375 28.3
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 2.0e-09 70.1 389 24.7
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 2.0e-09 70.1 673 23.5
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 2.0e-09 70.1 392 25.0
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 2.5e-09 69.7 70 52.9
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.3e-09 69.3 384 24.5
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 3.3e-09 69.3 77 50.6
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.3e-09 69.3 592 22.8
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 4.3e-09 68.9 70 54.3
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 4.3e-09 68.9 482 24.5
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 5.7e-09 68.6 704 23.9
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 5.7e-09 68.6 69 53.6
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 7.4e-09 68.2 792 23.9
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 9.7e-09 67.8 71 52.1
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 9.7e-09 67.8 86 48.8
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 9.7e-09 67.8 71 53.5
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.3e-08 67.4 768 23.2
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 2.2e-08 66.6 810 23.5
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.2e-08 66.6 388 24.7
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 2.8e-08 66.2 111 36.0
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.7e-08 65.9 101 38.6
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 4.8e-08 65.5 73 45.2
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 4.8e-08 65.5 73 43.8
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 6.3e-08 65.1 69 52.2
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 6.3e-08 65.1 389 24.9
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 8.2e-08 64.7 386 25.4
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 8.2e-08 64.7 77 49.4
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 1.4e-07 63.9 309 27.2
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.4e-07 63.9 69 49.3
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.8e-07 63.5 73 45.2
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.8e-07 63.5 193 33.2
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.8e-07 63.5 70 50.0
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 1.8e-07 63.5 125 36.8
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.8e-07 63.5 63 47.6
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 1.8e-07 63.5 78 50.0
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.4e-07 63.2 70 50.0
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 2.4e-07 63.2 63 47.6
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.4e-07 63.2 88 38.6
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 3.1e-07 62.8 70 50.0
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 3.1e-07 62.8 57 47.4
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 3.1e-07 62.8 984 22.5
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.1e-07 62.8 70 50.0
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 4.1e-07 62.4 76 48.7
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 4.1e-07 62.4 392 23.2
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 5.3e-07 62.0 70 48.6
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 5.3e-07 62.0 390 23.8
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 5.3e-07 62.0 130 35.4
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 5.3e-07 62.0 61 47.5
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 6.9e-07 61.6 53 50.9
MD04G1026500 Malus domestica HOM05D010496 ORTHO05D010879 6.9e-07 61.6 51 52.9
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 6.9e-07 61.6 91 39.6
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 9.1e-07 61.2 63 46.0
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 1.2e-06 60.8 69 47.8
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.2e-06 60.8 70 48.6
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 1.2e-06 60.8 73 43.8
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 1.2e-06 60.8 108 42.6
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-06 60.5 257 30.0
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.5e-06 60.5 94 42.6
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 1.5e-06 60.5 80 46.2
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 2.0e-06 60.1 133 33.8
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.0e-06 60.1 68 45.6
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 2.6e-06 59.7 70 45.7
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 2.6e-06 59.7 70 45.7
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 2.6e-06 59.7 70 45.7
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.6e-06 59.7 151 31.1
FAN22G0913 Fragaria x ananassa HOM05D010496 ORTHO05D010879 2.6e-06 59.7 66 42.4
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 3.4e-06 59.3 273 26.7
FAN07G2091 Fragaria x ananassa HOM05D010496 ORTHO05D010879 3.4e-06 59.3 66 42.4
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 3.4e-06 59.3 49 55.1
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 3.4e-06 59.3 75 44.0
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 3.4e-06 59.3 85 42.4
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.4e-06 59.3 96 40.6
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 3.4e-06 59.3 50 54.0
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 4.5e-06 58.9 106 37.7
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 4.5e-06 58.9 270 27.0
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 4.5e-06 58.9 270 27.0
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 4.5e-06 58.9 67 47.8
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 4.5e-06 58.9 67 47.8
RcHm_v2.0_Chr4g0410661 Rosa chinensis HOM05D010496 ORTHO05D010879 4.5e-06 58.9 66 43.9
Haze_11711 Corylus avellana HOM05D010496 ORTHO05D010879 5.9e-06 58.5 72 41.7
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 5.9e-06 58.5 49 57.1
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 5.9e-06 58.5 69 42.0
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 5.9e-06 58.5 51 52.9
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 7.7e-06 58.2 58 50.0
VMungo0720G2993 Vigna mungo HOM05D011141 ORTHO05D010879 7.7e-06 58.2 66 45.5


User provided reference genes

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