Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04013 Sequoiadendron giganteum HOM05D002415 ORTHO05D002522 3.0e-63 245.0 121 100.0
SEGI_03136 Sequoiadendron giganteum HOM05D002415 ORTHO05D002522 1.9e-17 92.8 96 56.2
Haze_00241 Corylus avellana HOM05D002415 ORTHO05D002522 2.5e-17 92.4 117 47.9
Haze_00244 Corylus avellana HOM05D002415 ORTHO05D002522 2.5e-17 92.4 117 47.9
Potri.012G018300 Populus trichocarpa HOM05D002415 ORTHO05D002522 2.3e-15 85.9 99 46.5
Sabra12G0014200 Salix brachista HOM05D002415 ORTHO05D002522 4.0e-15 85.1 99 46.5
Manes.01G039300 Manihot esculenta HOM05D002415 ORTHO05D002522 5.2e-15 84.7 101 48.5
CiPaw.05G199200 Carya illinoinensis HOM05D002415 ORTHO05D002522 8.9e-15 84.0 99 48.5
Potri.015G009632 Populus trichocarpa HOM05D002415 ORTHO05D002522 1.2e-14 83.6 99 48.5
PGSC0003DMG400018520 Solanum tuberosum HOM05D002415 ORTHO05D002522 2.6e-14 82.4 98 48.0
Actinidia34239 Actinidia chinensis HOM05D002415 ORTHO05D002522 3.4e-14 82.0 99 46.5
CSS0023308 Camellia sinensis var. sinensis HOM05D002415 ORTHO05D002522 1.3e-13 80.1 116 44.0
Sopen03g022670 Solanum pennellii HOM05D002415 ORTHO05D002522 1.7e-13 79.7 98 48.0
Solyc03g082860.3 Solanum lycopersicum HOM05D002415 ORTHO05D002522 2.2e-13 79.3 98 48.0
Thecc.03G202700 Theobroma cacao HOM05D002415 ORTHO05D002522 2.2e-13 79.3 101 47.5
CSS0037563 Camellia sinensis var. sinensis HOM05D002415 ORTHO05D002522 2.9e-13 79.0 116 43.1
Nn3g18920 Nelumbo nucifera HOM05D002415 ORTHO05D002522 4.9e-13 78.2 96 44.8
Dinv35355 Davidia involucrata HOM05D002415 ORTHO05D002522 1.1e-12 77.0 96 49.0
Hma1.2p1_0707F.1_g207050 Hydrangea macrophylla HOM05D002415 ORTHO05D002522 1.4e-12 76.6 99 45.5
Sc19g0000770 Simmondsia chinensis HOM05D002415 ORTHO05D002522 1.4e-12 76.6 99 44.4
CANSAT21G0629 Cannabis sativa HOM05D002415 ORTHO05D002522 1.9e-12 76.3 99 45.5
Eucgr.H04938 Eucalyptus grandis HOM05D002415 ORTHO05D002522 1.9e-12 76.3 105 44.8
Hund21021 Selenicereus undatus HOM05D002415 ORTHO05D002522 1.9e-12 76.3 96 47.9
Eucgr.A01443 Eucalyptus grandis HOM05D002415 ORTHO05D002522 3.2e-12 75.5 99 43.4
TWI39G0734 Tripterygium wilfordii HOM05D002415 ORTHO05D002522 3.2e-12 75.5 97 44.3
Nitab4.5_0005326g0040 Nicotiana tabacum HOM05D002415 ORTHO05D002522 5.4e-12 74.7 102 47.1
TAR381G0984 Trochodendron aralioides HOM05D002415 ORTHO05D002522 7.1e-12 74.3 113 44.2
Hma1.2p1_2856F.1_g329495 Hydrangea macrophylla HOM05D002415 ORTHO05D002522 9.2e-12 73.9 99 43.4
ATR0757G102 Amborella trichopoda HOM05D002415 ORTHO05D002522 1.2e-11 73.6 97 48.5
DCAR_020342 Daucus carota HOM05D002415 ORTHO05D002522 1.2e-11 73.6 94 42.6
Glyma.06G151500 Glycine max HOM05D002415 ORTHO05D002522 1.2e-11 73.6 115 41.7
