Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 1.4e-275 952.2 456 100.0
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 5.5e-41 172.9 409 29.3
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 6.1e-40 169.5 399 30.3
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 2.0e-38 164.5 397 31.0
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 7.4e-38 162.5 395 28.6
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 2.2e-37 161.0 400 30.5
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 4.5e-35 153.3 138 47.1
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 1.0e-34 152.1 382 29.3
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 1.7e-34 151.4 396 30.6
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 2.9e-34 150.6 163 41.7
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 3.8e-34 150.2 394 28.9
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 6.5e-34 149.4 199 37.7
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 2.5e-33 147.5 136 46.3
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 3.2e-33 147.1 126 51.6
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 5.5e-33 146.4 426 27.2
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 7.2e-33 146.0 398 29.4
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 7.2e-33 146.0 157 43.9
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 9.4e-33 145.6 164 42.7
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 9.4e-33 145.6 164 42.7
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 2.7e-32 144.1 424 26.9
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 2.7e-32 144.1 136 47.1
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.7e-32 144.1 396 29.3
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 2.7e-32 144.1 136 44.9
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 3.6e-32 143.7 149 45.6
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 1.4e-31 141.7 139 47.5
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 1.4e-31 141.7 141 44.0
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.8e-31 141.4 400 26.2
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 1.8e-31 141.4 396 26.0
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 3.0e-31 140.6 131 48.9
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 5.2e-31 139.8 403 27.3
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 8.8e-31 139.0 127 45.7
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 8.8e-31 139.0 211 34.1
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 8.8e-31 139.0 139 42.4
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.1e-30 138.7 398 26.9
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.1e-30 138.7 143 43.4
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.5e-30 138.3 418 27.5
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.5e-30 138.3 128 48.4
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.6e-30 137.5 172 39.0
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 2.6e-30 137.5 119 47.9
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 2.6e-30 137.5 125 50.4
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 3.3e-30 137.1 138 44.9
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 5.7e-30 136.3 151 43.0
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 7.4e-30 136.0 137 43.1
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 7.4e-30 136.0 125 45.6
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 9.7e-30 135.6 174 37.9
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 9.7e-30 135.6 395 26.1
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 9.7e-30 135.6 133 44.4
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 1.7e-29 134.8 153 41.2
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 2.2e-29 134.4 401 27.2
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.2e-29 134.4 151 41.7
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 2.2e-29 134.4 389 26.5
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 2.8e-29 134.0 379 27.2
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 2.8e-29 134.0 410 26.6
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 4.8e-29 133.3 164 40.2
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 4.8e-29 133.3 150 40.7
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 6.3e-29 132.9 399 27.3
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 6.3e-29 132.9 142 47.2
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 1.4e-28 131.7 398 24.9
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 3.1e-28 130.6 139 43.2
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 3.1e-28 130.6 144 41.0
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 5.3e-28 129.8 132 48.5
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 7.0e-28 129.4 139 43.9
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 7.0e-28 129.4 391 27.1
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 9.1e-28 129.0 128 44.5
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.6e-27 128.3 159 36.5
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 2.0e-27 127.9 383 27.2
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.0e-27 127.9 116 48.3
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.6e-27 127.5 159 35.2
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 2.6e-27 127.5 127 43.3
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 1.3e-26 125.2 138 41.3
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.3e-26 125.2 137 40.9
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 1.3e-26 125.2 159 35.2
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 1.7e-26 124.8 102 52.0
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 2.2e-26 124.4 137 44.5
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.2e-26 124.4 105 50.5
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 2.9e-26 124.0 102 52.0
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 3.8e-26 123.6 129 43.4
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 3.8e-26 123.6 129 43.4
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 3.8e-26 123.6 133 39.1
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 5.0e-26 123.2 138 39.1
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 5.0e-26 123.2 130 43.1
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 6.5e-26 122.9 88 56.8
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 1.9e-25 121.3 129 40.3
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 2.5e-25 120.9 139 37.4
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 2.5e-25 120.9 129 45.0
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 4.2e-25 120.2 133 39.1
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 4.2e-25 120.2 138 37.0
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 4.2e-25 120.2 138 37.0
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 5.5e-25 119.8 133 40.6
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 7.2e-25 119.4 128 38.3
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 7.2e-25 119.4 170 34.1
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 9.4e-25 119.0 135 40.0
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 1.6e-24 118.2 124 38.7
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.6e-24 118.2 186 34.4
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 2.1e-24 117.9 345 25.2
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 2.1e-24 117.9 122 41.0
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.1e-24 117.9 131 40.5
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.1e-24 117.9 127 39.4
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 2.1e-24 117.9 152 37.5
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 4.7e-24 116.7 117 45.3
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 6.1e-24 116.3 129 38.8
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 8.0e-24 115.9 411 27.3
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.4e-23 115.2 398 26.6
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 6.7e-23 112.8 121 44.6
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 8.8e-23 112.5 131 38.2
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 1.2e-22 112.1 131 38.2
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 4.4e-22 110.2 130 39.2
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.4e-22 110.2 90 44.4
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 9.7e-22 109.0 171 34.5
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 9.7e-22 109.0 94 43.6
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 1.7e-21 108.2 123 39.8
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.7e-21 108.2 153 32.7
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 2.8e-21 107.5 133 36.1
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 3.7e-21 107.1 125 40.0
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 3.7e-21 107.1 125 40.0
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 3.7e-21 107.1 125 40.0
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 6.3e-21 106.3 125 40.0
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 6.3e-21 106.3 125 40.0
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 1.4e-20 105.1 131 38.2
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.8e-20 104.8 123 37.4
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.8e-20 104.8 132 41.7
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 2.4e-20 104.4 172 36.0
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 3.1e-20 104.0 131 38.9
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 3.1e-20 104.0 131 38.9
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 3.1e-20 104.0 124 37.1
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 5.3e-20 103.2 123 38.2
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 9.1e-20 102.4 119 37.8
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 1.2e-19 102.1 134 40.3
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-19 102.1 134 38.8
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-19 102.1 149 37.6
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.0e-19 101.3 113 39.8
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 2.7e-19 100.9 121 41.3
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 2.7e-19 100.9 121 41.3
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 2.7e-19 100.9 181 32.6
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 5.9e-19 99.8 121 37.2
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 1.7e-18 98.2 123 38.2
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.7e-18 98.2 117 37.6
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.8e-18 97.1 90 45.6
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 8.5e-18 95.9 65 58.5
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 8.5e-18 95.9 85 47.1
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 1.1e-17 95.5 97 40.2
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 1.9e-17 94.7 121 37.2
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.9e-17 94.7 123 35.0
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.5e-17 94.4 138 35.5
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 1.6e-16 91.7 81 44.4
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 2.1e-16 91.3 81 45.7
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 2.7e-16 90.9 134 32.8
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 3.6e-16 90.5 127 36.2
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 6.8e-15 86.3 121 38.0
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.4e-12 78.6 67 47.8
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 3.1e-12 77.4 105 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.6e-11 75.1 126 30.2
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 5.5e-09 66.6 117 35.9
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 3.6e-08 63.9 118 29.7
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 8.0e-08 62.8 101 28.7
SEGI_35165 Sequoiadendron giganteum HOM05D000623 ORTHO05D006801 1.4e-07 62.0 47 61.7
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-06 58.9 144 22.9
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 1.2e-06 58.9 144 22.9
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 5.7e-06 56.6 53 47.2


User provided reference genes

Program Settings