Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 8.1e-51 203.4 97 100.0
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.2e-17 93.2 67 62.7
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.2e-17 93.2 67 61.2
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.2e-17 93.2 67 61.2
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.2e-17 93.2 67 62.7
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.2e-17 93.2 67 62.7
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.5e-17 92.8 67 61.2
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.0e-17 92.4 67 62.7
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.0e-17 92.4 67 62.7
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 2.0e-17 92.4 67 61.2
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.0e-17 92.4 72 61.1
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.6e-17 92.0 67 62.7
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.6e-17 92.0 67 62.7
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.6e-17 92.0 67 65.7
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 3.4e-17 91.7 67 58.2
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 3.4e-17 91.7 67 61.2
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 4.5e-17 91.3 67 58.2
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.5e-17 91.3 67 62.7
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.5e-17 91.3 67 58.2
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 4.5e-17 91.3 67 58.2
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 5.8e-17 90.9 67 61.2
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 5.8e-17 90.9 67 59.7
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 5.8e-17 90.9 67 59.7
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 5.8e-17 90.9 67 59.7
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 7.6e-17 90.5 67 61.2
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.6e-17 90.5 67 58.2
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.0e-16 90.1 67 61.2
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.0e-16 90.1 67 59.7
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.0e-16 90.1 67 59.7
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.3e-16 89.7 67 59.7
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.3e-16 89.7 67 58.2
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 1.3e-16 89.7 67 58.2
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.3e-16 89.7 67 61.2
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 1.3e-16 89.7 67 59.7
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 1.3e-16 89.7 67 58.2
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.7e-16 89.4 67 59.7
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 1.7e-16 89.4 67 61.2
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.2e-16 89.0 67 59.7
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 2.2e-16 89.0 67 61.2
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 2.2e-16 89.0 67 61.2
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 2.2e-16 89.0 67 61.2
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 2.2e-16 89.0 67 61.2
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 2.2e-16 89.0 67 61.2
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.2e-16 89.0 67 59.7
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 2.9e-16 88.6 68 57.4
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.9e-16 88.6 67 58.2
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 2.9e-16 88.6 67 56.7
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 3.8e-16 88.2 67 58.2
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 3.8e-16 88.2 67 59.7
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 3.8e-16 88.2 67 58.2
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.8e-16 88.2 67 56.7
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 3.8e-16 88.2 67 58.2
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.9e-16 87.8 68 57.4
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 4.9e-16 87.8 67 58.2
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 4.9e-16 87.8 67 58.2
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 6.5e-16 87.4 67 55.2
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 6.5e-16 87.4 67 55.2
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 6.5e-16 87.4 67 58.2
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 6.5e-16 87.4 67 56.7
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 6.5e-16 87.4 67 56.7
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 6.5e-16 87.4 67 56.7
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 6.5e-16 87.4 67 56.7
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 6.5e-16 87.4 67 58.2
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 8.4e-16 87.0 67 58.2
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 8.4e-16 87.0 67 58.2
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 8.4e-16 87.0 67 59.7
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 8.4e-16 87.0 67 59.7
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 8.4e-16 87.0 67 58.2
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 8.4e-16 87.0 67 61.2
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.1e-15 86.7 67 58.2
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.1e-15 86.7 67 58.2
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.1e-15 86.7 67 58.2
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.1e-15 86.7 67 55.2
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.1e-15 86.7 67 53.7
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.1e-15 86.7 67 56.7
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.4e-15 86.3 67 59.7
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 1.4e-15 86.3 67 55.2
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.4e-15 86.3 67 55.2
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.4e-15 86.3 67 55.2
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.4e-15 86.3 67 53.7
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.4e-15 86.3 67 55.2
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.4e-15 86.3 67 55.2
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.4e-15 86.3 67 55.2
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.9e-15 85.9 67 56.7
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 1.9e-15 85.9 67 56.7
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.9e-15 85.9 67 55.2
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.9e-15 85.9 67 56.7
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 56.7
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 55.2
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 56.7
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 56.7
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 56.7
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 58.2
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 58.2
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 55.2
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 55.2
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 55.2
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 56.7
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.5e-15 85.5 67 55.2
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 3.2e-15 85.1 67 56.7
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 3.2e-15 85.1 67 55.2
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.2e-15 85.1 65 56.9
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 4.2e-15 84.7 67 58.2
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 4.2e-15 84.7 67 56.7
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 4.2e-15 84.7 67 56.7
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 4.2e-15 84.7 67 55.2
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 4.2e-15 84.7 67 56.7
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 4.2e-15 84.7 67 56.7
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 4.2e-15 84.7 67 53.7
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.2e-15 84.7 67 56.7
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 5.5e-15 84.3 67 56.7
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 5.5e-15 84.3 67 55.2
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 5.5e-15 84.3 67 55.2
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 7.1e-15 84.0 67 56.7
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 7.1e-15 84.0 67 55.2
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 9.3e-15 83.6 67 55.2
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 9.3e-15 83.6 67 56.7
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 9.3e-15 83.6 67 56.7
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 9.3e-15 83.6 67 55.2
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.2e-14 83.2 67 52.2
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.2e-14 83.2 67 56.7
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 4.6e-14 81.3 64 56.2
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 4.6e-14 81.3 63 55.6
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 4.6e-14 81.3 67 53.7
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.8e-10 69.3 56 53.6
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 2.6e-09 65.5 50 56.0
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 4.2e-07 58.2 49 49.0


User provided reference genes

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