Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04270 Sequoiadendron giganteum HOM05D004515 ORTHO05D006013 4.2e-65 251.1 122 100.0
Gohir.A06G163900 Gossypium hirsutum HOM05D004515 ORTHO05D006013 1.5e-25 119.8 69 78.3
Gorai.010G198300 Gossypium raimondii HOM05D004515 ORTHO05D006013 1.5e-25 119.8 69 78.3
Gohir.D06G169400 Gossypium hirsutum HOM05D004515 ORTHO05D006013 9.6e-25 117.1 69 76.8
Thecc.10G018200 Theobroma cacao HOM05D004515 ORTHO05D006013 1.6e-24 116.3 69 76.8
COL.COLO4_25711 Corchorus olitorius HOM05D004515 ORTHO05D006013 2.1e-24 115.9 69 76.8
Duzib128G1522 Durio zibethinus HOM05D004515 ORTHO05D006013 2.1e-24 115.9 69 78.3
Prupe.2G249400 Prunus persica HOM05D004515 ORTHO05D006013 2.8e-24 115.5 69 73.9
ATR0618G041 Amborella trichopoda HOM05D004515 ORTHO05D006013 3.6e-24 115.2 69 73.9
THA.LOC104810499 Tarenaya hassleriana HOM05D004515 ORTHO05D006013 3.6e-24 115.2 69 73.9
COL.COLO4_25712 Corchorus olitorius HOM05D004515 ORTHO05D006013 6.2e-24 114.4 69 75.4
Migut.F01384 Erythranthe guttata HOM05D004515 ORTHO05D006013 8.1e-24 114.0 69 75.4
TAR633G2451 Trochodendron aralioides HOM05D004515 ORTHO05D006013 8.1e-24 114.0 69 73.9
Duzib114G1023 Durio zibethinus HOM05D004515 ORTHO05D006013 1.1e-23 113.6 69 75.4
Hma1.2p1_0703F.1_g206460 Hydrangea macrophylla HOM05D004515 ORTHO05D006013 1.1e-23 113.6 69 73.9
MD07G1221400 Malus domestica HOM05D004515 ORTHO05D006013 1.1e-23 113.6 69 72.5
HPP92_012630 Vanilla planifolia HOM05D004515 ORTHO05D006013 1.1e-23 113.6 69 72.5
HPP92_028026 Vanilla planifolia HOM05D004515 ORTHO05D006013 1.1e-23 113.6 69 72.5
Lj6g0019651 Lotus japonicus HOM05D004515 ORTHO05D006013 1.4e-23 113.2 70 71.4
CARHR135050 Cardamine hirsuta HOM05D004515 ORTHO05D006013 1.8e-23 112.8 69 72.5
Nitab4.5_0001171g0050 Nicotiana tabacum HOM05D004515 ORTHO05D006013 1.8e-23 112.8 69 72.5
Nitab4.5_0003999g0010 Nicotiana tabacum HOM05D004515 ORTHO05D006013 1.8e-23 112.8 69 72.5
SalBow6G5289 Salvia bowleyana HOM05D004515 ORTHO05D006013 1.8e-23 112.8 70 71.4
Atru.chr12.26 Acer truncatum HOM05D004515 ORTHO05D006013 2.4e-23 112.5 69 72.5
MD01G1152400 Malus domestica HOM05D004515 ORTHO05D006013 2.4e-23 112.5 69 72.5
Oeu005845.1 Olea europaea HOM05D004515 ORTHO05D006013 2.4e-23 112.5 69 72.5
Aa31LG5G19520 Aethionema arabicum HOM05D004515 ORTHO05D006013 3.1e-23 112.1 69 71.0
CSS0001103 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006013 3.1e-23 112.1 69 71.0
Cfa001324 Carpinus fangiana HOM05D004515 ORTHO05D006013 3.1e-23 112.1 69 73.9
