Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03447 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 1.9e-53 212.2 104 100.0
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 1.6e-17 92.8 54 87.0
SEGI_07166 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 2.8e-17 92.0 52 90.4
SEGI_16832 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 2.8e-17 92.0 50 94.0
SEGI_07779 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 6.3e-17 90.9 50 92.0
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.2e-17 90.5 50 92.0
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.8e-16 89.4 50 90.0
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.1e-16 88.2 50 88.0
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 5.3e-16 87.8 50 88.0
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 1.3e-14 83.2 50 78.0
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 1.7e-14 82.8 54 74.1
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 2.9e-14 82.0 54 74.1
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 2.9e-14 82.0 54 74.1
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 2.9e-14 82.0 54 74.1
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 2.9e-14 82.0 54 74.1
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 3.8e-14 81.6 54 74.1
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 5.0e-14 81.3 54 72.2
BcaC05g26647 Brassica carinata HOM05D000832 ORTHO05D000982 5.0e-14 81.3 54 72.2
BcaNung06368 Brassica carinata HOM05D000832 ORTHO05D000982 5.0e-14 81.3 54 72.2
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 5.0e-14 81.3 54 72.2
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 5.0e-14 81.3 54 72.2
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 5.0e-14 81.3 54 72.2
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 5.0e-14 81.3 54 72.2
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 5.0e-14 81.3 54 74.1
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 6.5e-14 80.9 54 72.2
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 6.5e-14 80.9 54 72.2
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 1.1e-13 80.1 54 72.2
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 1.1e-13 80.1 54 72.2
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 1.1e-13 80.1 54 72.2
Cpa.g.sc1.236 Carica papaya HOM05D000832 ORTHO05D000982 1.4e-13 79.7 54 72.2
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 1.4e-13 79.7 54 72.2
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 1.4e-13 79.7 74 56.8
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 1.9e-13 79.3 54 72.2
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 2.5e-13 79.0 54 72.2
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 2.5e-13 79.0 54 72.2
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 2.5e-13 79.0 54 70.4
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 2.5e-13 79.0 78 55.1
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 3.2e-13 78.6 54 68.5
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 3.2e-13 78.6 54 70.4
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 3.2e-13 78.6 54 70.4
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 4.2e-13 78.2 54 70.4
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 4.2e-13 78.2 69 60.9
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 5.5e-13 77.8 50 74.0
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 5.5e-13 77.8 54 70.4
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 5.5e-13 77.8 74 56.8
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 7.2e-13 77.4 54 70.4
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 7.2e-13 77.4 54 70.4
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 7.2e-13 77.4 54 70.4
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 7.2e-13 77.4 74 55.4
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 7.2e-13 77.4 74 55.4
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 7.2e-13 77.4 54 70.4
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 7.2e-13 77.4 54 68.5
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 7.2e-13 77.4 55 67.3
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 9.4e-13 77.0 55 67.3
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 9.4e-13 77.0 74 56.8
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 9.4e-13 77.0 54 70.4
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 1.2e-12 76.6 54 68.5
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 1.2e-12 76.6 54 70.4
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 1.2e-12 76.6 54 68.5
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 1.2e-12 76.6 54 70.4
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 1.6e-12 76.3 54 68.5
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 1.6e-12 76.3 54 68.5
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 2.1e-12 75.9 54 68.5
Medtr1g094010 Medicago truncatula HOM05D000832 ORTHO05D000982 2.1e-12 75.9 54 68.5
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 2.1e-12 75.9 54 68.5
TPR.G9800 Trifolium pratense HOM05D000832 ORTHO05D000982 2.1e-12 75.9 54 68.5
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 2.7e-12 75.5 54 70.4
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 2.7e-12 75.5 54 68.5
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 2.7e-12 75.5 54 68.5
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 4.6e-12 74.7 54 68.5
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 4.6e-12 74.7 54 68.5
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 4.6e-12 74.7 54 66.7
