Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03347 Sequoiadendron giganteum HOM05D000126 ORTHO05D386853 1.3e-111 406.4 195 100.0
SEGI_35559 Sequoiadendron giganteum HOM05D000725 ORTHO05D002005 1.3e-26 124.0 75 78.7
SEGI_29271 Sequoiadendron giganteum HOM05D000126 ORTHO05D007739 4.3e-19 99.0 55 85.5
SEGI_09703 Sequoiadendron giganteum HOM05D000126 ORTHO05D000085 1.1e-11 74.3 49 73.5
SEGI_11447 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 3.3e-11 72.8 55 58.2
Dinv25312 Davidia involucrata HOM05D000126 ORTHO05D000085 1.2e-08 64.3 59 54.2
Dinv25308 Davidia involucrata HOM05D000126 ORTHO05D000085 1.5e-08 63.9 59 54.2
Aqoxy3G03211 Aquilegia oxysepala HOM05D000126 ORTHO05D000085 2.0e-08 63.5 79 43.0
Medtr6g009540 Medicago truncatula HOM05D000126 ORTHO05D000085 2.0e-08 63.5 55 58.2
Aqoxy3G03210 Aquilegia oxysepala HOM05D000126 ORTHO05D000085 7.6e-08 61.6 52 57.7
TPR.G4264 Trifolium pratense HOM05D000126 ORTHO05D000085 1.7e-07 60.5 55 54.5
SEGI_28924 Sequoiadendron giganteum HOM05D000126 ORTHO05D000085 2.9e-07 59.7 51 58.8
HanXRQChr09g0252301 Helianthus annuus HOM05D000126 ORTHO05D000085 3.8e-07 59.3 61 52.5
Lj5A323T75 Lonicera japonica HOM05D000126 ORTHO05D000085 4.9e-07 58.9 62 51.6
vmacro05769 Vaccinium macrocarpon HOM05D000126 ORTHO05D000085 4.9e-07 58.9 58 55.2
Duzib187G0348 Durio zibethinus HOM05D000126 ORTHO05D000085 6.5e-07 58.5 45 60.0
Lj1g0003056 Lotus japonicus HOM05D000126 ORTHO05D000085 6.5e-07 58.5 112 32.1
PSO832G2563 Papaver somniferum HOM05D000126 ORTHO05D000085 6.5e-07 58.5 59 47.5
Eucgr.J02150 Eucalyptus grandis HOM05D000126 ORTHO05D000085 8.4e-07 58.2 63 50.8
Eucgr.L03241 Eucalyptus grandis HOM05D000126 ORTHO05D000085 8.4e-07 58.2 63 50.8
arahy.Tifrunner.gnm1.ann1.1W4SSV Arachis hypogaea HOM05D000126 ORTHO05D000085 1.1e-06 57.8 44 61.4
arahy.Tifrunner.gnm1.ann1.J5PUD3 Arachis hypogaea HOM05D000126 ORTHO05D000085 1.1e-06 57.8 44 61.4
CARHR286700 Cardamine hirsuta HOM05D000126 ORTHO05D000085 1.1e-06 57.8 50 56.0
Medtr6g009520 Medicago truncatula HOM05D000126 ORTHO05D000085 1.1e-06 57.8 44 61.4
PGR142G3595 Punica granatum HOM05D000126 ORTHO05D000085 1.1e-06 57.8 45 62.2
TPR.G7128 Trifolium pratense HOM05D000126 ORTHO05D000085 1.1e-06 57.8 50 54.0
CSS0002097 Camellia sinensis var. sinensis HOM05D000126 ORTHO05D000085 1.4e-06 57.4 52 51.9
ECA240G0641 Erigeron canadensis HOM05D000126 ORTHO05D000085 1.4e-06 57.4 61 50.8
Lsat_1_v5_gn_4_180220 Lactuca sativa HOM05D000126 ORTHO05D000085 1.4e-06 57.4 57 47.4
Eucgr.L00790 Eucalyptus grandis HOM05D000126 ORTHO05D000085 1.9e-06 57.0 63 50.8
Lj5A323T73 Lonicera japonica HOM05D000126 ORTHO05D000085 1.9e-06 57.0 62 46.8
Lj5A323T74 Lonicera japonica HOM05D000126 ORTHO05D000085 1.9e-06 57.0 52 55.8
Psat1g076680 Pisum sativum HOM05D000126 ORTHO05D000085 1.9e-06 57.0 60 50.0