Sabra15G0007600 Salix brachista HOM05D002415 ORTHO05D002522 1.6e-11 73.2 83 47.0
Cc02_g01230 Coffea canephora HOM05D002415 ORTHO05D002522 2.1e-11 72.8 100 45.0
PGR042G1881 Punica granatum HOM05D002415 ORTHO05D002522 2.1e-11 72.8 99 42.4
ClCG01G000280 Citrullus lanatus HOM05D002415 ORTHO05D002522 2.7e-11 72.4 112 40.2
Peaxi162Scf00740g00247 Petunia axillaris HOM05D002415 ORTHO05D002522 3.5e-11 72.0 101 42.6
Sed0025110 Sechium edule HOM05D002415 ORTHO05D002522 3.5e-11 72.0 99 41.4
MSTRG.8636 Avicennia marina HOM05D002415 ORTHO05D002522 4.6e-11 71.6 111 41.4
Glyma.04G214600 Glycine max HOM05D002415 ORTHO05D002522 4.6e-11 71.6 115 40.9
vmacro06401 Vaccinium macrocarpon HOM05D002415 ORTHO05D002522 4.6e-11 71.6 110 41.8
EL10Ac3g05242 Beta vulgaris HOM05D002415 ORTHO05D002522 6.0e-11 71.2 100 44.0
BcaNung01226 Brassica carinata HOM05D002415 ORTHO05D002522 6.0e-11 71.2 99 43.4
Migut.F00189 Erythranthe guttata HOM05D002415 ORTHO05D002522 6.0e-11 71.2 98 46.9
Zm00001eb230520 Zea mays HOM05D002415 ORTHO05D002522 6.0e-11 71.2 97 45.4
AUR62035568 Chenopodium quinoa HOM05D002415 ORTHO05D002522 1.0e-10 70.5 99 42.4
Ciclev10020975m.g Citrus clementina HOM05D002415 ORTHO05D002522 1.0e-10 70.5 104 46.2
Duzib205G0596 Durio zibethinus HOM05D002415 ORTHO05D002522 1.0e-10 70.5 101 44.6
Nitab4.5_0002780g0070 Nicotiana tabacum HOM05D002415 ORTHO05D002522 1.0e-10 70.5 102 44.1
Cc07_g17980 Coffea canephora HOM05D002415 ORTHO05D002522 1.3e-10 70.1 98 43.9
CsaV3_5G000290 Cucumis sativus L. HOM05D002415 ORTHO05D002522 1.3e-10 70.1 99 42.4
Ah.07g205290 Amaranthus hybridus HOM05D002415 ORTHO05D002522 1.7e-10 69.7 99 41.4
BcaNung01225 Brassica carinata HOM05D002415 ORTHO05D002522 1.7e-10 69.7 99 44.4
COL.COLO4_16808 Corchorus olitorius HOM05D002415 ORTHO05D002522 1.7e-10 69.7 101 42.6
Os01g0965500 Oryza sativa ssp. japonica HOM05D002415 ORTHO05D002522 1.7e-10 69.7 103 40.8
Phvul.008G015700 Phaseolus vulgaris HOM05D002415 ORTHO05D002522 1.7e-10 69.7 99 42.4
unitig_62.g23850 Utricularia gibba HOM05D002415 ORTHO05D002522 1.7e-10 69.7 79 48.1
SGA_v2.0_scaffold192G40518 Striga asiatica HOM05D002415 ORTHO05D002522 2.3e-10 69.3 97 44.3
AUR62006060 Chenopodium quinoa HOM05D002415 ORTHO05D002522 3.0e-10 68.9 99 41.4
CARHR189120 Cardamine hirsuta HOM05D002415 ORTHO05D002522 3.9e-10 68.6 98 44.9
Zm00001eb362400 Zea mays HOM05D002415 ORTHO05D002522 3.9e-10 68.6 101 41.6
Nn5g28665 Nelumbo nucifera HOM05D002415 ORTHO05D002522 5.1e-10 68.2 103 42.7
TAR375G0494 Trochodendron aralioides HOM05D002415 ORTHO05D002522 5.1e-10 68.2 96 43.8
C07p43400 Brassica napus HOM05D002415 ORTHO05D002522 6.6e-10 67.8 99 42.4
BolC7t44867H Brassica oleracea HOM05D002415 ORTHO05D002522 6.6e-10 67.8 99 42.4
