Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04647 Sequoiadendron giganteum HOM05D002753 ORTHO05D003097 7.9e-88 327.0 159 100.0
CANSAT54G2703 Cannabis sativa HOM05D002753 ORTHO05D003097 1.6e-11 73.6 108 41.7
Pp3c4_5290 Physcomitrium patens HOM05D002753 ORTHO05D003097 4.6e-11 72.0 65 53.8
Actinidia28017 Actinidia chinensis HOM05D002753 ORTHO05D003097 2.3e-10 69.7 95 41.1
Atru.chr6.1395 Acer truncatum HOM05D002753 ORTHO05D003097 5.1e-10 68.6 95 42.1
Glyma.08G065200 Glycine max HOM05D002753 ORTHO05D003097 1.5e-09 67.0 95 43.2
Actinidia28019 Actinidia chinensis HOM05D002753 ORTHO05D003097 2.5e-09 66.2 67 49.3
TWI23G0822 Tripterygium wilfordii HOM05D002753 ORTHO05D003097 2.5e-09 66.2 67 49.3
TAR376G1183 Trochodendron aralioides HOM05D002753 ORTHO05D003097 2.5e-09 66.2 80 43.8
PSO339G2269 Papaver somniferum HOM05D002753 ORTHO05D003097 3.3e-09 65.9 65 47.7
PSO339G4496 Papaver somniferum HOM05D002753 ORTHO05D003097 3.3e-09 65.9 65 47.7
Sed0002549 Sechium edule HOM05D002753 ORTHO05D003097 4.3e-09 65.5 66 48.5
Aqoxy6G00650 Aquilegia oxysepala HOM05D002753 ORTHO05D003097 7.3e-09 64.7 123 33.3
arahy.Tifrunner.gnm1.ann1.JKRU9X Arachis hypogaea HOM05D002753 ORTHO05D003097 7.3e-09 64.7 93 40.9
Lalb_Chr16g0383061 Lupinus albus HOM05D002753 ORTHO05D003097 9.6e-09 64.3 66 51.5
Manes.10G093500 Manihot esculenta HOM05D002753 ORTHO05D003097 9.6e-09 64.3 67 47.8
Thecc.02G125700 Theobroma cacao HOM05D002753 ORTHO05D003097 9.6e-09 64.3 80 42.5
Atru.chr6.1339 Acer truncatum HOM05D002753 ORTHO05D003097 1.3e-08 63.9 95 40.0
ClCG09G016500 Citrullus lanatus HOM05D002753 ORTHO05D003097 1.3e-08 63.9 80 41.2
Duzib132G0158 Durio zibethinus HOM05D002753 ORTHO05D003097 1.3e-08 63.9 80 42.5
Nitab4.5_0005163g0040 Nicotiana tabacum HOM05D002753 ORTHO05D003097 1.3e-08 63.9 65 47.7
AagrBONN_evm.TU.Sc2ySwM_117.2467 Anthoceros agrestis HOM05D002753 ORTHO05D003097 1.6e-08 63.5 68 48.5
CsaV3_1G005210 Cucumis sativus L. HOM05D002753 ORTHO05D003097 1.6e-08 63.5 60 48.3
Gorai.013G053900 Gossypium raimondii HOM05D002753 ORTHO05D003097 1.6e-08 63.5 80 42.5
PSO801G0587 Papaver somniferum HOM05D002753 ORTHO05D003097 1.6e-08 63.5 65 46.2
Ciclev10029816m.g Citrus clementina HOM05D002753 ORTHO05D003097 2.8e-08 62.8 95 36.8
MELO3C001960.2 Cucumis melo HOM05D002753 ORTHO05D003097 2.8e-08 62.8 66 47.0
Manes.02G220100 Manihot esculenta HOM05D002753 ORTHO05D003097 2.8e-08 62.8 65 46.2
SGA_v2.0_scaffold90G27771 Striga asiatica HOM05D002753 ORTHO05D003097 2.8e-08 62.8 66 47.0