Haze_17221 Corylus avellana HOM05D004515 ORTHO05D006013 3.1e-23 112.1 69 73.9
Dinv10627 Davidia involucrata HOM05D004515 ORTHO05D006013 3.1e-23 112.1 69 72.5
Nn2g11487 Nelumbo nucifera HOM05D004515 ORTHO05D006013 3.1e-23 112.1 69 73.9
Os03g0698350 Oryza sativa ssp. japonica HOM05D004515 ORTHO05D006013 3.1e-23 112.1 74 70.3
CiPaw.02G192100 Carya illinoinensis HOM05D004515 ORTHO05D006013 4.0e-23 111.7 69 73.9
Ca_15120_v3 Cicer arietinum L. HOM05D004515 ORTHO05D006013 4.0e-23 111.7 69 71.0
Thhalv10016489m.g Eutrema salsugineum HOM05D004515 ORTHO05D006013 4.0e-23 111.7 69 72.5
Sp4g22390 Schrenkiella parvula HOM05D004515 ORTHO05D006013 4.0e-23 111.7 69 72.5
TWI09G1318 Tripterygium wilfordii HOM05D004515 ORTHO05D006013 4.0e-23 111.7 67 71.6
Cpa.g.sc19.178 Carica papaya HOM05D004515 ORTHO05D006013 5.3e-23 111.3 69 73.9
Rhsim03G0143400 Rhododendron simsii HOM05D004515 ORTHO05D006013 5.3e-23 111.3 69 71.0
unitig_747.g21413 Utricularia gibba HOM05D004515 ORTHO05D006013 5.3e-23 111.3 70 71.4
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 6.9e-23 110.9 69 72.5
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 6.9e-23 110.9 69 72.5
CSS0009607 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006013 6.9e-23 110.9 69 71.0
Ciclev10031189m.g Citrus clementina HOM05D004515 ORTHO05D006013 6.9e-23 110.9 67 76.1
Oeu025167.1 Olea europaea HOM05D004515 ORTHO05D006013 9.0e-23 110.5 69 72.5
ECA238G3319 Erigeron canadensis HOM05D004515 ORTHO05D006013 1.2e-22 110.2 69 71.0
Glyma.18G028000 Glycine max HOM05D004515 ORTHO05D006013 1.5e-22 109.8 69 71.0
vmacro06973 Vaccinium macrocarpon HOM05D004515 ORTHO05D006013 1.5e-22 109.8 69 69.6
Sed0023990 Sechium edule HOM05D004515 ORTHO05D006013 2.0e-22 109.4 70 70.0
A03p22540 Brassica napus HOM05D004515 ORTHO05D006013 2.6e-22 109.0 69 71.0
C03p26690 Brassica napus HOM05D004515 ORTHO05D006013 2.6e-22 109.0 69 71.0
FvH4_7g24400 Fragaria vesca HOM05D004515 ORTHO05D006013 2.6e-22 109.0 69 69.6
FAN01G2906 Fragaria x ananassa HOM05D004515 ORTHO05D006013 2.6e-22 109.0 69 69.6
FAN06G0292 Fragaria x ananassa HOM05D004515 ORTHO05D006013 2.6e-22 109.0 70 68.6
FAN06G4539 Fragaria x ananassa HOM05D004515 ORTHO05D006013 2.6e-22 109.0 69 69.6
FAN10G4299 Fragaria x ananassa HOM05D000946 ORTHO05D006013 2.6e-22 109.0 69 69.6
HanXRQChr14g0459811 Helianthus annuus HOM05D004515 ORTHO05D006013 2.6e-22 109.0 70 68.6
Lalb_Chr08g0231721 Lupinus albus HOM05D004515 ORTHO05D006013 2.6e-22 109.0 69 69.6
Medtr3g070410 Medicago truncatula HOM05D004515 ORTHO05D006013 2.6e-22 109.0 69 69.6