Psat1g076720 Pisum sativum HOM05D000126 ORTHO05D000085 1.9e-06 57.0 60 50.0
Carub.0005s0715 Capsella rubella HOM05D000126 ORTHO05D000085 2.5e-06 56.6 48 56.2
CARHR262090 Cardamine hirsuta HOM05D000126 ORTHO05D000085 2.5e-06 56.6 51 51.0
Cpa.g.sc14.57 Carica papaya HOM05D000126 ORTHO05D000085 2.5e-06 56.6 52 50.0
ECA240G0001 Erigeron canadensis HOM05D000126 ORTHO05D000085 2.5e-06 56.6 57 52.6
Hma1.2p1_0589F.1_g184850 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 2.5e-06 56.6 52 57.7
Actinidia04940 Actinidia chinensis HOM05D000126 ORTHO05D000085 3.2e-06 56.2 52 50.0
BcaC06g30909 Brassica carinata HOM05D000126 ORTHO05D000085 3.2e-06 56.2 39 66.7
A06p40430 Brassica napus HOM05D000126 ORTHO05D000085 3.2e-06 56.2 39 66.7
BraA06t26961Z Brassica rapa HOM05D000126 ORTHO05D000085 3.2e-06 56.2 39 66.7
CANSAT64G1110 Cannabis sativa HOM05D000126 ORTHO05D000085 3.2e-06 56.2 55 47.3
Duzib264G0818 Durio zibethinus HOM05D000126 ORTHO05D000085 3.2e-06 56.2 50 56.0
Eucgr.J02147 Eucalyptus grandis HOM05D000126 ORTHO05D000085 3.2e-06 56.2 57 54.4
Eucgr.J02148 Eucalyptus grandis HOM05D000126 ORTHO05D000085 3.2e-06 56.2 57 54.4
Gohir.D09G022100 Gossypium hirsutum HOM05D000126 ORTHO05D000085 3.2e-06 56.2 60 51.7
Lalb_Chr02g0159961 Lupinus albus HOM05D000126 ORTHO05D000085 3.2e-06 56.2 62 48.4
Lalb_Chr02g0160151 Lupinus albus HOM05D000126 ORTHO05D000085 3.2e-06 56.2 62 48.4
Potri.012G072300 Populus trichocarpa HOM05D000126 ORTHO05D000085 3.2e-06 56.2 50 50.0
Prupe.3G274200 Prunus persica HOM05D000126 ORTHO05D000085 3.2e-06 56.2 45 53.3
SalBow2G2561 Salvia bowleyana HOM05D000126 ORTHO05D000085 3.2e-06 56.2 54 48.1
THA.LOC104826644 Tarenaya hassleriana HOM05D000126 ORTHO05D000085 3.2e-06 56.2 56 44.6
Ciclev10011449m.g Citrus clementina HOM05D000126 ORTHO05D000085 4.2e-06 55.8 60 48.3
Migut.H02520 Erythranthe guttata HOM05D000126 ORTHO05D000085 4.2e-06 55.8 45 55.6
Glyma.09G241600 Glycine max HOM05D000126 ORTHO05D000085 4.2e-06 55.8 54 51.9
Glyma.18G254200 Glycine max HOM05D000126 ORTHO05D000085 4.2e-06 55.8 54 51.9
Gorai.006G026000 Gossypium raimondii HOM05D000126 ORTHO05D000085 4.2e-06 55.8 60 51.7
Lj5A322T69 Lonicera japonica HOM05D000126 ORTHO05D000085 4.2e-06 55.8 52 53.8
Manes.15G175500 Manihot esculenta HOM05D000126 ORTHO05D000085 4.2e-06 55.8 56 50.0
PGR083G0824 Punica granatum HOM05D000126 ORTHO05D000085 4.2e-06 55.8 64 45.3
AL5G18230 Arabidopsis lyrata HOM05D000126 ORTHO05D000085 5.5e-06 55.5 39 66.7
AT3G28580 Arabidopsis thaliana HOM05D000126 ORTHO05D000085 5.5e-06 55.5 39 66.7
BcaC04g23871 Brassica carinata HOM05D000126 ORTHO05D000085 5.5e-06 55.5 49 53.1
BcaC04g23937 Brassica carinata HOM05D000126 ORTHO05D000085 5.5e-06 55.5 49 53.1
A09p03720 Brassica napus HOM05D000126 ORTHO05D000085 5.5e-06 55.5 49 53.1
C09p03910 Brassica napus HOM05D000126 ORTHO05D000085 5.5e-06 55.5 49 53.1