CSS0000609 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 3.6e-08 62.4 67 47.8
CsaV3_7G007440 Cucumis sativus L. HOM05D002753 ORTHO05D003097 3.6e-08 62.4 80 40.0
FAN04G0651 Fragaria x ananassa HOM05D002753 ORTHO05D003097 3.6e-08 62.4 65 46.2
Gohir.D13G048300 Gossypium hirsutum HOM05D002753 ORTHO05D003097 3.6e-08 62.4 80 42.5
Nitab4.5_0000935g0210 Nicotiana tabacum HOM05D002753 ORTHO05D003097 3.6e-08 62.4 65 47.7
CSS0006440 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 4.8e-08 62.0 67 47.8
CSS0037026 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 4.8e-08 62.0 67 47.8
AUR62027087 Chenopodium quinoa HOM05D002753 ORTHO05D003097 4.8e-08 62.0 65 46.2
Dinv08972 Davidia involucrata HOM05D002753 ORTHO05D003097 4.8e-08 62.0 65 47.7
FvH4_5g18120 Fragaria vesca HOM05D002753 ORTHO05D003097 4.8e-08 62.0 65 46.2
FAN08G1509 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.8e-08 62.0 65 46.2
FAN18G3210 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.8e-08 62.0 65 46.2
AUR62013618 Chenopodium quinoa HOM05D002753 ORTHO05D003097 6.2e-08 61.6 67 49.3
Ca_18410_v3 Cicer arietinum L. HOM05D002753 ORTHO05D003097 6.2e-08 61.6 65 50.8
ClCG04G012490 Citrullus lanatus HOM05D002753 ORTHO05D003097 6.2e-08 61.6 65 46.2
MELO3C018558.2 Cucumis melo HOM05D002753 ORTHO05D003097 6.2e-08 61.6 80 40.0
Gohir.A13G049800 Gossypium hirsutum HOM05D002753 ORTHO05D003097 6.2e-08 61.6 80 41.2
PGR142G0966 Punica granatum HOM05D002753 ORTHO05D003097 6.2e-08 61.6 95 36.8
RcHm_v2.0_Chr2g0118161 Rosa chinensis HOM05D002753 ORTHO05D003097 6.2e-08 61.6 80 45.0
ATR0807G174 Amborella trichopoda HOM05D002753 ORTHO05D003097 8.1e-08 61.2 65 44.6
AL6G19990 Arabidopsis lyrata HOM05D002753 ORTHO05D003097 8.1e-08 61.2 82 43.9
CAN.G637.18 Capsicum annuum HOM05D002753 ORTHO05D003097 8.1e-08 61.2 66 47.0
Cpa.g.sc21.59 Carica papaya HOM05D002753 ORTHO05D003097 8.1e-08 61.2 60 46.7
CiPaw.05G027300 Carya illinoinensis HOM05D002753 ORTHO05D003097 8.1e-08 61.2 95 38.9
Thhalv10013860m.g Eutrema salsugineum HOM05D002753 ORTHO05D003097 8.1e-08 61.2 82 45.1
FAN23G1321 Fragaria x ananassa HOM05D002753 ORTHO05D003097 8.1e-08 61.2 81 43.2
Potri.001G285000 Populus trichocarpa HOM05D002753 ORTHO05D003097 8.1e-08 61.2 65 46.2
SalBow5G2867 Salvia bowleyana HOM05D002753 ORTHO05D003097 8.1e-08 61.2 66 45.5
Zm00001eb250910 Zea mays HOM05D002753 ORTHO05D003097 8.1e-08 61.2 65 47.7
AT5G09580 Arabidopsis thaliana HOM05D002753 ORTHO05D003097 1.1e-07 60.8 82 43.9
CAN.G504.39 Capsicum annuum HOM05D002753 ORTHO05D003097 1.1e-07 60.8 65 47.7