A05p06380 Brassica napus HOM05D004515 ORTHO05D006013 3.4e-22 108.6 69 71.0
BraA05t19606Z Brassica rapa HOM05D004515 ORTHO05D006013 3.4e-22 108.6 69 71.0
Eucgr.J00216 Eucalyptus grandis HOM05D004515 ORTHO05D006013 3.4e-22 108.6 69 73.9
PSO339G0388 Papaver somniferum HOM05D004515 ORTHO05D006013 3.4e-22 108.6 69 72.5
PSO801G0853 Papaver somniferum HOM05D004515 ORTHO05D006013 3.4e-22 108.6 69 72.5
Peaxi162Scf00825g00122 Petunia axillaris HOM05D004515 ORTHO05D006013 3.4e-22 108.6 69 69.6
TPR.G16214 Trifolium pratense HOM05D004515 ORTHO05D006013 3.4e-22 108.6 69 68.1
BcaB02g09054 Brassica carinata HOM05D004515 ORTHO05D006013 4.4e-22 108.2 69 69.6
CsaV3_6G001820 Cucumis sativus L. HOM05D004515 ORTHO05D006013 4.4e-22 108.2 115 49.6
AL4G37730 Arabidopsis lyrata HOM05D004515 ORTHO05D006013 5.8e-22 107.8 69 69.6
arahy.Tifrunner.gnm1.ann1.RFU602 Arachis hypogaea HOM05D004515 ORTHO05D006013 5.8e-22 107.8 69 71.0
CDE04G3525 Ceratophyllum demersum HOM05D004515 ORTHO05D006013 5.8e-22 107.8 71 70.4
ClCG11G006170 Citrullus lanatus HOM05D004515 ORTHO05D006013 5.8e-22 107.8 70 67.1
MELO3C008295.2 Cucumis melo HOM05D004515 ORTHO05D006013 5.8e-22 107.8 70 67.1
Glyma.11G229300 Glycine max HOM05D004515 ORTHO05D006013 5.8e-22 107.8 69 69.6
Carub.0004s2225 Capsella rubella HOM05D004515 ORTHO05D006013 7.6e-22 107.5 69 69.6
DCAR_024830 Daucus carota HOM05D004515 ORTHO05D006013 7.6e-22 107.5 69 71.0
Psat5g126840 Pisum sativum HOM05D004515 ORTHO05D006013 7.6e-22 107.5 69 68.1
QL08p063123 Quercus lobata HOM05D004515 ORTHO05D006013 7.6e-22 107.5 69 71.0
Manes.10G013300 Manihot esculenta HOM05D004515 ORTHO05D006013 9.9e-22 107.1 69 69.6
Lsat_1_v5_gn_5_153581 Lactuca sativa HOM05D004515 ORTHO05D006013 1.3e-21 106.7 69 68.1
Manes.07G128900 Manihot esculenta HOM05D004515 ORTHO05D006013 1.3e-21 106.7 69 69.6
Solyc06g051730.4 Solanum lycopersicum HOM05D004515 ORTHO05D006013 1.3e-21 106.7 69 69.6
Sopen06g017680 Solanum pennellii HOM05D004515 ORTHO05D006013 1.3e-21 106.7 69 69.6
VMungo1383G2049 Vigna mungo HOM05D004515 ORTHO05D006013 1.3e-21 106.7 69 68.1
Phvul.001G242500 Phaseolus vulgaris HOM05D004515 ORTHO05D006013 1.7e-21 106.3 69 68.1
arahy.Tifrunner.gnm1.ann1.61SRII Arachis hypogaea HOM05D004515 ORTHO05D006013 2.2e-21 105.9 69 69.6
Sc11g0005040 Simmondsia chinensis HOM05D004515 ORTHO05D006013 2.2e-21 105.9 69 68.1
GSVIVG01032832001 Vitis vinifera HOM05D004515 ORTHO05D006013 2.2e-21 105.9 69 68.1
Actinidia29699 Actinidia chinensis HOM05D004515 ORTHO05D006013 3.8e-21 105.1 69 66.7
CDE02G2203 Ceratophyllum demersum HOM05D004515 ORTHO05D006013 3.8e-21 105.1 69 71.0
