Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04043 Sequoiadendron giganteum HOM05D006645 ORTHO05D008129 6.0e-169 597.4 302 100.0
SalBow7G0306 Salvia bowleyana HOM05D006645 ORTHO05D008129 8.1e-33 145.2 129 54.3
Glyma.08G007200 Glycine max HOM05D006645 ORTHO05D008129 1.7e-30 137.5 129 50.4
Cpa.g.sc2215.2 Carica papaya HOM05D006645 ORTHO05D008129 6.4e-30 135.6 126 50.8
AL8G25220 Arabidopsis lyrata HOM05D006645 ORTHO05D008129 7.1e-29 132.1 102 59.8
TAR622G0574 Trochodendron aralioides HOM05D006645 ORTHO05D008129 7.1e-29 132.1 154 44.2
A03p16420 Brassica napus HOM05D006645 ORTHO05D008129 9.3e-29 131.7 113 54.9
BraA03t10932Z Brassica rapa HOM05D006645 ORTHO05D008129 9.3e-29 131.7 113 54.9
Medtr3g098520 Medicago truncatula HOM05D006645 ORTHO05D008129 9.3e-29 131.7 104 55.8
VMungo0251G1538 Vigna mungo HOM05D006645 ORTHO05D008129 9.3e-29 131.7 131 51.9
Atru.chr6.1936 Acer truncatum HOM05D006645 ORTHO05D008129 1.2e-28 131.3 128 48.4
Migut.I00665 Erythranthe guttata HOM05D006645 ORTHO05D008129 1.2e-28 131.3 159 45.3
arahy.Tifrunner.gnm1.ann1.D72E2J Arachis hypogaea HOM05D006645 ORTHO05D008129 2.1e-28 130.6 96 61.5
BcaC01g06113 Brassica carinata HOM05D006645 ORTHO05D008129 2.1e-28 130.6 102 58.8
Carub.0008s1101 Capsella rubella HOM05D006645 ORTHO05D008129 2.1e-28 130.6 102 58.8
Sp6g13160 Schrenkiella parvula HOM05D006645 ORTHO05D008129 2.1e-28 130.6 102 58.8
arahy.Tifrunner.gnm1.ann1.1BW3L6 Arachis hypogaea HOM05D006645 ORTHO05D008129 2.7e-28 130.2 96 61.5
CSS0045487 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 3.5e-28 129.8 154 45.5
CSS0048618 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 3.5e-28 129.8 154 45.5
Phvul.002G280900 Phaseolus vulgaris HOM05D006645 ORTHO05D008129 3.5e-28 129.8 131 51.9
Ca_10875_v3 Cicer arietinum L. HOM05D006645 ORTHO05D008129 4.6e-28 129.4 161 43.5
Thhalv10014834m.g Eutrema salsugineum HOM05D006645 ORTHO05D008129 4.6e-28 129.4 102 58.8
CARHR257180 Cardamine hirsuta HOM05D006645 ORTHO05D008129 6.0e-28 129.0 102 57.8
Duzib205G0637 Durio zibethinus HOM05D006645 ORTHO05D008129 6.0e-28 129.0 133 47.4
Phvul.009G160600 Phaseolus vulgaris HOM05D006645 ORTHO05D008129 6.0e-28 129.0 166 42.8
BcaC01g06063 Brassica carinata HOM05D006645 ORTHO05D008129 7.9e-28 128.6 166 46.4
C03p19310 Brassica napus HOM05D006645 ORTHO05D008129 7.9e-28 128.6 166 46.4
Glyma.05G199700 Glycine max HOM05D006645 ORTHO05D008129 7.9e-28 128.6 129 51.9
Glyma.04G202300 Glycine max HOM05D006645 ORTHO05D008129 1.0e-27 128.3 164 42.1
