Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03320 Sequoiadendron giganteum HOM05D000237 ORTHO05D386575 8.3e-81 303.5 141 100.0
SEGI_25987 Sequoiadendron giganteum HOM05D000237 ORTHO05D000535 1.0e-17 94.0 87 57.5
Gohir.A11G261100 Gossypium hirsutum HOM05D000237 ORTHO05D000535 6.5e-09 64.7 87 43.7
Gohir.D11G271333 Gossypium hirsutum HOM05D000237 ORTHO05D000535 6.5e-09 64.7 87 43.7
Gorai.007G291900 Gossypium raimondii HOM05D000237 ORTHO05D000535 6.5e-09 64.7 87 43.7
Duzib177G0950 Durio zibethinus HOM05D000237 ORTHO05D000535 4.2e-08 62.0 69 46.4
COL.COLO4_13556 Corchorus olitorius HOM05D001540 ORTHO05D001520 2.7e-07 59.3 84 41.7
Lalb_Chr02g0148451 Lupinus albus HOM05D000237 ORTHO05D000535 3.6e-07 58.9 78 37.2
Thecc.05G298300 Theobroma cacao HOM05D000237 ORTHO05D000535 3.6e-07 58.9 69 43.5
CiPaw.07G097900 Carya illinoinensis HOM05D000237 ORTHO05D000535 4.7e-07 58.5 69 40.6
TAR365G0606 Trochodendron aralioides HOM05D000237 ORTHO05D000535 4.7e-07 58.5 67 44.8
Gohir.A11G296200 Gossypium hirsutum HOM05D000237 ORTHO05D000535 6.1e-07 58.2 69 44.9
Gohir.D11G310700 Gossypium hirsutum HOM05D000237 ORTHO05D000535 6.1e-07 58.2 69 44.9
Gorai.007G343100 Gossypium raimondii HOM05D000237 ORTHO05D000535 6.1e-07 58.2 69 44.9
Lalb_Chr21g0310801 Lupinus albus HOM05D000237 ORTHO05D000535 6.1e-07 58.2 78 38.5
Sp6g19360 Schrenkiella parvula HOM05D000237 ORTHO05D000535 8.0e-07 57.8 71 40.8
BcaB08g36125 Brassica carinata HOM05D000237 ORTHO05D000535 1.4e-06 57.0 71 40.8
Ciclev10001189m.g Citrus clementina HOM05D000237 ORTHO05D000535 1.4e-06 57.0 69 44.9
Prupe.6G332300 Prunus persica HOM05D000237 ORTHO05D000535 1.4e-06 57.0 69 43.5
Aa31LG3G13510 Aethionema arabicum HOM05D000237 ORTHO05D000535 1.8e-06 56.6 71 39.4
Cpa.g.sc16.81 Carica papaya HOM05D000237 ORTHO05D000535 1.8e-06 56.6 69 43.5
Glyma.20G231000 Glycine max HOM05D000237 ORTHO05D000535 1.8e-06 56.6 87 37.9
VMungo0540G1240 Vigna mungo HOM05D000237 ORTHO05D000535 2.3e-06 56.2 79 41.8
CSS0004301 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 3.0e-06 55.8 69 40.6
Atru.chr2.523 Acer truncatum HOM05D000237 ORTHO05D000535 4.0e-06 55.5 91 37.4
CSS0025087 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 4.0e-06 55.5 69 40.6
Cfa006526 Carpinus fangiana HOM05D000237 ORTHO05D000535 4.0e-06 55.5 66 45.5
CiPaw.08G167800 Carya illinoinensis HOM05D000237 ORTHO05D000535 4.0e-06 55.5 81 39.5
Lj1g0018063 Lotus japonicus HOM05D000237 ORTHO05D000535 4.0e-06 55.5 71 36.6
AT5G57670 Arabidopsis thaliana HOM05D000237 ORTHO05D000535 5.2e-06 55.1 71 40.8
Carub.0008s1818 Capsella rubella HOM05D000237 ORTHO05D000535 5.2e-06 55.1 71 40.8
AL8G33700 Arabidopsis lyrata HOM05D000237 ORTHO05D000535 6.7e-06 54.7 71 39.4
Ca_10082_v3 Cicer arietinum L. HOM05D000237 ORTHO05D000535 6.7e-06 54.7 50 50.0
Glyma.10G157500 Glycine max HOM05D000237 ORTHO05D000535 6.7e-06 54.7 87 36.8
Lalb_Chr18g0046871 Lupinus albus HOM05D000237 ORTHO05D030022 6.7e-06 54.7 69 42.0
Medtr1g082310 Medicago truncatula HOM05D000237 ORTHO05D000535 6.7e-06 54.7 80 41.2
PSO210G1489 Papaver somniferum HOM05D000237 ORTHO05D000535 6.7e-06 54.7 69 40.6
BcaC01g04332 Brassica carinata HOM05D000237 ORTHO05D000535 8.8e-06 54.3 55 47.3
BcaC01g04333 Brassica carinata HOM05D000237 ORTHO05D000535 8.8e-06 54.3 55 47.3
C03p41380 Brassica napus HOM05D000237 ORTHO05D000535 8.8e-06 54.3 55 47.3
CSS0021855 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 8.8e-06 54.3 71 35.2
RcHm_v2.0_Chr3g0453501 Rosa chinensis HOM05D000237 ORTHO05D000535 8.8e-06 54.3 53 43.4


User provided reference genes

Program Settings