Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 9.0e-184 646.7 317 100.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 4.2e-72 275.8 217 63.1
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 5.1e-70 268.9 237 57.8
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 8.7e-70 268.1 226 58.4
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.5e-69 267.3 232 57.3
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.9e-69 266.9 249 53.8
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 1.9e-69 266.9 249 53.8
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.5e-69 266.5 231 57.1
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 3.3e-69 266.2 231 58.4
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 5.7e-69 265.4 241 55.2
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 5.7e-69 265.4 195 64.6
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 7.4e-69 265.0 228 57.9
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 9.6e-69 264.6 197 65.5
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 1.3e-68 264.2 195 64.6
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 2.8e-68 263.1 197 61.4
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 4.8e-68 262.3 229 58.5
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 6.3e-68 261.9 195 63.6
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 6.3e-68 261.9 195 65.1
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 6.3e-68 261.9 195 62.1
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 8.2e-68 261.5 230 57.0
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 8.2e-68 261.5 229 57.6
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 8.2e-68 261.5 201 62.2
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 1.1e-67 261.2 195 64.6
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.1e-67 261.2 195 62.1
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.1e-67 261.2 229 56.8
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.1e-67 261.2 200 61.0
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.4e-67 260.8 195 63.1
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.8e-67 260.4 229 58.1
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.8e-67 260.4 195 61.5
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 2.4e-67 260.0 229 55.9
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 2.4e-67 260.0 195 62.1
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 2.4e-67 260.0 195 63.6
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 2.4e-67 260.0 227 55.9
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.1e-67 259.6 198 63.1
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 3.1e-67 259.6 202 61.9
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 3.1e-67 259.6 197 63.5
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.1e-67 259.2 219 58.0
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 5.3e-67 258.8 194 61.9
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 5.3e-67 258.8 201 61.7
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 5.3e-67 258.8 229 56.3
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 6.9e-67 258.5 229 57.2
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 6.9e-67 258.5 207 59.9
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 6.9e-67 258.5 195 62.1
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.2e-66 257.7 195 64.1
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 1.2e-66 257.7 195 62.1
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 1.2e-66 257.7 197 60.9
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 1.5e-66 257.3 195 62.6
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 1.5e-66 257.3 201 61.7
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.0e-66 256.9 203 60.6
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.0e-66 256.9 236 55.1
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 2.0e-66 256.9 195 61.5
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 2.0e-66 256.9 195 62.1
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 2.6e-66 256.5 201 61.2
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 2.6e-66 256.5 195 62.1
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 3.4e-66 256.1 195 63.1
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.5e-66 255.8 195 63.1
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 4.5e-66 255.8 195 62.1
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 4.5e-66 255.8 195 61.0
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 5.9e-66 255.4 234 54.3
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 7.6e-66 255.0 195 62.1
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.0e-65 254.6 231 55.8
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 1.0e-65 254.6 195 62.1
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 1.3e-65 254.2 195 60.0
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 1.3e-65 254.2 232 54.7
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.3e-65 254.2 232 54.7
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.3e-65 254.2 195 61.5
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 1.7e-65 253.8 201 59.7
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.7e-65 253.8 195 61.0
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.7e-65 253.8 202 58.4
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 2.2e-65 253.4 195 60.5
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 2.9e-65 253.1 209 56.9
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 2.9e-65 253.1 195 59.5
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 3.8e-65 252.7 209 57.4
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 3.8e-65 252.7 209 57.4
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 3.8e-65 252.7 184 64.7
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 5.0e-65 252.3 209 56.9
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 6.5e-65 251.9 195 59.0
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 6.5e-65 251.9 195 59.5
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 6.5e-65 251.9 204 60.3
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 6.5e-65 251.9 184 64.7
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 8.5e-65 251.5 195 61.5
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.1e-64 251.1 195 60.5
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.1e-64 251.1 219 55.7
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 1.1e-64 251.1 195 60.5
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.9e-64 250.4 243 52.3
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 1.9e-64 250.4 225 54.7
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 2.5e-64 250.0 228 55.3
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 3.2e-64 249.6 197 58.4
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 3.2e-64 249.6 195 60.0
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 3.2e-64 249.6 195 60.0
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 4.2e-64 249.2 208 58.7
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 5.5e-64 248.8 231 51.1
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 7.2e-64 248.4 191 62.3
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 9.3e-64 248.1 228 53.9
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 1.6e-63 247.3 233 54.5
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.6e-63 247.3 231 50.6
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 7.9e-63 245.0 195 59.5
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.0e-62 244.6 195 57.4
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.3e-62 243.4 183 62.3
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 2.3e-62 243.4 204 60.3
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 2.3e-62 243.4 221 56.1
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 3.0e-62 243.0 190 60.5
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.0e-62 243.0 229 50.7
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 3.9e-62 242.7 209 56.5
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 3.9e-62 242.7 195 60.5
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 1.1e-61 241.1 223 56.5
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.1e-61 241.1 214 55.6
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.5e-61 240.7 187 61.0
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 2.5e-61 240.0 189 59.8
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 4.3e-61 239.2 200 59.0
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 7.4e-61 238.4 193 58.5
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 2.2e-60 236.9 210 56.2
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.8e-60 236.5 218 53.2
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.1e-59 234.6 226 52.7
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 3.1e-59 233.0 211 55.9
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.7e-57 227.3 213 52.6
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 1.9e-56 223.8 192 58.9
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 2.7e-55 219.9 200 55.5
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 9.7e-53 211.5 195 52.8
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 3.6e-47 193.0 129 69.0
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 6.7e-46 188.7 203 46.3
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.8e-43 180.6 142 59.9
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 2.9e-41 173.3 139 62.6
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 3.2e-40 169.9 100 76.0
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 4.5e-34 149.4 86 77.9
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 3.2e-32 143.3 149 47.7
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 5.7e-29 132.5 178 42.7
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 4.8e-28 129.4 81 76.5
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 6.1e-23 112.5 132 49.2
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.2e-18 98.2 70 62.9
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 7.5e-13 79.0 58 65.5
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 1.7e-12 77.8 176 29.5
SEGI_05196 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 7.0e-11 72.4 48 70.8
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 2.0e-10 70.9 181 31.5
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 5.6e-08 62.8 43 60.5
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.8e-06 55.8 70 35.7


User provided reference genes

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