TAR371G0070 Trochodendron aralioides HOM05D006645 ORTHO05D008129 1.0e-27 128.3 130 47.7
Psat5g055480 Pisum sativum HOM05D006645 ORTHO05D008129 1.3e-27 127.9 172 44.2
Lj4g0018315 Lotus japonicus HOM05D006645 ORTHO05D008129 1.8e-27 127.5 145 46.9
PGR142G3652 Punica granatum HOM05D006645 ORTHO05D008129 1.8e-27 127.5 102 55.9
MSTRG.22813 Avicennia marina HOM05D006645 ORTHO05D008129 2.3e-27 127.1 136 46.3
ClCG06G018300 Citrullus lanatus HOM05D006645 ORTHO05D008129 2.3e-27 127.1 135 48.1
Thecc.03G141700 Theobroma cacao HOM05D006645 ORTHO05D008129 2.3e-27 127.1 138 46.4
Sc22g0003260 Simmondsia chinensis HOM05D006645 ORTHO05D008129 3.0e-27 126.7 134 44.8
AT5G51010 Arabidopsis thaliana HOM05D006645 ORTHO05D008129 3.9e-27 126.3 102 57.8
CsaV3_1G000140 Cucumis sativus L. HOM05D006645 ORTHO05D008129 3.9e-27 126.3 152 42.8
Mapoly0188s0012 Marchantia polymorpha HOM05D006645 ORTHO05D008129 3.9e-27 126.3 150 48.7
Zm00001eb113350 Zea mays HOM05D006645 ORTHO05D008129 5.1e-27 125.9 95 61.1
Aa31LG3G7470 Aethionema arabicum HOM05D006645 ORTHO05D008129 6.7e-27 125.6 96 58.3
CAN.G1008.52 Capsicum annuum HOM05D006645 ORTHO05D008129 6.7e-27 125.6 144 49.3
PSO478G4148 Papaver somniferum HOM05D006645 ORTHO05D008129 6.7e-27 125.6 169 43.2
arahy.Tifrunner.gnm1.ann1.Z544U3 Arachis hypogaea HOM05D006645 ORTHO05D008129 8.7e-27 125.2 159 44.7
BolC3t14317H Brassica oleracea HOM05D006645 ORTHO05D008129 8.7e-27 125.2 166 45.8
Duzib084G1311 Durio zibethinus HOM05D006645 ORTHO05D008129 8.7e-27 125.2 130 50.0
Lsat_1_v5_gn_4_84301 Lactuca sativa HOM05D006645 ORTHO05D008129 8.7e-27 125.2 170 43.5
CDE05G3351 Ceratophyllum demersum HOM05D006645 ORTHO05D008129 1.1e-26 124.8 127 47.2
Lj1g0000604 Lotus japonicus HOM05D006645 ORTHO05D008129 1.1e-26 124.8 155 43.2
SGA_v2.0_scaffold37G14674 Striga asiatica HOM05D006645 ORTHO05D008129 1.1e-26 124.8 102 53.9
ATR0582G272 Amborella trichopoda HOM05D006645 ORTHO05D008129 1.5e-26 124.4 131 49.6
MD06G1129100 Malus domestica HOM05D006645 ORTHO05D008129 1.5e-26 124.4 137 46.7
unitig_52.g17484 Utricularia gibba HOM05D006645 ORTHO05D008129 1.9e-26 124.0 101 53.5
EL10Ac5g11273 Beta vulgaris HOM05D006645 ORTHO05D008129 2.5e-26 123.6 157 43.3
Gohir.A12G194100 Gossypium hirsutum HOM05D006645 ORTHO05D008129 2.5e-26 123.6 172 40.7
Manes.06G127300 Manihot esculenta HOM05D006645 ORTHO05D008129 2.5e-26 123.6 133 48.1
AUR62032209 Chenopodium quinoa HOM05D006645 ORTHO05D008129 3.3e-26 123.2 163 44.8
DCAR_016335 Daucus carota HOM05D006645 ORTHO05D008129 3.3e-26 123.2 102 55.9
