Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.5e-264 914.8 447 100.0
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 2.8e-106 389.8 390 51.5
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 3.4e-104 382.9 407 49.4
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 4.9e-103 379.0 387 51.7
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 1.4e-102 377.5 416 49.5
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 1.9e-102 377.1 397 52.4
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 1.9e-102 377.1 387 51.9
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.5e-102 376.7 387 51.4
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 1.6e-101 374.0 387 51.4
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 2.7e-101 373.2 390 51.5
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.6e-101 372.5 383 51.4
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 4.6e-101 372.5 389 50.9
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 6.1e-101 372.1 381 52.8
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.0e-100 371.3 383 50.9
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.3e-100 370.9 389 51.2
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 2.3e-100 370.2 392 50.3
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 3.9e-100 369.4 392 50.0
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 8.7e-100 368.2 392 48.7
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.1e-99 367.9 383 50.4
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 2.5e-99 366.7 383 51.2
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 5.7e-99 365.5 389 49.4
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 5.7e-99 365.5 387 51.7
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 1.3e-98 364.4 392 50.3
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.6e-98 364.0 386 50.0
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 2.2e-98 363.6 390 49.5
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.8e-98 363.2 390 47.9
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 2.8e-98 363.2 383 50.1
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 4.8e-98 362.5 393 50.1
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 4.8e-98 362.5 382 51.0
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 1.4e-97 360.9 384 49.2
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.4e-97 360.9 395 50.4
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 1.4e-97 360.9 394 50.0
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 1.8e-97 360.5 392 49.7
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.8e-97 360.5 390 47.9
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.8e-97 360.5 408 47.8
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 2.4e-97 360.1 426 47.9
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.1e-97 359.8 390 47.7
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 4.1e-97 359.4 387 48.1
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 4.1e-97 359.4 391 49.1
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.1e-97 359.4 426 49.3
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 5.3e-97 359.0 393 50.4
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 9.0e-97 358.2 382 49.5
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 9.0e-97 358.2 397 49.4
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 9.0e-97 358.2 424 48.6
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 1.2e-96 357.8 391 49.1
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 2.6e-96 356.7 398 47.7
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 3.4e-96 356.3 383 50.7
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 4.5e-96 355.9 401 46.9
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 4.5e-96 355.9 409 47.7
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 5.9e-96 355.5 390 48.5
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 5.9e-96 355.5 394 50.5
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 5.9e-96 355.5 381 50.1
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 5.9e-96 355.5 410 49.0
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 7.7e-96 355.1 386 49.0
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 7.7e-96 355.1 391 51.2
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 7.7e-96 355.1 392 50.3
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.0e-95 354.8 392 49.5
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 1.0e-95 354.8 385 49.6
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 1.0e-95 354.8 382 49.2
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 1.3e-95 354.4 395 50.1
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 1.3e-95 354.4 391 47.6
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.2e-95 353.6 420 48.8
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 2.9e-95 353.2 388 48.7
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 3.8e-95 352.8 415 45.8
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 5.0e-95 352.4 395 47.8
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 5.0e-95 352.4 383 50.1
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 5.0e-95 352.4 391 48.1
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 6.5e-95 352.1 385 50.1
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 1.9e-94 350.5 382 47.4
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 2.5e-94 350.1 393 48.3
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 3.2e-94 349.7 390 45.9
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 3.2e-94 349.7 390 45.9
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 4.2e-94 349.4 409 46.2
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 7.2e-94 348.6 397 48.6
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 9.4e-94 348.2 382 46.9
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 9.4e-94 348.2 390 46.2
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.6e-93 347.4 382 48.4
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 2.1e-93 347.1 393 48.9
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 2.1e-93 347.1 382 50.0
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 4.6e-93 345.9 396 49.2
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 1.0e-92 344.7 387 48.3
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.4e-92 344.4 382 49.0
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 3.9e-92 342.8 479 42.8
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 8.8e-92 341.7 387 47.8
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 5.7e-91 339.0 353 52.4