AUR62004230 Chenopodium quinoa HOM05D002753 ORTHO05D003097 1.1e-07 60.8 67 49.3
Lj4g0007428 Lotus japonicus HOM05D002753 ORTHO05D003097 1.1e-07 60.8 95 40.0
Lj4g0024024 Lotus japonicus HOM05D002753 ORTHO05D003097 1.1e-07 60.8 95 40.0
LjContig00139g0003532 Lotus japonicus HOM05D002753 ORTHO05D003097 1.1e-07 60.8 95 40.0
LjContig00139g0010456 Lotus japonicus HOM05D002753 ORTHO05D003097 1.1e-07 60.8 95 40.0
LjContig00139g0015911 Lotus japonicus HOM05D002753 ORTHO05D003097 1.1e-07 60.8 95 40.0
Nitab4.5_0005200g0050 Nicotiana tabacum HOM05D002753 ORTHO05D003097 1.1e-07 60.8 66 47.0
RcHm_v2.0_Chr7g0177491 Rosa chinensis HOM05D002753 ORTHO05D003097 1.1e-07 60.8 65 47.7
Sed0024829 Sechium edule HOM05D002753 ORTHO05D003097 1.1e-07 60.8 65 46.2
TPR.G36451 Trifolium pratense HOM05D002753 ORTHO05D003097 1.1e-07 60.8 65 49.2
CiPaw.16G101300 Carya illinoinensis HOM05D002753 ORTHO05D003097 1.4e-07 60.5 66 47.0
Medtr1g053780 Medicago truncatula HOM05D002753 ORTHO05D003097 1.4e-07 60.5 65 50.8
Medtr4g092970 Medicago truncatula HOM05D002753 ORTHO05D003097 1.4e-07 60.5 65 50.8
QL10p032039 Quercus lobata HOM05D002753 ORTHO05D003097 1.4e-07 60.5 72 43.1
CSS0023717 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 1.8e-07 60.1 65 47.7
FAN13G0967 Fragaria x ananassa HOM05D002753 ORTHO05D003097 1.8e-07 60.1 69 42.0
Peaxi162Scf00016g03459 Petunia axillaris HOM05D002753 ORTHO05D003097 1.8e-07 60.1 65 49.2
SalBow5G1094 Salvia bowleyana HOM05D002753 ORTHO05D003097 1.8e-07 60.1 60 46.7
Dinv30988 Davidia involucrata HOM05D002753 ORTHO05D003097 2.4e-07 59.7 66 43.9
Migut.B00526 Erythranthe guttata HOM05D002753 ORTHO05D003097 2.4e-07 59.7 67 46.3
FvH4_1g23320 Fragaria vesca HOM05D002753 ORTHO05D003097 2.4e-07 59.7 80 43.8
MBI08_g09789_MAGBIO Magnolia biondii HOM05D002753 ORTHO05D003097 2.4e-07 59.7 59 47.5
Nitab4.5_0001180g0020 Nicotiana tabacum HOM05D002753 ORTHO05D003097 2.4e-07 59.7 66 45.5
Phvul.002G215600 Phaseolus vulgaris HOM05D002753 ORTHO05D003097 2.4e-07 59.7 65 49.2
QL11p026419 Quercus lobata HOM05D002753 ORTHO05D003097 2.4e-07 59.7 74 43.2
SalBow6G5254 Salvia bowleyana HOM05D002753 ORTHO05D003097 2.4e-07 59.7 65 46.2
AUR62030927 Chenopodium quinoa HOM05D002753 ORTHO05D003097 3.1e-07 59.3 65 43.1
QL10p032155 Quercus lobata HOM05D002753 ORTHO05D003097 3.1e-07 59.3 66 45.5
Rhsim05G0097100 Rhododendron simsii HOM05D002753 ORTHO05D003097 3.1e-07 59.3 65 47.7
Hund00392 Selenicereus undatus HOM05D002753 ORTHO05D003097 3.1e-07 59.3 65 44.6