Duzib147G0942 Durio zibethinus HOM05D002415 ORTHO05D002522 6.6e-10 67.8 112 40.2
A06p35160 Brassica napus HOM05D002415 ORTHO05D002522 8.6e-10 67.4 99 43.4
BraA06t26436Z Brassica rapa HOM05D002415 ORTHO05D002522 8.6e-10 67.4 99 43.4
MELO3C005903.2 Cucumis melo HOM05D002415 ORTHO05D002522 8.6e-10 67.4 99 41.4
Lj1g0002313 Lotus japonicus HOM05D002415 ORTHO05D002522 8.6e-10 67.4 99 44.4
MBI12_g43642_MAGBIO Magnolia biondii HOM05D002415 ORTHO05D002522 8.6e-10 67.4 97 48.5
CAN.G481.41 Capsicum annuum HOM05D002415 ORTHO05D002522 1.1e-09 67.0 116 40.5
CiPaw.03G128200 Carya illinoinensis HOM05D002415 ORTHO05D002522 1.1e-09 67.0 112 40.2
VMungo1383G1411 Vigna mungo HOM05D002415 ORTHO05D002522 1.1e-09 67.0 99 42.4
Carub.0006s2215 Capsella rubella HOM05D002415 ORTHO05D002522 1.5e-09 66.6 98 44.9
CAN.G853.47 Capsicum annuum HOM05D002415 ORTHO05D002522 1.5e-09 66.6 112 41.1
Gohir.D03G115900 Gossypium hirsutum HOM05D002415 ORTHO05D002522 1.5e-09 66.6 101 42.6
Gorai.003G122100 Gossypium raimondii HOM05D002415 ORTHO05D002522 1.5e-09 66.6 101 42.6
Oeu047677.1 Olea europaea HOM05D002415 ORTHO05D002522 1.5e-09 66.6 101 39.6
Rhsim03G0211400 Rhododendron simsii HOM05D002415 ORTHO05D002522 1.5e-09 66.6 103 40.8
arahy.Tifrunner.gnm1.ann1.29VWQI Arachis hypogaea HOM05D002415 ORTHO05D002522 2.5e-09 65.9 100 43.0
arahy.Tifrunner.gnm1.ann1.TZQA37 Arachis hypogaea HOM05D002415 ORTHO05D002522 2.5e-09 65.9 100 43.0
A02p40660 Brassica napus HOM05D002415 ORTHO05D002522 2.5e-09 65.9 116 41.4
BraA02t09013Z Brassica rapa HOM05D002415 ORTHO05D002522 2.5e-09 65.9 116 41.4
Sed0014882 Sechium edule HOM05D002415 ORTHO05D002522 4.3e-09 65.1 99 41.4
GSVIVG01026529001 Vitis vinifera HOM05D002415 ORTHO05D002522 4.3e-09 65.1 103 40.8
Aqoxy7G00046 Aquilegia oxysepala HOM05D002415 ORTHO05D002522 5.6e-09 64.7 97 43.3
FvH4_1g24041 Fragaria vesca HOM05D002415 ORTHO05D002522 5.6e-09 64.7 112 38.4
Gohir.A03G048900 Gossypium hirsutum HOM05D002415 ORTHO05D002522 5.6e-09 64.7 101 41.6
Lalb_Chr23g0272551 Lupinus albus HOM05D002415 ORTHO05D002522 5.6e-09 64.7 99 42.4
THA.LOC104803335 Tarenaya hassleriana HOM05D002415 ORTHO05D002522 5.6e-09 64.7 100 41.0
Ah.13g070510 Amaranthus hybridus HOM05D002415 ORTHO05D002522 7.3e-09 64.3 99 37.4
AL6G35850 Arabidopsis lyrata HOM05D002415 ORTHO05D002522 7.3e-09 64.3 102 43.1
arahy.Tifrunner.gnm1.ann1.LSW17J Arachis hypogaea HOM05D002415 ORTHO05D002522 7.3e-09 64.3 138 31.9
BcaC03g17983 Brassica carinata HOM05D002415 ORTHO05D002522 7.3e-09 64.3 99 42.4
Lj3A899T68 Lonicera japonica HOM05D002415 ORTHO05D002522 7.3e-09 64.3 99 43.4
FAN19G2964 Fragaria x ananassa HOM05D002415 ORTHO05D002522 9.5e-09 63.9 112 38.4
Aqoxy6G00382 Aquilegia oxysepala HOM05D002415 ORTHO05D002522 1.2e-08 63.5 116 39.7