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 2.2e-90 337.0 369 49.1
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 5.5e-86 322.4 379 44.1
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 1.2e-85 321.2 368 49.2
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.3e-84 317.0 430 44.0
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.3e-84 317.0 430 44.0
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 6.7e-84 315.5 419 43.7
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 8.8e-84 315.1 387 46.8
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 8.8e-84 315.1 376 47.1
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 1.5e-83 314.3 379 46.7
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 2.0e-83 313.9 369 48.8
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.3e-82 311.2 380 46.6
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 3.7e-82 309.7 384 45.8
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 8.2e-82 308.5 379 46.2
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 2.4e-81 307.0 374 47.9
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 4.1e-81 306.2 334 49.4
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 7.0e-81 305.4 321 50.2
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 7.0e-81 305.4 407 43.0
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 9.1e-81 305.1 382 45.8
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.5e-80 304.3 396 43.9
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 7.7e-80 302.0 368 45.9
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.3e-79 301.2 362 43.9
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 2.9e-79 300.1 368 46.5
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 5.0e-79 299.3 322 49.4
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 6.5e-79 298.9 374 42.2
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.5e-78 297.7 352 47.2
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 7.2e-78 295.4 372 43.0
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.6e-77 294.3 405 42.2
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 2.1e-77 293.9 365 44.1
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 6.1e-77 292.4 422 40.5
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.0e-77 292.0 350 46.6
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.0e-76 290.0 350 46.6
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 3.9e-76 289.7 386 43.8
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 4.4e-75 286.2 405 41.7
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 7.4e-75 285.4 386 43.3
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 7.4e-75 285.4 356 46.1
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.3e-74 284.6 368 44.8
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 2.2e-74 283.9 350 43.4
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 1.6e-72 277.7 238 57.6
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 4.5e-72 276.2 389 41.9
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 1.0e-71 275.0 386 42.2
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.0e-71 275.0 366 41.5
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 3.8e-71 273.1 346 46.0
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 1.9e-70 270.8 308 46.8
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.0e-68 265.0 370 39.7
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.3e-68 263.8 236 55.5
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 4.0e-68 263.1 347 40.9
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 8.8e-68 261.9 365 41.4
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 8.8e-68 261.9 365 41.4
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.5e-67 261.2 370 39.7
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 2.0e-67 260.8 365 41.1
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 9.7e-67 258.5 370 38.9
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 9.7e-67 258.5 332 44.9
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.3e-66 258.1 129 100.0
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.7e-66 256.5 245 53.9
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 7.0e-65 252.3 365 38.4
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 9.1e-65 251.9 332 44.6
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.5e-62 244.6 218 53.7
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.1e-61 239.2 235 50.6
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.4e-59 233.4 241 51.9
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 5.7e-59 232.6 279 45.9
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.2e-58 230.7 228 51.3
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.2e-53 214.9 193 52.8
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 2.6e-51 207.2 426 34.7
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 3.2e-49 200.3 430 35.6
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 3.5e-48 196.8 224 47.3
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 4.3e-46 189.9 336 38.7
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 9.5e-38 162.2 279 36.9
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 1.2e-37 161.8 432 29.2
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.1e-36 158.7 147 50.3
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 2.3e-23 114.4 97 52.6
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 1.5e-22 111.7 347 28.5
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 1.9e-22 111.3 221 32.1
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 3.3e-22 110.5 221 31.2
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.6e-21 108.2 300 27.0
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 1.8e-20 104.8 340 27.6
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 4.9e-18 96.7 111 48.6
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 1.1e-17 95.5 68 66.2
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 6.0e-16 89.7 128 43.8
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 1.0e-15 89.0 120 42.5
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 1.0e-15 89.0 112 46.4
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 6.2e-13 79.7 104 39.4
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 4.2e-09 67.0 104 42.3
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 6.0e-08 63.2 35 74.3
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 1.3e-07 62.0 102 37.3


User provided reference genes

Program Settings