EL10Ac9g22119 Beta vulgaris HOM05D002753 ORTHO05D003097 4.0e-07 58.9 65 46.2
Glyma.07G184100 Glycine max HOM05D002753 ORTHO05D003097 4.0e-07 58.9 64 48.4
MD06G1236700 Malus domestica HOM05D002753 ORTHO05D003097 4.0e-07 58.9 66 45.5
Medtr1g054100 Medicago truncatula HOM05D002753 ORTHO05D003097 4.0e-07 58.9 64 50.0
Nn3g18508 Nelumbo nucifera HOM05D002753 ORTHO05D003097 4.0e-07 58.9 60 46.7
Prupe.5G241200 Prunus persica HOM05D002753 ORTHO05D003097 4.0e-07 58.9 66 45.5
PGR142G3779 Punica granatum HOM05D002753 ORTHO05D003097 4.0e-07 58.9 65 44.6
SalBow5G3512 Salvia bowleyana HOM05D002753 ORTHO05D003097 4.0e-07 58.9 110 35.5
Solyc01g106190.4 Solanum lycopersicum HOM05D002753 ORTHO05D003097 4.0e-07 58.9 65 47.7
Sopen01g048580 Solanum pennellii HOM05D002753 ORTHO05D003097 4.0e-07 58.9 65 47.7
CANSAT01G0744 Cannabis sativa HOM05D002753 ORTHO05D003097 5.3e-07 58.5 65 47.7
Sp6g33790 Schrenkiella parvula HOM05D002753 ORTHO05D003097 5.3e-07 58.5 82 42.7
PGSC0003DMG400031039 Solanum tuberosum HOM05D002753 ORTHO05D003097 5.3e-07 58.5 66 43.9
Ah.01g024130 Amaranthus hybridus HOM05D002753 ORTHO05D003097 6.9e-07 58.2 65 44.6
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 6.9e-07 58.2 80 38.8
DCAR_010212 Daucus carota HOM05D002753 ORTHO05D003097 6.9e-07 58.2 66 42.4
Potri.015G030300 Populus trichocarpa HOM05D002753 ORTHO05D003097 6.9e-07 58.2 60 45.0
Sabra16G0177700 Salix brachista HOM05D002753 ORTHO05D003097 6.9e-07 58.2 65 44.6
MSTRG.23204 Avicennia marina HOM05D002753 ORTHO05D003097 9.0e-07 57.8 66 42.4
CSS0028145 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 9.0e-07 57.8 75 41.3
Cpa.g.sc1376.1 Carica papaya HOM05D002753 ORTHO05D003097 9.0e-07 57.8 65 43.1
VMungo0251G0167 Vigna mungo HOM05D002753 ORTHO05D003097 9.0e-07 57.8 65 47.7
GSVIVG01038511001 Vitis vinifera HOM05D002753 ORTHO05D003097 9.0e-07 57.8 67 47.8
Psat7g103160 Pisum sativum HOM05D002753 ORTHO05D003097 1.2e-06 57.4 65 47.7
VMungo0464G0886 Vigna mungo HOM05D002753 ORTHO05D003097 1.2e-06 57.4 67 46.3
Carub.0003s2766 Capsella rubella HOM05D002753 ORTHO05D003097 1.5e-06 57.0 67 47.8
Cc04_g08920 Coffea canephora HOM05D002753 ORTHO05D003097 1.5e-06 57.0 60 45.0
DCAR_001841 Daucus carota HOM05D002753 ORTHO05D003097 1.5e-06 57.0 93 35.5
FAN26G3199 Fragaria x ananassa HOM05D002753 ORTHO05D003097 1.5e-06 57.0 80 42.5
Lj5A226G57 Lonicera japonica HOM05D002753 ORTHO05D003097 1.5e-06 57.0 65 44.6
Sc08g0004090 Simmondsia chinensis HOM05D002753 ORTHO05D003097 1.5e-06 57.0 65 43.1