RcHm_v2.0_Chr1g0370101 Rosa chinensis HOM05D004515 ORTHO05D006013 6.4e-21 104.4 69 66.7
AT2G40090 Arabidopsis thaliana HOM05D004515 ORTHO05D006013 1.1e-20 103.6 69 68.1
Potri.008G067900 Populus trichocarpa HOM05D004515 ORTHO05D006013 1.1e-20 103.6 69 63.8
Ah.16g103480 Amaranthus hybridus HOM05D004515 ORTHO05D006013 1.4e-20 103.2 69 65.2
AUR62012243 Chenopodium quinoa HOM05D004515 ORTHO05D006013 1.4e-20 103.2 69 65.2
AUR62022874 Chenopodium quinoa HOM05D004515 ORTHO05D006013 1.4e-20 103.2 69 65.2
PGR044G1178 Punica granatum HOM05D004515 ORTHO05D006013 1.4e-20 103.2 69 69.6
Sabra08G0049800 Salix brachista HOM05D004515 ORTHO05D006013 1.4e-20 103.2 114 49.1
Aqoxy2G00906 Aquilegia oxysepala HOM05D004515 ORTHO05D006013 1.9e-20 102.8 69 66.7
EL10Ac2g04822 Beta vulgaris HOM05D004515 ORTHO05D006013 2.4e-20 102.4 69 65.2
CBR_g58691 Chara braunii HOM05D004515 ORTHO05D006013 3.2e-20 102.1 70 64.3
Cc02_g06590 Coffea canephora HOM05D004515 ORTHO05D006013 3.2e-20 102.1 70 67.1
SGA_v2.0_scaffold44G16693 Striga asiatica HOM05D004515 ORTHO05D006013 4.2e-20 101.7 69 63.8
Hund13856 Selenicereus undatus HOM05D004515 ORTHO05D006013 5.4e-20 101.3 69 66.7
Hund13854 Selenicereus undatus HOM05D004515 ORTHO05D006013 9.3e-20 100.5 69 65.2
Lj1C955G2 Lonicera japonica HOM05D004515 ORTHO05D006013 1.6e-19 99.8 70 61.4
Duzib068G0254 Durio zibethinus HOM05D004515 ORTHO05D006013 2.1e-19 99.4 91 57.1
SEGI_29030 Sequoiadendron giganteum HOM05D001007 ORTHO05D006705 3.5e-19 98.6 53 92.5
Pp3c22_5080 Physcomitrium patens HOM05D004515 ORTHO05D006013 3.9e-18 95.1 70 61.4
SMO266G0006 Selaginella moellendorffii HOM05D004515 ORTHO05D006013 5.1e-18 94.7 70 64.3
HanXRQChr08g0222111 Helianthus annuus HOM05D004515 ORTHO05D006013 2.5e-17 92.4 69 60.9
HanXRQChr14g0459791 Helianthus annuus HOM05D004515 ORTHO05D006013 2.5e-17 92.4 60 65.0
Lsat_1_v5_gn_8_12281 Lactuca sativa HOM05D004515 ORTHO05D006013 2.0e-14 82.8 69 55.1
ECA233G1018 Erigeron canadensis HOM05D000093 ORTHO05D006013 1.0e-10 70.5 61 50.8
Cre10.g428150 Chlamydomonas reinhardtii HOM05D004515 ORTHO05D006013 2.3e-10 69.3 65 46.2
SEGI_13255 Sequoiadendron giganteum HOM05D001013 ORTHO05D001703 6.7e-10 67.8 91 47.3
SEGI_02897 Sequoiadendron giganteum HOM05D000595 ORTHO05D006275 7.4e-09 64.3 52 65.4
SEGI_29352 Sequoiadendron giganteum HOM05D001125 ORTHO05D003189 8.1e-08 60.8 39 74.4
BraA03t11480Z Brassica rapa HOM05D004515 ORTHO05D006013 1.5e-06 56.6 33 75.8


User provided reference genes

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