Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 2.2e-223 778.9 418 100.0
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 3.3e-110 402.9 342 59.6
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 8.6e-103 378.3 318 60.1
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 3.9e-95 352.8 382 51.6
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 2.5e-94 350.1 384 53.6
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 3.3e-94 349.7 386 52.6
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 3.3e-94 349.7 384 53.1
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 5.6e-94 349.0 385 50.1
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 5.6e-94 349.0 385 49.6
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 7.3e-94 348.6 384 53.6
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 7.3e-94 348.6 382 50.5
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 1.2e-93 347.8 385 49.4
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 2.1e-93 347.1 382 53.1
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 2.8e-93 346.7 382 51.3
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 4.7e-93 345.9 383 49.9
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 4.7e-93 345.9 382 51.8
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 6.2e-93 345.5 383 49.6
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 6.2e-93 345.5 382 51.8
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 6.2e-93 345.5 382 52.6
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 8.1e-93 345.1 383 52.7
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 8.1e-93 345.1 388 51.8
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 1.1e-92 344.7 388 49.7
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 1.4e-92 344.4 386 50.3
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 1.4e-92 344.4 389 48.6
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 1.8e-92 344.0 382 51.3
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 3.1e-92 343.2 389 51.7
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 4.0e-92 342.8 382 53.1
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 1.2e-91 341.3 401 50.1
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 1.5e-91 340.9 386 51.6
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 3.4e-91 339.7 384 50.8
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 4.4e-91 339.3 403 48.6
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 4.4e-91 339.3 387 50.1
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 5.8e-91 339.0 386 49.0
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 5.8e-91 339.0 382 52.9
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 9.9e-91 338.2 383 50.1
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.7e-90 337.4 386 48.2
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 2.2e-90 337.0 389 51.9
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 2.9e-90 336.7 382 50.0
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 4.9e-90 335.9 396 50.3
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 4.9e-90 335.9 384 51.0
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 4.9e-90 335.9 386 47.9
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 8.4e-90 335.1 382 52.1
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 8.4e-90 335.1 388 51.0
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 8.4e-90 335.1 382 51.0
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 1.4e-89 334.3 392 50.0
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 1.9e-89 334.0 384 49.0
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 2.4e-89 333.6 382 49.2
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 2.4e-89 333.6 385 50.6
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 5.4e-89 332.4 387 50.4
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 7.1e-89 332.0 385 46.5
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 9.3e-89 331.6 382 51.3
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 9.3e-89 331.6 392 50.3
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 1.2e-88 331.3 369 50.9
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.2e-88 331.3 394 47.7
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.6e-88 330.9 389 45.5
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.7e-88 330.1 387 46.8
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 4.6e-88 329.3 333 50.8
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 6.0e-88 328.9 395 46.8
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 1.3e-87 327.8 390 47.2
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 2.3e-87 327.0 393 47.3
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 5.1e-87 325.9 385 47.3
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 8.7e-87 325.1 362 49.4
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 1.1e-86 324.7 382 46.3
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.1e-86 324.7 386 50.5
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 1.5e-86 324.3 390 47.9
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.3e-86 323.2 387 45.0
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 7.3e-86 322.0 385 46.5
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 1.3e-85 321.2 386 46.6
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.3e-85 321.2 311 51.8
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 1.6e-85 320.9 388 44.8
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 3.6e-85 319.7 386 50.0
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 6.2e-85 318.9 334 53.6
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 8.1e-85 318.5 352 52.0
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 1.1e-84 318.2 383 46.2
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 1.1e-84 318.2 386 49.7
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 1.1e-84 318.2 388 49.2
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 4.0e-84 316.2 388 45.9
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 1.5e-83 314.3 376 50.3
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 2.0e-83 313.9 428 42.5
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 3.4e-83 313.2 401 48.1
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 5.8e-83 312.4 355 49.3
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.2e-82 310.5 385 46.2
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 4.9e-82 309.3 391 46.0
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 6.4e-82 308.9 336 52.1
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 6.4e-82 308.9 383 46.7
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 1.9e-81 307.4 398 45.5
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 1.9e-81 307.4 393 47.3
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 1.9e-81 307.4 401 45.4
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 1.9e-81 307.4 401 45.4
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 2.4e-81 307.0 374 47.6
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 1.2e-80 304.7 389 45.8
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.6e-80 304.3 437 43.2
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 2.7e-80 303.5 395 45.6
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 2.7e-80 303.5 395 45.6
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 2.7e-80 303.5 401 46.9
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 3.5e-80 303.1 341 49.3
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 4.6e-80 302.8 350 53.1
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 7.9e-80 302.0 383 46.5
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 7.9e-80 302.0 383 46.5
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 1.0e-79 301.6 383 46.7
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 2.3e-79 300.4 383 44.6
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 3.9e-79 299.7 338 52.7
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 6.7e-79 298.9 393 45.3
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 8.7e-79 298.5 383 46.5
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 4.3e-78 296.2 387 46.0
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 9.6e-78 295.0 390 45.9
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 3.7e-77 293.1 388 46.1
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 1.5e-75 287.7 386 45.1
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 2.6e-75 287.0 332 50.9
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.4e-75 286.6 386 44.8
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 9.9e-75 285.0 385 45.5
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 9.9e-75 285.0 383 44.9
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 9.9e-75 285.0 308 52.6
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.3e-74 284.6 383 44.9
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 3.8e-74 283.1 385 44.9
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 4.2e-73 279.6 332 48.5
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.5e-72 276.6 402 40.3
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 7.9e-72 275.4 383 42.3
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 1.8e-71 274.2 290 52.4
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 3.9e-71 273.1 383 44.9
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 5.6e-70 269.2 329 49.8
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 1.6e-69 267.7 329 45.9
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 1.3e-63 248.1 144 76.4
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 9.7e-62 241.9 144 76.4
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 1.3e-58 231.5 365 39.2
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.9e-57 227.6 415 37.1
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.4e-55 221.5 333 41.4
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 6.9e-52 209.1 331 37.2
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 8.5e-50 202.2 305 44.6
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.5e-46 191.4 99 81.8
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 2.6e-46 190.7 295 45.1
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 2.8e-45 187.2 298 38.3
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 3.4e-43 180.3 106 74.5
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 2.9e-42 177.2 268 43.3
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 4.5e-35 153.3 90 74.4
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 1.7e-34 151.4 90 72.2
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 3.6e-32 143.7 272 37.9
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.8e-29 134.0 143 46.2
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 6.3e-29 132.9 162 48.1
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 1.2e-24 118.6 68 72.1
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 9.8e-22 109.0 158 38.6
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.3e-21 108.6 83 65.1
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 5.7e-14 83.2 68 55.9
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 1.7e-10 71.6 37 83.8


User provided reference genes

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