BcaB05g21545 Brassica carinata HOM05D002753 ORTHO05D003097 2.0e-06 56.6 67 46.3
Ciclev10021011m.g Citrus clementina HOM05D002753 ORTHO05D003097 2.0e-06 56.6 66 43.9
Oeu033798.3 Olea europaea HOM05D002753 ORTHO05D003097 2.0e-06 56.6 73 39.7
Cfa020691 Carpinus fangiana HOM05D002753 ORTHO05D003097 2.6e-06 56.2 66 43.9
Ca_18567_v3 Cicer arietinum L. HOM05D002753 ORTHO05D003097 2.6e-06 56.2 61 44.3
Lsat_1_v5_gn_5_111001 Lactuca sativa HOM05D002753 ORTHO05D003097 2.6e-06 56.2 65 38.5
Solyc03g098180.3 Solanum lycopersicum HOM05D002753 ORTHO05D003097 2.6e-06 56.2 66 42.4
Sopen03g028880 Solanum pennellii HOM05D002753 ORTHO05D003097 2.6e-06 56.2 66 42.4
Aa31LG3G17470 Aethionema arabicum HOM05D002753 ORTHO05D003097 3.4e-06 55.8 67 46.3
GSVIVG01029393001 Vitis vinifera HOM05D002753 ORTHO05D003097 3.4e-06 55.8 66 43.9
HanXRQChr10g0291201 Helianthus annuus HOM05D002753 ORTHO05D003097 4.5e-06 55.5 65 41.5
Phvul.004G143000 Phaseolus vulgaris HOM05D002753 ORTHO05D003097 4.5e-06 55.5 67 44.8
Prupe.8G074100 Prunus persica HOM05D002753 ORTHO05D003097 4.5e-06 55.5 95 36.8
Rhsim05G0096700 Rhododendron simsii HOM05D002753 ORTHO05D003097 4.5e-06 55.5 66 42.4
RcHm_v2.0_Chr2g0118131 Rosa chinensis HOM05D002753 ORTHO05D003097 4.5e-06 55.5 52 53.8
TWI81G0128 Tripterygium wilfordii HOM05D002753 ORTHO05D003097 4.5e-06 55.5 66 42.4
EL10Ac1g00940 Beta vulgaris HOM05D002753 ORTHO05D003097 5.8e-06 55.1 66 45.5
MD10G1056400 Malus domestica HOM05D002753 ORTHO05D003097 5.8e-06 55.1 80 40.0
Phvul.004G143200 Phaseolus vulgaris HOM05D002753 ORTHO05D003097 5.8e-06 55.1 61 45.9
PGR083G2063 Punica granatum HOM05D002753 ORTHO05D003097 5.8e-06 55.1 67 44.8
A02p00030 Brassica napus HOM05D002753 ORTHO05D003097 7.6e-06 54.7 94 35.1
FAN19G2857 Fragaria x ananassa HOM05D002753 ORTHO05D003097 7.6e-06 54.7 75 42.7
Rhsim05G0098200 Rhododendron simsii HOM05D000030 ORTHO05D000009 7.6e-06 54.7 65 43.1
MSTRG.16630 Avicennia marina HOM05D002753 ORTHO05D003097 9.9e-06 54.3 64 43.8
BcaC01g01385 Brassica carinata HOM05D002753 ORTHO05D003097 9.9e-06 54.3 62 46.8
C03p91450 Brassica napus HOM05D002753 ORTHO05D003097 9.9e-06 54.3 62 46.8
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 9.9e-06 54.3 62 46.8
Lj5C165G25 Lonicera japonica HOM05D002753 ORTHO05D003097 9.9e-06 54.3 61 42.6
Sabra15G0025300 Salix brachista HOM05D002753 ORTHO05D003097 9.9e-06 54.3 60 43.3
TAR629G1083 Trochodendron aralioides HOM05D002753 ORTHO05D003097 9.9e-06 54.3 65 43.1


User provided reference genes

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