Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 0.0e+00 2825.4 1466 100.0
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 0.0e+00 1236.9 1408 47.7
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 0.0e+00 1179.1 1412 45.9
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 0.0e+00 1173.3 1412 46.7
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 0.0e+00 1167.1 1432 46.9
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 0.0e+00 1141.7 1439 45.6
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 0.0e+00 1110.5 1423 43.6
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 0.0e+00 1109.4 1423 44.5
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 0.0e+00 1106.3 1409 45.0
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 0.0e+00 1099.7 1420 44.7
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 0.0e+00 1097.0 1425 44.1
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 0.0e+00 1095.1 1407 43.8
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 0.0e+00 1091.3 1432 43.5
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 0.0e+00 1089.3 1436 43.5
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 0.0e+00 1088.6 1439 43.6
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 0.0e+00 1087.8 1427 43.6
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 0.0e+00 1081.6 1431 42.5
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 0.0e+00 1078.9 1413 43.5
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 0.0e+00 1075.1 1483 43.6
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 1.0e-311 1073.9 1408 42.7
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 2.0e-311 1073.2 1441 42.1
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 9.9e-310 1067.4 1412 43.6
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 8.4e-309 1064.3 1431 41.9
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 1.9e-308 1063.1 1429 42.4
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 1.9e-308 1063.1 1410 43.6
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.7e-306 1056.6 1426 42.8
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.3e-306 1056.2 1432 42.0
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 5.1e-306 1055.0 1409 43.2
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 8.7e-306 1054.3 1409 43.0
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 1.9e-305 1053.1 1435 42.2
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.5e-305 1052.7 1409 43.1
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 4.3e-305 1052.0 1413 42.1
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 8.1e-304 1047.7 1435 41.9
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 8.1e-304 1047.7 1424 42.7
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.1e-303 1047.3 1423 42.7
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 1.4e-303 1047.0 1406 43.0
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 1.8e-303 1046.6 1418 43.0
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 2.4e-303 1046.2 1422 41.6
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 1.2e-302 1043.9 1427 41.8
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 7.6e-302 1041.2 1424 42.3
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 4.9e-301 1038.5 1420 42.3
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 1.1e-300 1037.3 1419 42.6
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 1.1e-300 1037.3 1424 43.2
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 1.4e-300 1036.9 1409 42.8
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 3.2e-300 1035.8 1419 42.6
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 9.3e-300 1034.2 1413 42.0
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 4.6e-299 1031.9 1407 42.0
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 4.6e-299 1031.9 1419 42.1
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 6.0e-299 1031.6 1420 41.5
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 5.6e-297 1025.0 1414 42.4
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.4e-295 1020.4 1363 43.7
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 5.3e-295 1018.5 1346 43.3
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 9.0e-295 1017.7 1410 41.6
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 1.5e-294 1016.9 1417 42.1
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 1.7e-293 1013.4 1415 42.5
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 3.8e-293 1012.3 1412 41.9
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 7.1e-292 1008.1 1427 42.4
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 4.6e-291 1005.4 1414 41.0
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 1.5e-289 1000.3 1339 43.3
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 1.9e-289 1000.0 1430 41.1
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 1.1e-287 994.2 1416 42.3
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 3.1e-287 992.6 1421 40.8
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 6.9e-287 991.5 1406 40.9
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 1.2e-286 990.7 1417 41.7
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 1.4e-284 983.8 1489 39.6
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 1.4e-284 983.8 1408 41.2
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 1.2e-283 980.7 1424 40.1
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 3.5e-283 979.2 1410 39.9
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 3.0e-282 976.1 1410 39.7
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 2.2e-280 969.9 1550 38.6
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 6.3e-280 968.4 1400 41.5
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 2.4e-279 966.5 1461 39.4
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 2.4e-279 966.5 1505 40.8
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 7.7e-278 961.4 1422 39.2
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 3.8e-277 959.1 1555 38.5
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 3.8e-277 959.1 1420 40.6
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 9.7e-273 944.5 1333 41.5
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 1.7e-269 933.7 1424 40.7
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 3.9e-266 922.5 1417 39.4
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 2.0e-265 920.2 1448 38.3
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 2.2e-261 906.7 1455 38.6