Thhalv10004504m.g Eutrema salsugineum HOM05D002415 ORTHO05D002522 1.2e-08 63.5 101 42.6
Phvul.009G148600 Phaseolus vulgaris HOM05D002415 ORTHO05D002522 1.2e-08 63.5 112 38.4
Sp2g22990 Schrenkiella parvula HOM05D002415 ORTHO05D002522 1.2e-08 63.5 101 41.6
THA.LOC104819316 Tarenaya hassleriana HOM05D002415 ORTHO05D002522 1.2e-08 63.5 101 40.6
Aa31LG3G17320 Aethionema arabicum HOM05D002415 ORTHO05D002522 1.6e-08 63.2 102 37.3
C02p60390 Brassica napus HOM05D002415 ORTHO05D002522 1.6e-08 63.2 99 42.4
BolC2t12094H Brassica oleracea HOM05D002415 ORTHO05D002522 1.6e-08 63.2 99 42.4
PSO063G1257 Papaver somniferum HOM05D002415 ORTHO05D002522 1.6e-08 63.2 101 41.6
Prupe.2G314600 Prunus persica HOM05D002415 ORTHO05D002522 2.1e-08 62.8 132 37.9
SMO119G0002 Selaginella moellendorffii HOM05D002415 ORTHO05D002522 2.1e-08 62.8 96 38.5
MD01G1224300 Malus domestica HOM05D002415 ORTHO05D002522 2.8e-08 62.4 100 39.0
TAR374G1451 Trochodendron aralioides HOM05D002415 ORTHO05D002522 2.8e-08 62.4 77 46.8
Actinidia09830 Actinidia chinensis HOM05D002415 ORTHO05D002522 3.6e-08 62.0 103 39.8
PGR102G2508 Punica granatum HOM05D002415 ORTHO05D002522 3.6e-08 62.0 101 38.6
TPR.G34640 Trifolium pratense HOM05D002415 ORTHO05D002522 3.6e-08 62.0 100 38.0
Dinv11311 Davidia involucrata HOM05D002415 ORTHO05D002522 4.7e-08 61.6 100 39.0
Lalb_Chr08g0238491 Lupinus albus HOM05D002415 ORTHO05D002522 4.7e-08 61.6 85 38.8
QL06p029526 Quercus lobata HOM05D002415 ORTHO05D002522 6.2e-08 61.2 109 37.6
HPP92_009309 Vanilla planifolia HOM05D002415 ORTHO05D002522 6.2e-08 61.2 101 43.6
Atru.chr12.2266 Acer truncatum HOM05D002415 ORTHO05D002522 8.1e-08 60.8 88 44.3
Lsat_1_v5_gn_2_135300 Lactuca sativa HOM05D002415 ORTHO05D002522 8.1e-08 60.8 96 42.7
RcHm_v2.0_Chr1g0381761 Rosa chinensis HOM05D002415 ORTHO05D002522 1.1e-07 60.5 99 36.4
Cfa016205 Carpinus fangiana HOM05D002415 ORTHO05D002522 1.4e-07 60.1 52 63.5
MD01G1012000 Malus domestica HOM05D002415 ORTHO05D002522 1.4e-07 60.1 114 36.8
Ca_12779_v3 Cicer arietinum L. HOM05D002415 ORTHO05D002522 2.3e-07 59.3 113 37.2
Lj4A849G56 Lonicera japonica HOM05D002415 ORTHO05D002522 2.3e-07 59.3 106 40.6
VMungo1309G0076 Vigna mungo HOM05D002415 ORTHO05D002522 2.3e-07 59.3 115 36.5
Cpa.g.sc3.113 Carica papaya HOM05D002415 ORTHO05D002522 3.1e-07 58.9 79 44.3
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 3.1e-07 58.9 116 35.3
TWI31G1475 Tripterygium wilfordii HOM05D002415 ORTHO05D002522 3.1e-07 58.9 124 36.3
BcaC03g13275 Brassica carinata HOM05D002415 ORTHO05D002522 5.2e-07 58.2 81 39.5
C02p04060 Brassica napus HOM05D002415 ORTHO05D002522 5.2e-07 58.2 81 39.5
BolC2t06368H Brassica oleracea HOM05D002415 ORTHO05D002522 5.2e-07 58.2 81 39.5