BolC9t53241H Brassica oleracea HOM05D000126 ORTHO05D000085 5.5e-06 55.5 49 53.1
BolC9t53318H Brassica oleracea HOM05D000126 ORTHO05D000085 5.5e-06 55.5 49 53.1
BraA09t36006Z Brassica rapa HOM05D000126 ORTHO05D000085 5.5e-06 55.5 49 53.1
CSS0011492 Camellia sinensis var. sinensis HOM05D000126 ORTHO05D000085 5.5e-06 55.5 57 45.6
Carub.0007s3565 Capsella rubella HOM05D000126 ORTHO05D000085 5.5e-06 55.5 55 50.9
Eucgr.J02151 Eucalyptus grandis HOM05D000126 ORTHO05D000085 5.5e-06 55.5 61 49.2
Eucgr.L00795 Eucalyptus grandis HOM05D000126 ORTHO05D000085 5.5e-06 55.5 63 49.2
Eucgr.L00796 Eucalyptus grandis HOM05D000126 ORTHO05D000085 5.5e-06 55.5 63 49.2
Hma1.2p1_0115F.1_g055960 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 5.5e-06 55.5 54 50.0
Hma1.2p1_0349F.1_g131990 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 5.5e-06 55.5 53 58.5
Hma1.2p1_0375F.1_g138830 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 5.5e-06 55.5 46 58.7
Hma1.2p1_2624F.1_g325623 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 5.5e-06 55.5 53 58.5
Thecc.04G071900 Theobroma cacao HOM05D000126 ORTHO05D000085 5.5e-06 55.5 45 55.6
Aqoxy4G02447 Aquilegia oxysepala HOM05D000126 ORTHO05D000085 7.1e-06 55.1 52 48.1
arahy.Tifrunner.gnm1.ann1.PTPQ36 Arachis hypogaea HOM05D000126 ORTHO05D000085 7.1e-06 55.1 44 56.8
BcaC06g33628 Brassica carinata HOM05D000126 ORTHO05D000085 7.1e-06 55.1 37 67.6
C07p37600 Brassica napus HOM05D000126 ORTHO05D000085 7.1e-06 55.1 37 67.6
BolC7t44275H Brassica oleracea HOM05D000126 ORTHO05D000085 7.1e-06 55.1 37 67.6
CSS0009863 Camellia sinensis var. sinensis HOM05D000126 ORTHO05D000085 7.1e-06 55.1 48 52.1
CANSAT64G1097 Cannabis sativa HOM05D000126 ORTHO05D000085 7.1e-06 55.1 59 44.1
ClCG10G014750 Citrullus lanatus HOM05D000126 ORTHO05D000085 7.1e-06 55.1 53 49.1
COL.COLO4_08708 Corchorus olitorius HOM05D000126 ORTHO05D000085 7.1e-06 55.1 45 55.6
Dinv19898 Davidia involucrata HOM05D000777 ORTHO05D000595 7.1e-06 55.1 56 48.2
Migut.K00118 Erythranthe guttata HOM05D000126 ORTHO05D000085 7.1e-06 55.1 52 50.0
Gohir.A07G216500 Gossypium hirsutum HOM05D000126 ORTHO05D000085 7.1e-06 55.1 53 50.9
Gohir.D07G223300 Gossypium hirsutum HOM05D000126 ORTHO05D000085 7.1e-06 55.1 53 50.9
Gorai.001G257600 Gossypium raimondii HOM05D000126 ORTHO05D000085 7.1e-06 55.1 53 50.9
Lj5C323G9 Lonicera japonica HOM05D000126 ORTHO05D000085 7.1e-06 55.1 59 47.5
Lj5C324T1 Lonicera japonica HOM05D000126 ORTHO05D000085 7.1e-06 55.1 52 53.8
MD17G1045300 Malus domestica HOM05D000126 ORTHO05D000085 7.1e-06 55.1 45 55.6
Oeu006924.1 Olea europaea HOM05D000126 ORTHO05D000085 7.1e-06 55.1 54 51.9
Potri.019G020800 Populus trichocarpa HOM05D000126 ORTHO05D000085 7.1e-06 55.1 61 44.3
RcHm_v2.0_Chr2g0100761 Rosa chinensis HOM05D000126 ORTHO05D000085 7.1e-06 55.1 31 74.2
Sabra12G0051600 Salix brachista HOM05D000126 ORTHO05D000085 7.1e-06 55.1 52 48.1