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 4.6e-12 74.7 50 72.0
SMO146G0010 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 4.6e-12 74.7 54 68.5
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 6.1e-12 74.3 54 64.8
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 6.1e-12 74.3 74 55.4
arahy.Tifrunner.gnm1.ann1.7GR9X4 Arachis hypogaea HOM05D000832 ORTHO05D013013 7.9e-12 73.9 50 72.0
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 7.9e-12 73.9 54 68.5
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 1.0e-11 73.6 54 66.7
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 1.0e-11 73.6 54 66.7
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 1.4e-11 73.2 67 61.2
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 1.4e-11 73.2 54 64.8
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 1.4e-11 73.2 54 64.8
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 1.4e-11 73.2 54 63.0
Glyma.02G118180 Glycine max HOM05D000832 ORTHO05D013013 1.8e-11 72.8 54 64.8
Glyma.02G118228 Glycine max HOM05D000832 ORTHO05D013013 1.8e-11 72.8 54 64.8
Glyma.02G130896 Glycine max HOM05D000832 ORTHO05D013013 1.8e-11 72.8 54 64.8
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 1.8e-11 72.8 54 66.7
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 1.8e-11 72.8 54 64.8
AagrBONN_evm.TU.Sc2ySwM_344.1213 Anthoceros agrestis HOM05D000832 ORTHO05D000982 2.3e-11 72.4 54 64.8
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 2.3e-11 72.4 54 63.0
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 2.3e-11 72.4 54 63.0
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 2.3e-11 72.4 54 66.7
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 3.9e-11 71.6 54 66.7
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 3.9e-11 71.6 55 61.8
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 3.9e-11 71.6 54 66.7
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 3.9e-11 71.6 54 66.7
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 3.9e-11 71.6 54 66.7
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 6.7e-11 70.9 50 68.0
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 6.7e-11 70.9 54 61.1
Mapoly0033s0016 Marchantia polymorpha HOM05D000832 ORTHO05D000982 6.7e-11 70.9 50 68.0
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 6.7e-11 70.9 50 68.0
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 6.7e-11 70.9 50 68.0
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 6.7e-11 70.9 54 63.0
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 8.8e-11 70.5 54 64.8
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 8.8e-11 70.5 54 64.8
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 1.1e-10 70.1 50 66.0
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 1.1e-10 70.1 50 66.0
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 1.1e-10 70.1 54 64.8
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.1e-10 70.1 54 64.8
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 1.1e-10 70.1 54 63.0
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 1.1e-10 70.1 50 66.0
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 1.5e-10 69.7 67 59.7
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 1.5e-10 69.7 54 61.1
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 1.5e-10 69.7 54 64.8
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 1.5e-10 69.7 54 63.0
SEGI_08791 Sequoiadendron giganteum HOM05D000832 ORTHO05D012435 1.5e-10 69.7 38 92.1
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 2.0e-10 69.3 54 63.0
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 2.0e-10 69.3 54 63.0
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 2.0e-10 69.3 54 64.8
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 2.0e-10 69.3 54 63.0
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 2.0e-10 69.3 54 64.8
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 2.5e-10 68.9 54 63.0
SMO239G0149 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 2.5e-10 68.9 50 68.0
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 4.3e-10 68.2 54 61.1
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 4.3e-10 68.2 54 63.0
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 7.4e-10 67.4 67 55.2
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 7.4e-10 67.4 67 55.2
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 7.4e-10 67.4 55 65.5
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 1.7e-09 66.2 54 63.0
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 1.7e-09 66.2 54 59.3
Os01g0110700 Oryza sativa ssp. japonica HOM05D000832 ORTHO05D000982 1.7e-09 66.2 69 55.1
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 1.7e-09 66.2 54 59.3
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 1.1e-08 63.5 54 59.3
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 3.1e-08 62.0 54 53.7
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 3.1e-08 62.0 54 53.7
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 3.1e-08 62.0 54 53.7
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 3.1e-08 62.0 54 53.7
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 3.1e-08 62.0 54 53.7
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 3.1e-08 62.0 54 57.4
unitig_27.g25235 Utricularia gibba HOM05D000832 ORTHO05D000982 3.1e-08 62.0 54 53.7
CBR_g51455 Chara braunii HOM05D011303 ORTHO05D012435 1.5e-07 59.7 46 60.9


User provided reference genes

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