Nitab4.5_0004813g0030 Nicotiana tabacum HOM05D002415 ORTHO05D002522 5.2e-07 58.2 112 38.4
QL09p007788 Quercus lobata HOM05D002415 ORTHO05D002522 5.2e-07 58.2 99 40.4
CBR_g10858 Chara braunii HOM05D002415 ORTHO05D002522 6.8e-07 57.8 97 39.2
MELO3C023256.2 Cucumis melo HOM05D002415 ORTHO05D002522 6.8e-07 57.8 112 37.5
MD15G1338000 Malus domestica HOM05D002415 ORTHO05D002522 6.8e-07 57.8 114 36.8
Manes.12G152800 Manihot esculenta HOM05D002415 ORTHO05D002522 6.8e-07 57.8 101 39.6
ClCG02G000610 Citrullus lanatus HOM05D002415 ORTHO05D002522 8.9e-07 57.4 111 36.9
BcaB08g37166 Brassica carinata HOM05D002415 ORTHO05D002522 1.2e-06 57.0 100 34.0
BcaB08g37181 Brassica carinata HOM05D002415 ORTHO05D002522 1.2e-06 57.0 100 34.0
Lsat_1_v5_gn_8_44941 Lactuca sativa HOM05D002415 ORTHO05D002522 1.2e-06 57.0 109 33.0
GSVIVG01038589001 Vitis vinifera HOM05D002415 ORTHO05D002522 1.2e-06 57.0 99 36.4
CARHR203620 Cardamine hirsuta HOM05D002415 ORTHO05D002522 1.5e-06 56.6 100 35.0
AUR62003607 Chenopodium quinoa HOM05D002415 ORTHO05D002522 2.0e-06 56.2 75 44.0
CsaV3_2G018160 Cucumis sativus L. HOM05D002415 ORTHO05D002522 2.0e-06 56.2 112 36.6
Nitab4.5_0000015g0250 Nicotiana tabacum HOM05D002415 ORTHO05D002522 2.0e-06 56.2 102 38.2
Nitab4.5_0002121g0020 Nicotiana tabacum HOM05D002415 ORTHO05D002522 2.0e-06 56.2 112 36.6
PSO170G0223 Papaver somniferum HOM05D002415 ORTHO05D002522 2.0e-06 56.2 94 40.4
Peaxi162Scf00618g00224 Petunia axillaris HOM05D002415 ORTHO05D002522 2.0e-06 56.2 92 40.2
AagrBONN_evm.TU.Sc2ySwM_362.313 Anthoceros agrestis HOM05D002415 ORTHO05D002522 2.6e-06 55.8 94 40.4
arahy.Tifrunner.gnm1.ann1.655WP4 Arachis hypogaea HOM05D002415 ORTHO05D002522 2.6e-06 55.8 123 35.0
Thhalv10013971m.g Eutrema salsugineum HOM05D002415 ORTHO05D002522 2.6e-06 55.8 89 36.0
A02p00150 Brassica napus HOM05D002415 ORTHO05D002522 3.4e-06 55.5 102 35.3
BraA02t04999Z Brassica rapa HOM05D002415 ORTHO05D002522 3.4e-06 55.5 102 35.3
Lj1g0016737 Lotus japonicus HOM05D002415 ORTHO05D002522 3.4e-06 55.5 99 38.4
Sp6g33610 Schrenkiella parvula HOM05D002415 ORTHO05D002522 4.4e-06 55.1 100 34.0
Dinv29252 Davidia involucrata HOM05D002415 ORTHO05D002522 5.8e-06 54.7 69 49.3
SHI11444 Sapria himalayana HOM05D002415 ORTHO05D002522 5.8e-06 54.7 100 39.0
BolC9t59534H Brassica oleracea HOM05D002415 ORTHO05D002522 7.6e-06 54.3 101 32.7
Lsat_1_v5_gn_1_20220 Lactuca sativa HOM05D002415 ORTHO05D002522 7.6e-06 54.3 81 39.5
Medtr3g095840 Medicago truncatula HOM05D002415 ORTHO05D002522 7.6e-06 54.3 101 36.6
C09p67720 Brassica napus HOM05D002415 ORTHO05D002522 9.9e-06 53.9 101 32.7


User provided reference genes

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