Oeu013667.1 Olea europaea HOM05D006645 ORTHO05D008129 3.3e-26 123.2 151 43.0
CDE05G2456 Ceratophyllum demersum HOM05D006645 ORTHO05D008129 4.3e-26 122.9 161 41.0
COL.COLO4_37268 Corchorus olitorius HOM05D006645 ORTHO05D008129 4.3e-26 122.9 150 42.7
THA.LOC104811555 Tarenaya hassleriana HOM05D006645 ORTHO05D008129 4.3e-26 122.9 126 49.2
ECA232G4473 Erigeron canadensis HOM05D000001 ORTHO05D001247 5.6e-26 122.5 97 55.7
Gohir.D12G196500 Gossypium hirsutum HOM05D006645 ORTHO05D008129 5.6e-26 122.5 174 40.2
PSO017G3202 Papaver somniferum HOM05D006645 ORTHO05D008129 5.6e-26 122.5 169 41.4
Actinidia18289 Actinidia chinensis HOM05D006645 ORTHO05D008129 7.4e-26 122.1 106 50.0
Dinv13711 Davidia involucrata HOM05D006645 ORTHO05D008129 7.4e-26 122.1 151 42.4
Gorai.008G211100 Gossypium raimondii HOM05D006645 ORTHO05D008129 7.4e-26 122.1 174 38.5
Nn4g22122 Nelumbo nucifera HOM05D006645 ORTHO05D008129 7.4e-26 122.1 165 42.4
Solyc03g118130.3 Solanum lycopersicum HOM05D006645 ORTHO05D008129 7.4e-26 122.1 137 47.4
arahy.Tifrunner.gnm1.ann1.FT61ID Arachis hypogaea HOM05D006645 ORTHO05D008129 9.6e-26 121.7 150 46.7
PGSC0003DMG400014238 Solanum tuberosum HOM05D006645 ORTHO05D008129 9.6e-26 121.7 137 46.7
AUR62043377 Chenopodium quinoa HOM05D006645 ORTHO05D008129 1.3e-25 121.3 165 41.8
Lj5C86G18 Lonicera japonica HOM05D006645 ORTHO05D008129 1.3e-25 121.3 140 47.1
Sopen03g037030 Solanum pennellii HOM05D006645 ORTHO05D008129 1.3e-25 121.3 137 46.7
TWI14G0928 Tripterygium wilfordii HOM05D006645 ORTHO05D008129 1.3e-25 121.3 130 46.9
TWI39G0437 Tripterygium wilfordii HOM05D006645 ORTHO05D008129 1.3e-25 121.3 96 56.2
CiPaw.12G000500 Carya illinoinensis HOM05D006645 ORTHO05D008129 2.1e-25 120.6 142 43.0
Aqoxy3G01868 Aquilegia oxysepala HOM05D006645 ORTHO05D008129 2.8e-25 120.2 124 46.8
Cc04_g05780 Coffea canephora HOM05D006645 ORTHO05D008129 2.8e-25 120.2 175 40.0
Lalb_Chr08g0237591 Lupinus albus HOM05D006645 ORTHO05D008129 2.8e-25 120.2 96 55.2
Nitab4.5_0000976g0110 Nicotiana tabacum HOM05D006645 ORTHO05D008129 3.7e-25 119.8 167 45.5
Prupe.5G140400 Prunus persica HOM05D006645 ORTHO05D008129 3.7e-25 119.8 96 57.3
SMO116G0387 Selaginella moellendorffii HOM05D006645 ORTHO05D008129 3.7e-25 119.8 169 42.6
RcHm_v2.0_Chr7g0188541 Rosa chinensis HOM05D006645 ORTHO05D008129 6.2e-25 119.0 129 45.0
Ah.11g046980 Amaranthus hybridus HOM05D006645 ORTHO05D008129 8.1e-25 118.6 139 47.5
MELO3C026168.2 Cucumis melo HOM05D006645 ORTHO05D008129 8.1e-25 118.6 143 42.0
Dinv23234 Davidia involucrata HOM05D006645 ORTHO05D008129 8.1e-25 118.6 98 55.1