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 1.1e-260 904.4 1178 44.6
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 1.6e-259 900.6 1415 38.4
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 2.1e-259 900.2 1414 39.2
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 8.0e-259 898.3 1212 43.7
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 2.3e-258 896.7 1371 39.7
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 2.9e-253 879.8 1441 38.2
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 3.8e-253 879.4 1465 37.3
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 6.8e-250 868.6 1424 38.0
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 1.7e-248 864.0 1446 36.8
HPP92_007263 Vanilla planifolia HOM05D003115 ORTHO05D003595 3.1e-247 859.8 1111 45.2
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 1.5e-244 850.9 1027 45.7
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 7.2e-244 848.6 1416 37.4
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 9.4e-244 848.2 1031 45.8
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 1.2e-238 831.2 1401 37.4
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 5.2e-234 815.8 1421 36.9
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 9.8e-233 811.6 1450 36.1
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 2.7e-230 803.5 1421 36.6
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 2.1e-227 793.9 1445 36.1
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 2.7e-222 776.9 1461 35.4
CDE07G0216 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 7.8e-222 775.4 978 43.4
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 7.8e-222 775.4 1096 40.5
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 7.8e-222 775.4 1096 40.5
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 2.9e-216 756.9 1432 35.0
SEGI_02895 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 1.4e-215 754.6 390 99.2
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 1.4e-210 738.0 1467 35.4
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 2.3e-210 737.3 1400 35.6
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 5.8e-209 732.6 1423 35.6
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 1.3e-208 731.5 1480 33.6
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 3.2e-207 726.9 1421 35.3
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 1.7e-205 721.1 1480 33.6
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 6.0e-198 696.0 1422 33.7
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 9.0e-186 655.6 1423 32.7
BolC5t31099H Brassica oleracea HOM05D003115 ORTHO05D003595 5.1e-149 533.5 1075 34.6
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 1.5e-148 531.9 1311 30.9
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 6.5e-144 516.5 831 39.8
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 3.6e-142 510.8 734 41.3
BcaC05g26357 Brassica carinata HOM05D003115 ORTHO05D003595 8.9e-117 426.4 898 34.2
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 1.8e-114 418.7 531 42.6
Cc00_g24200 Coffea canephora HOM05D003115 ORTHO05D003595 6.2e-110 403.7 595 40.2
Hund19003 Selenicereus undatus HOM05D003115 ORTHO05D003595 3.4e-100 371.3 378 49.2
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 2.5e-95 355.1 1698 23.0
PRCOL_00001334 Prasinoderma coloniale HOM05D003115 ORTHO05D003595 5.6e-95 354.0 1522 24.6
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 1.3e-88 332.8 1621 22.8
Cc00_g09590 Coffea canephora HOM05D003115 ORTHO05D003595 1.1e-79 303.1 649 33.7
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 5.1e-64 251.1 400 36.8
HPP92_007262 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.7e-51 209.5 307 37.1
SEGI_28450 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 2.3e-48 199.1 110 92.7
BraA09t42180Z Brassica rapa HOM05D003115 ORTHO05D003595 1.8e-45 189.5 789 24.0
Psat0s3058g0040 Pisum sativum HOM05D003115 ORTHO05D003595 2.4e-45 189.1 339 32.4
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.1e-45 188.3 294 38.8
Rhsim07G0171100 Rhododendron simsii HOM05D003115 ORTHO05D003595 1.2e-41 176.8 1142 22.9
CDE07G1385 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 5.3e-37 161.4 241 41.5
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.5e-34 152.5 386 31.3
BraA09t42186Z Brassica rapa HOM05D003115 ORTHO05D003595 3.9e-32 145.2 682 23.9
C05p23810 Brassica napus HOM05D003115 ORTHO05D003595 5.2e-32 144.8 602 25.9
Oeu049761.1 Olea europaea HOM05D003115 ORTHO05D003595 3.1e-29 135.6 288 32.3
PGSC0003DMG400007741 Solanum tuberosum HOM05D003115 ORTHO05D003595 3.1e-29 135.6 260 34.2
Cc00_g09610 Coffea canephora HOM05D003115 ORTHO05D003595 5.3e-29 134.8 268 32.8
Psat4g000360 Pisum sativum HOM05D003115 ORTHO05D003595 7.0e-29 134.4 246 30.1
Rhsim07G0171500 Rhododendron simsii HOM05D003115 ORTHO05D003595 4.5e-28 131.7 729 24.7
Atru.chr4.1598 Acer truncatum HOM05D003115 ORTHO05D003595 1.6e-25 123.2 216 33.3
Psat3g191280 Pisum sativum HOM05D003115 ORTHO05D003595 6.3e-22 111.3 157 45.9
Rhsim06G0083800 Rhododendron simsii HOM05D003115 ORTHO05D003595 4.2e-18 98.6 225 33.3
Cc00_g09570 Coffea canephora HOM05D003115 ORTHO05D003595 9.4e-18 97.4 106 47.2
Cc00_g27550 Coffea canephora HOM05D003115 ORTHO05D003595 1.2e-17 97.1 106 47.2
C05p23800 Brassica napus HOM05D003115 ORTHO05D003595 9.8e-15 87.4 326 25.2
Actinidia10072 Actinidia chinensis HOM05D003115 ORTHO05D003595 1.7e-14 86.7 118 38.1
PGSC0003DMG400026434 Solanum tuberosum HOM05D003115 ORTHO05D003595 2.2e-14 86.3 222 29.7
Haze_25344 Corylus avellana HOM05D003115 ORTHO05D003595 4.1e-13 82.0 86 52.3
BcaC05g26355 Brassica carinata HOM05D003115 ORTHO05D003595 7.0e-13 81.3 126 34.9
Haze_13685 Corylus avellana HOM05D003115 ORTHO05D003595 2.0e-12 79.7 81 53.1
Haze_25245 Corylus avellana HOM05D003115 ORTHO05D003595 5.9e-12 78.2 83 51.8
Haze_18491 Corylus avellana HOM05D003115 ORTHO05D003595 1.2e-09 70.5 99 43.4
PGSC0003DMG400007742 Solanum tuberosum HOM05D000005 ORTHO05D003595 6.8e-08 64.7 79 43.0
CARHR255300 Cardamine hirsuta HOM05D003115 ORTHO05D003595 4.4e-07 62.0 91 37.4
CBR_g75372 Chara braunii HOM05D003115 ORTHO05D003595 4.4e-07 62.0 82 43.9
RcHm_v2.0_Chr2g0136151 Rosa chinensis HOM05D003115 ORTHO05D003595 9.8e-07 60.8 112 36.6
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 6.3e-06 58.2 50 60.0


User provided reference genes

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