Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.4e-156 556.2 277 100.0
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 3.9e-50 202.6 253 41.5
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 3.8e-45 186.0 245 40.4
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 7.2e-44 181.8 244 39.3
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 2.1e-43 180.3 239 41.0
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 2.7e-43 179.9 243 41.2
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.6e-43 179.5 243 41.6
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 6.1e-43 178.7 249 42.2
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 3.0e-42 176.4 245 41.6
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.9e-42 176.0 243 39.5
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 5.2e-42 175.6 243 41.2
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.1e-41 174.5 244 39.3
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 2.6e-41 173.3 250 38.0
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 7.4e-41 171.8 244 40.2
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 9.7e-41 171.4 245 40.8
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 1.3e-40 171.0 224 44.6
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.3e-40 171.0 245 39.6
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.3e-40 171.0 258 38.4
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.7e-40 170.6 243 39.9
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.7e-40 170.6 243 39.9
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.2e-40 170.2 243 38.7
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 2.8e-40 169.9 245 40.4
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 3.7e-40 169.5 246 40.7
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.8e-40 169.1 245 39.2
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 4.8e-40 169.1 244 38.5
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 6.3e-40 168.7 245 37.1
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 8.2e-40 168.3 244 39.8
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 8.2e-40 168.3 245 38.8
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.1e-39 167.9 247 38.5
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.8e-39 167.2 243 37.9
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 3.1e-39 166.4 243 38.7
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.1e-39 166.4 270 37.0
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 5.3e-39 165.6 244 37.3
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 7.0e-39 165.2 243 37.9
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 9.1e-39 164.9 251 37.5
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 2.0e-38 163.7 242 38.8
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.0e-38 163.7 249 40.2
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 2.0e-38 163.7 254 36.6
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 2.0e-38 163.7 243 37.0
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 2.6e-38 163.3 243 37.0
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 3.5e-38 162.9 243 37.9
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 4.5e-38 162.5 247 37.7
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.5e-38 162.5 247 38.1
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 4.5e-38 162.5 244 36.9
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 5.9e-38 162.2 242 37.6
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 5.9e-38 162.2 247 38.1
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 7.7e-38 161.8 242 39.7
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.3e-37 161.0 242 37.6
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.3e-37 161.0 244 37.7
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 1.7e-37 160.6 251 38.2
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 2.2e-37 160.2 244 36.9
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 2.9e-37 159.8 242 37.2
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 3.8e-37 159.5 242 36.4
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 3.8e-37 159.5 247 39.7
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 3.8e-37 159.5 245 35.9
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 3.8e-37 159.5 243 36.2
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 8.5e-37 158.3 242 34.3
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 8.5e-37 158.3 242 37.2
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 1.1e-36 157.9 244 35.2
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.1e-36 157.9 247 36.8
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 1.9e-36 157.1 246 35.4
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 2.5e-36 156.8 244 36.5
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 2.5e-36 156.8 242 37.2
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 4.2e-36 156.0 244 36.9
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 5.5e-36 155.6 242 38.0
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 5.5e-36 155.6 262 34.7
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 5.5e-36 155.6 244 36.9
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 9.4e-36 154.8 242 35.5
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 9.4e-36 154.8 264 36.7
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 1.2e-35 154.5 207 41.5
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 1.2e-35 154.5 243 37.9
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 1.2e-35 154.5 242 36.4
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.2e-35 154.5 246 37.0
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.2e-35 154.5 200 44.0
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 1.6e-35 154.1 242 35.1
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 2.1e-35 153.7 242 34.3
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 3.6e-35 152.9 247 36.0
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 3.6e-35 152.9 247 35.6
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 3.6e-35 152.9 244 36.9
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 3.6e-35 152.9 242 35.1
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.7e-35 152.5 227 38.3
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.7e-35 152.5 227 38.3
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.0e-34 151.4 239 36.4
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.4e-34 151.0 242 35.5
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.8e-34 150.6 219 37.0
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 1.8e-34 150.6 210 38.1
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 8.8e-34 148.3 247 38.1
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.5e-33 147.5 251 35.5
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.5e-33 147.5 244 34.8
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.5e-33 147.5 242 34.7
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.0e-33 147.1 242 34.7
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 3.3e-33 146.4 242 33.9
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 4.4e-33 146.0 242 35.5
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 2.8e-32 143.3 243 32.1
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 4.8e-32 142.5 199 38.7
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.1e-31 141.4 237 32.5
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.4e-31 141.0 215 38.1
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.8e-31 140.6 227 35.2
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 3.1e-31 139.8 215 39.1
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 4.1e-31 139.4 258 36.0
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 5.3e-31 139.0 216 38.4
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 7.7e-30 135.2 248 33.9
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 2.2e-29 133.7 244 32.8
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 2.2e-29 133.7 244 32.8
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 6.5e-29 132.1 242 31.4
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 1.1e-28 131.3 248 33.1
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 1.1e-28 131.3 242 33.9
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.1e-28 131.3 242 31.4
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 1.9e-28 130.6 243 32.5
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 1.9e-28 130.6 243 31.7
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.5e-28 130.2 218 39.0
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.5e-28 130.2 203 37.9
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.5e-28 130.2 203 37.9
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 4.2e-28 129.4 243 31.3
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.2e-28 129.4 230 33.9
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 5.5e-28 129.0 246 30.9
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 5.5e-28 129.0 243 30.5
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 9.4e-28 128.3 247 33.2
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 1.2e-27 127.9 172 41.9
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 1.2e-27 127.9 243 30.9
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.6e-27 127.5 227 33.9
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 2.1e-27 127.1 243 30.0
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 2.7e-27 126.7 242 32.6
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 6.1e-27 125.6 243 30.5
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.4e-26 124.4 248 33.5
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 1.8e-26 124.0 242 31.4
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 2.3e-26 123.6 215 34.9
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 5.2e-26 122.5 247 32.4
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.2e-25 121.3 193 37.3
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.2e-25 121.3 307 30.9
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 1.5e-25 120.9 215 34.0
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 2.0e-25 120.6 248 31.5
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 7.5e-25 118.6 240 32.9
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 1.3e-24 117.9 225 32.4
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.1e-23 113.2 219 34.7
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 3.8e-21 106.3 266 30.5
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 2.5e-20 103.6 181 36.5
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 8.0e-19 98.6 100 48.0
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 2.2e-16 90.5 221 28.5
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.7e-16 89.7 90 48.9
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 2.7e-14 83.6 177 31.6
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.5e-14 82.8 86 47.7
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 7.7e-14 82.0 86 47.7
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 1.7e-13 80.9 154 35.1
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 5.0e-13 79.3 249 26.9
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 8.9e-10 68.6 148 27.7
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 5.7e-09 65.9 99 34.3
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 8.3e-08 62.0 138 31.2
CBR_g30112 Chara braunii HOM05D004968 ORTHO05D005922 1.1e-07 61.6 77 36.4
MCO14G143 Micromonas commoda HOM05D004968 ORTHO05D005922 1.2e-06 58.2 255 22.7
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 1.6e-06 57.8 105 34.3
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 2.7e-06 57.0 72 44.4


User provided reference genes

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