Hund16449 Selenicereus undatus HOM05D000126 ORTHO05D000085 7.1e-06 55.1 51 49.0
Thecc.04G071500 Theobroma cacao HOM05D000126 ORTHO05D000085 7.1e-06 55.1 55 49.1
TPR.G4351 Trifolium pratense HOM05D000126 ORTHO05D000085 7.1e-06 55.1 43 55.8
Actinidia06056 Actinidia chinensis HOM05D000126 ORTHO05D000085 9.3e-06 54.7 46 58.7
BcaB04g19471 Brassica carinata HOM05D000126 ORTHO05D000085 9.3e-06 54.7 39 64.1
BcaC03g13328 Brassica carinata HOM05D000126 ORTHO05D000085 9.3e-06 54.7 50 54.0
BolC2t06422H Brassica oleracea HOM05D000126 ORTHO05D000085 9.3e-06 54.7 50 54.0
CANSAT01G0037 Cannabis sativa HOM05D000126 ORTHO05D000085 9.3e-06 54.7 33 72.7
CAN.G248.12 Capsicum annuum HOM05D000126 ORTHO05D000085 9.3e-06 54.7 34 67.6
CAN.G248.15 Capsicum annuum HOM05D000126 ORTHO05D000085 9.3e-06 54.7 34 67.6
CAN.G248.17 Capsicum annuum HOM05D000126 ORTHO05D000085 9.3e-06 54.7 34 67.6
CAN.G851.2 Capsicum annuum HOM05D000126 ORTHO05D000085 9.3e-06 54.7 34 67.6
AUR62018309 Chenopodium quinoa HOM05D000126 ORTHO05D000085 9.3e-06 54.7 54 48.1
Ciclev10011614m.g Citrus clementina HOM05D000126 ORTHO05D000085 9.3e-06 54.7 56 50.0
Ciclev10019846m.g Citrus clementina HOM05D000126 ORTHO05D000085 9.3e-06 54.7 61 45.9
Cc00_g20120 Coffea canephora HOM05D000126 ORTHO05D000085 9.3e-06 54.7 53 49.1
COL.COLO4_08710 Corchorus olitorius HOM05D000126 ORTHO05D000085 9.3e-06 54.7 51 51.0
Eucgr.K02905 Eucalyptus grandis HOM05D000126 ORTHO05D000085 9.3e-06 54.7 61 49.2
Thhalv10005338m.g Eutrema salsugineum HOM05D000126 ORTHO05D000085 9.3e-06 54.7 37 67.6
Gohir.D11G072100 Gossypium hirsutum HOM05D000126 ORTHO05D000085 9.3e-06 54.7 62 43.5
Gorai.007G078300 Gossypium raimondii HOM05D000126 ORTHO05D000085 9.3e-06 54.7 55 43.6
HanXRQChr03g0082111 Helianthus annuus HOM05D000126 ORTHO05D000085 9.3e-06 54.7 60 50.0
Lalb_Chr02g0159401 Lupinus albus HOM05D000126 ORTHO05D000085 9.3e-06 54.7 61 49.2
MD09G1043900 Malus domestica HOM05D000126 ORTHO05D000085 9.3e-06 54.7 66 42.4
Manes.06G098000 Manihot esculenta HOM05D000126 ORTHO05D000085 9.3e-06 54.7 55 50.9
PSO832G4063 Papaver somniferum HOM05D000126 ORTHO05D000085 9.3e-06 54.7 42 61.9
Prupe.3G273900 Prunus persica HOM05D000126 ORTHO05D000085 9.3e-06 54.7 45 55.6
Prupe.3G274100 Prunus persica HOM05D000126 ORTHO05D000085 9.3e-06 54.7 45 55.6
QL02p079713 Quercus lobata HOM05D000126 ORTHO05D000085 9.3e-06 54.7 58 48.3
Rhsim10G0029800 Rhododendron simsii HOM05D000126 ORTHO05D000085 9.3e-06 54.7 54 50.0
SalBow1G6160 Salvia bowleyana HOM05D000126 ORTHO05D000085 9.3e-06 54.7 37 64.9
Sp2g05960 Schrenkiella parvula HOM05D000126 ORTHO05D000085 9.3e-06 54.7 37 67.6
Sc07g0000840 Simmondsia chinensis HOM05D000126 ORTHO05D000085 9.3e-06 54.7 33 75.8
Solyc10g079630.1 Solanum lycopersicum HOM05D000126 ORTHO05D000085 9.3e-06 54.7 50 54.0


User provided reference genes

Program Settings