Actinidia25512 Actinidia chinensis HOM05D006645 ORTHO05D008129 1.4e-24 117.9 81 60.5
MD14G1146000 Malus domestica HOM05D006645 ORTHO05D008129 1.4e-24 117.9 137 45.3
Rhsim08G0198600 Rhododendron simsii HOM05D006645 ORTHO05D008129 1.4e-24 117.9 166 43.4
Hma1.2p1_0452F.1_g155930 Hydrangea macrophylla HOM05D006645 ORTHO05D008129 1.8e-24 117.5 154 40.3
Peaxi162Scf00314g00728 Petunia axillaris HOM05D006645 ORTHO05D008129 1.8e-24 117.5 172 43.6
HanXRQChr09g0273781 Helianthus annuus HOM05D006645 ORTHO05D008129 2.4e-24 117.1 162 42.6
GSVIVG01008662001 Vitis vinifera HOM05D006645 ORTHO05D008129 2.4e-24 117.1 98 53.1
FvH4_5g09700 Fragaria vesca HOM05D006645 ORTHO05D008129 3.1e-24 116.7 168 40.5
Sabra15G0128400 Salix brachista HOM05D006645 ORTHO05D008129 5.3e-24 115.9 164 40.9
Sabra15G0130800 Salix brachista HOM05D006645 ORTHO05D008129 6.9e-24 115.5 164 40.9
Haze_07089 Corylus avellana HOM05D006645 ORTHO05D008129 9.0e-24 115.2 157 40.1
Eucgr.K02190 Eucalyptus grandis HOM05D006645 ORTHO05D008129 1.2e-23 114.8 148 41.9
Pp3c20_8260 Physcomitrium patens HOM05D006645 ORTHO05D008129 1.5e-23 114.4 133 45.1
Sed0010334 Sechium edule HOM05D006645 ORTHO05D008129 2.0e-23 114.0 100 53.0
Hund10027 Selenicereus undatus HOM05D006645 ORTHO05D008129 2.0e-23 114.0 165 41.2
vmacro19114 Vaccinium macrocarpon HOM05D006645 ORTHO05D008129 2.0e-23 114.0 175 39.4
vmacro19194 Vaccinium macrocarpon HOM05D006645 ORTHO05D008129 2.0e-23 114.0 175 39.4
FAN13G1824 Fragaria x ananassa HOM05D006645 ORTHO05D008129 2.6e-23 113.6 168 39.3
Ciclev10032925m.g Citrus clementina HOM05D006645 ORTHO05D008129 3.4e-23 113.2 157 40.1
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 4.5e-23 112.8 138 45.7
Nitab4.5_0010893g0030 Nicotiana tabacum HOM05D006645 ORTHO05D008129 1.0e-22 111.7 166 44.0
Potri.015G108100 Populus trichocarpa HOM05D006645 ORTHO05D008129 1.3e-22 111.3 168 39.9
Os11g0528500 Oryza sativa ssp. japonica HOM05D006645 ORTHO05D008129 2.2e-22 110.5 94 56.4
Lj9A488T61 Lonicera japonica HOM05D006645 ORTHO05D008129 2.6e-15 87.0 167 36.5
SEGI_26268 Sequoiadendron giganteum HOM05D002861 ORTHO05D003104 1.2e-12 78.2 137 38.0
QL10p000304 Quercus lobata HOM05D006645 ORTHO05D008129 3.5e-12 76.6 131 36.6
Glyma.17G183301 Glycine max HOM05D006645 ORTHO05D008129 1.3e-11 74.7 64 54.7
SEGI_05287 Sequoiadendron giganteum HOM05D000508 ORTHO05D000371 2.3e-11 73.9 80 41.2
Cre12.g510400 Chlamydomonas reinhardtii HOM05D006062 ORTHO05D007613 8.2e-09 65.5 102 38.2
