Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.8e-123 446.0 250 100.0
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 3.8e-84 315.5 249 73.5
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 3.8e-84 315.5 249 72.3
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 8.4e-84 314.3 249 73.1
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.9e-83 313.2 247 68.4
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.4e-83 312.8 248 73.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 2.4e-83 312.8 249 71.9
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 3.2e-83 312.4 250 68.8
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 4.2e-83 312.0 252 71.4
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 4.2e-83 312.0 247 71.7
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 5.4e-83 311.6 248 72.6
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 9.3e-83 310.8 248 69.0
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.2e-82 310.5 248 71.0
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.2e-82 310.5 249 69.1
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 3.5e-82 308.9 250 69.6
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.0e-81 307.4 247 70.4
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.7e-81 306.6 250 70.8
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 3.0e-81 305.8 253 68.4
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 3.9e-81 305.4 248 68.1
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 5.1e-81 305.1 250 69.2
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 6.6e-81 304.7 249 68.3
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.5e-80 303.5 250 67.6
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.5e-80 303.5 249 68.3
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 3.3e-80 302.4 249 68.7
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.3e-80 302.0 248 67.3
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 7.3e-80 301.2 248 67.7
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 7.3e-80 301.2 247 68.4
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 2.8e-79 299.3 242 71.9
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 3.6e-79 298.9 252 65.9
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 4.8e-79 298.5 209 73.2
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 4.8e-79 298.5 241 69.7
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 8.1e-79 297.7 249 69.1
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.8e-78 296.6 245 68.6
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 2.4e-78 296.2 248 66.9
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 3.1e-78 295.8 248 67.3
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 5.3e-78 295.0 249 68.7
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 6.9e-78 294.7 242 68.2
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 9.0e-78 294.3 249 70.3
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.5e-77 293.5 248 64.1
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.0e-77 293.1 249 69.1
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 2.6e-77 292.7 248 68.5
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 3.4e-77 292.4 248 68.5
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 4.5e-77 292.0 250 67.2
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 7.6e-77 291.2 247 64.0
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 7.6e-77 291.2 248 66.1
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.3e-76 290.4 252 66.3
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.7e-76 290.0 248 69.0
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 2.2e-76 289.7 246 68.7
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 2.2e-76 289.7 249 66.3
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 2.9e-76 289.3 250 68.4
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 2.9e-76 289.3 249 67.1
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 3.8e-76 288.9 248 66.1
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 6.4e-76 288.1 245 68.2
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 8.4e-76 287.7 248 66.1
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 8.4e-76 287.7 249 63.9
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 8.4e-76 287.7 249 65.5
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.4e-75 287.0 248 66.9
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.9e-75 286.6 241 64.7
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 4.2e-75 285.4 215 66.5
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 4.2e-75 285.4 248 66.1
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 4.2e-75 285.4 248 68.1
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 7.1e-75 284.6 249 67.9
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 7.1e-75 284.6 248 64.1
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 9.3e-75 284.3 241 67.2
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.2e-74 283.9 247 66.4
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.6e-74 283.5 259 63.3
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 2.1e-74 283.1 250 68.4
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.7e-74 282.7 247 68.0
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 7.9e-74 281.2 214 65.4
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.3e-73 280.4 251 66.5
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.3e-73 280.4 244 66.8
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 1.8e-73 280.0 213 65.7
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 2.3e-73 279.6 245 64.5
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 3.9e-73 278.9 208 65.9
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 6.7e-73 278.1 249 65.1
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 8.7e-73 277.7 254 65.7
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.1e-72 277.3 248 62.9
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.1e-72 277.3 244 66.8
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.9e-72 276.6 243 64.6
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.5e-72 276.2 244 66.4
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 4.3e-72 275.4 238 66.8
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 7.4e-72 274.6 251 64.1
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 7.4e-72 274.6 237 65.8
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 2.8e-71 272.7 243 63.4
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 4.8e-71 271.9 251 65.7
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.4e-70 270.4 247 65.2
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.8e-70 270.0 251 65.3
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 2.6e-69 266.2 236 64.4
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 7.6e-69 264.6 244 63.5
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 9.9e-69 264.2 247 63.6
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 9.9e-69 264.2 194 66.0
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.7e-68 263.5 236 63.6
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.7e-68 263.5 247 62.8
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 2.2e-68 263.1 235 63.8
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 6.4e-68 261.5 261 60.5
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 2.7e-66 256.1 268 58.6
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.7e-66 256.1 211 61.1
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 3.5e-66 255.8 242 62.0
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 4.6e-66 255.4 345 47.8
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 6.0e-66 255.0 242 62.0
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.3e-65 253.8 247 62.8
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 1.8e-65 253.4 246 63.0
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.3e-65 253.1 292 56.8
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 2.3e-65 253.1 242 61.6
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 5.1e-65 251.9 247 62.3
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.1e-64 250.8 224 58.0
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.1e-64 250.8 250 60.4
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.1e-63 246.5 244 59.8
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 2.2e-60 236.5 214 60.7
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 1.1e-59 234.2 247 56.3
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.1e-59 234.2 282 52.5
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 2.1e-58 229.9 241 58.9
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 2.7e-58 229.6 245 58.4
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.1e-57 225.3 194 58.8
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 5.7e-56 221.9 245 58.4
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 3.1e-54 216.1 177 60.5
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 5.9e-53 211.8 248 52.8
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 7.6e-53 211.5 247 56.7
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.1e-51 207.6 223 51.1
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 5.5e-51 205.3 209 56.0
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.6e-50 203.8 147 68.7
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.1e-49 198.7 242 50.8
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.5e-45 187.2 215 49.8
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 2.9e-44 183.0 136 67.6
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.8e-41 173.7 130 68.5
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 5.7e-40 168.7 164 62.2
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 6.3e-39 165.2 124 65.3
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 5.5e-35 152.1 255 41.2
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 3.6e-34 149.4 144 68.1
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 6.1e-34 148.7 216 39.8
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 6.1e-34 148.7 133 58.6
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 3.7e-31 139.4 225 37.3
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.1e-30 137.9 158 46.2
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.6e-29 133.3 195 52.3
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 2.3e-25 120.2 213 36.2
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 1.2e-24 117.9 115 72.2
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.0e-24 117.1 338 37.6
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.1e-22 109.8 107 62.6
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 4.5e-21 105.9 92 55.4
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.7e-20 104.0 72 70.8
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.1e-19 101.3 61 75.4
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 7.5e-16 88.6 105 43.8
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 6.3e-15 85.5 77 51.9
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 3.2e-11 73.2 192 32.3
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 5.7e-08 62.4 160 33.1
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.4e-06 57.8 77 55.8
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.4e-06 57.8 63 49.2


User provided reference genes

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