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 8.2e-09 65.5 105 40.0
SEGI_09110 Sequoiadendron giganteum HOM05D000642 ORTHO05D000483 2.4e-08 63.9 101 34.7
TWI60G0061 Tripterygium wilfordii HOM05D006062 ORTHO05D007613 2.4e-08 63.9 108 38.0
Migut.F00106 Erythranthe guttata HOM05D006062 ORTHO05D007613 4.1e-08 63.2 99 42.4
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 5.3e-08 62.8 108 36.1
Gorai.003G051200 Gossypium raimondii HOM05D006062 ORTHO05D007613 5.3e-08 62.8 108 36.1
CANSAT21G2164 Cannabis sativa HOM05D006062 ORTHO05D007613 6.9e-08 62.4 108 38.0
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 6.9e-08 62.4 108 36.1
LjContig00222g0021869 Lotus japonicus HOM05D006062 ORTHO05D007613 6.9e-08 62.4 99 39.4
AagrBONN_evm.TU.Sc2ySwM_362.1750 Anthoceros agrestis HOM05D006645 ORTHO05D008129 1.5e-07 61.2 50 52.0
unitig_52.g17696 Utricularia gibba HOM05D006062 ORTHO05D007613 1.5e-07 61.2 82 43.9
Cre24.g755197 Chlamydomonas reinhardtii HOM05D006645 ORTHO05D008129 2.0e-07 60.8 106 37.7
Actinidia18696 Actinidia chinensis HOM05D006062 ORTHO05D007613 3.4e-07 60.1 99 40.4
Pp3c2_6110 Physcomitrium patens HOM05D006645 ORTHO05D008129 3.4e-07 60.1 41 56.1
Os08g0162600 Oryza sativa ssp. japonica HOM05D006062 ORTHO05D007613 4.5e-07 59.7 63 44.4
Pp3c14_10490 Physcomitrium patens HOM05D006645 ORTHO05D008129 5.9e-07 59.3 55 45.5
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 7.7e-07 58.9 98 38.8
ECA233G2527 Erigeron canadensis HOM05D006062 ORTHO05D007613 7.7e-07 58.9 66 39.4
Actinidia28267 Actinidia chinensis HOM05D006062 ORTHO05D007613 1.0e-06 58.5 99 39.4
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 1.0e-06 58.5 69 40.6
QL09p026245 Quercus lobata HOM05D006062 ORTHO05D007613 1.0e-06 58.5 99 37.4
SEGI_37250 Sequoiadendron giganteum HOM05D000005 ORTHO05D000239 1.0e-06 58.5 107 35.5
SMO165G0067 Selaginella moellendorffii HOM05D006645 ORTHO05D008129 1.3e-06 58.2 118 32.2
Pp3c10_15730 Physcomitrium patens HOM05D006062 ORTHO05D007613 1.7e-06 57.8 68 36.8
SGA_v2.0_scaffold18G08502 Striga asiatica HOM05D006062 ORTHO05D007613 2.2e-06 57.4 101 35.6
Hma1.2p1_0758F.1_g213560 Hydrangea macrophylla HOM05D006062 ORTHO05D007613 3.8e-06 56.6 93 36.6
Zm00001eb415470 Zea mays HOM05D006062 ORTHO05D007613 3.8e-06 56.6 93 34.4
SalBow4G0173 Salvia bowleyana HOM05D006062 ORTHO05D007613 8.5e-06 55.5 98 34.7
SEGI_19152 Sequoiadendron giganteum HOM05D006062 ORTHO05D007613 8.5e-06 55.5 99 38.4


User provided reference genes

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