Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.1e-45 185.3 88 100.0
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.8e-34 147.5 81 82.7
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.9e-31 137.5 82 73.2
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.1e-30 136.3 88 68.2
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.4e-30 136.0 88 70.5
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.5e-30 135.2 88 70.5
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 3.2e-30 134.8 82 70.7
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 3.2e-30 134.8 82 70.7
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 4.2e-30 134.4 82 70.7
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.5e-30 134.0 88 68.2
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 9.3e-30 133.3 88 67.0
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.2e-29 132.9 85 67.1
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.2e-29 132.9 82 69.5
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.2e-29 132.9 82 70.7
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.6e-29 132.5 88 69.3
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.6e-29 132.5 88 67.0
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 2.1e-29 132.1 85 67.1
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.1e-29 132.1 88 63.6
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.7e-29 131.7 85 65.9
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 3.5e-29 131.3 85 67.1
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 4.6e-29 131.0 88 67.0
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.6e-29 131.0 88 67.0
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 6.0e-29 130.6 82 69.5
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 6.0e-29 130.6 88 67.0
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 6.0e-29 130.6 85 64.7
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 6.0e-29 130.6 85 64.7
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 7.9e-29 130.2 82 67.1
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.0e-28 129.8 82 67.1
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.0e-28 129.8 82 67.1
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.0e-28 129.8 82 67.1
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.0e-28 129.8 88 65.9
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.0e-28 129.8 82 68.3
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.3e-28 129.4 82 68.3
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.3e-28 129.4 82 68.3
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.8e-28 129.0 82 65.9
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.8e-28 129.0 82 65.9
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.8e-28 129.0 88 67.0
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 2.3e-28 128.6 82 65.9
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 2.3e-28 128.6 85 63.5
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 2.3e-28 128.6 88 67.0
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 3.0e-28 128.3 86 64.0
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 3.0e-28 128.3 85 61.2
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 3.0e-28 128.3 85 65.9
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 3.9e-28 127.9 88 65.9
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 3.9e-28 127.9 88 65.9
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 3.9e-28 127.9 82 65.9
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 3.9e-28 127.9 82 67.1
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 5.1e-28 127.5 85 61.2
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 5.1e-28 127.5 88 63.6
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 6.7e-28 127.1 85 64.7
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 6.7e-28 127.1 85 64.7
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 6.7e-28 127.1 82 63.4
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 6.7e-28 127.1 86 64.0
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 8.7e-28 126.7 82 65.9
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 8.7e-28 126.7 82 63.4
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.7e-28 126.7 81 67.9
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.1e-27 126.3 88 63.6
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.1e-27 126.3 80 68.8
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.1e-27 126.3 80 66.2
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-27 125.9 82 64.6
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.5e-27 125.9 85 63.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.5e-27 125.9 82 65.9
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.5e-27 125.9 82 65.9
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.5e-27 125.9 82 65.9
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.5e-27 125.9 82 65.9
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.5e-27 125.9 88 65.9
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.5e-27 125.9 79 65.8
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.5e-27 125.9 79 65.8
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.9e-27 125.6 88 67.0
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.9e-27 125.6 82 63.4
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 2.5e-27 125.2 82 63.4
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.5e-27 125.2 82 67.1
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.3e-27 124.8 81 66.7
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.3e-27 124.8 81 66.7
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.3e-27 124.8 88 64.8
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 3.3e-27 124.8 82 63.4
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 4.3e-27 124.4 82 65.9
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 4.3e-27 124.4 79 67.1
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 5.6e-27 124.0 79 65.8
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 5.6e-27 124.0 88 65.9
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 7.4e-27 123.6 88 62.5
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.6e-27 123.2 79 64.6
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 9.6e-27 123.2 77 67.5
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 9.6e-27 123.2 75 72.0
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 9.6e-27 123.2 82 65.9
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 9.6e-27 123.2 88 64.8
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.3e-26 122.9 88 61.4
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.3e-26 122.9 82 61.0
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.6e-26 122.5 81 66.7
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.6e-26 122.5 82 61.0
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.6e-26 122.5 75 72.0
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 2.1e-26 122.1 88 60.2
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.1e-26 122.1 82 63.4
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.8e-26 121.7 88 60.2
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 2.8e-26 121.7 82 61.0
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 4.8e-26 120.9 80 63.8
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 6.2e-26 120.6 81 65.4
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 6.2e-26 120.6 88 60.2
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 8.2e-26 120.2 88 59.1
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.1e-25 119.8 77 63.6
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.4e-25 119.4 79 65.8
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.4e-25 119.4 78 62.8
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.4e-25 118.6 86 60.5
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 3.1e-25 118.2 81 64.2
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.1e-25 118.2 87 66.7
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.1e-25 118.2 79 63.3
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.1e-25 118.2 79 63.3
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 5.3e-25 117.5 79 63.3
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.5e-24 115.9 88 58.0
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.0e-24 115.5 85 67.1
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 3.4e-24 114.8 82 57.3
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 3.4e-24 114.8 88 56.8
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 3.4e-24 114.8 82 57.3
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 5.8e-24 114.0 73 68.5
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 7.6e-24 113.6 85 54.1
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 7.6e-24 113.6 85 54.1
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 7.6e-24 113.6 85 54.1
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 7.6e-24 113.6 85 54.1
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.6e-24 113.6 82 62.2
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 7.6e-24 113.6 79 60.8
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.7e-23 112.5 85 54.1
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.7e-23 112.5 85 54.1
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.7e-23 112.5 82 56.1
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.7e-23 112.5 82 56.1
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.9e-23 111.7 77 57.1
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 6.5e-23 110.5 76 63.2
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 8.4e-23 110.2 81 55.6
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 4.2e-22 107.8 78 61.5
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 9.3e-22 106.7 86 53.5
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 4.6e-21 104.4 79 57.0
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.0e-20 103.2 78 60.3
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.1e-19 99.8 83 53.0
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 7.4e-19 97.1 73 57.5
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.3e-18 96.3 67 65.7
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 2.4e-17 92.0 59 71.2
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.4e-17 92.0 87 52.9
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-15 85.5 67 56.7
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.5e-14 82.0 46 73.9
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 3.2e-14 81.6 46 73.9
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 3.2e-14 81.6 46 73.9
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 7.2e-14 80.5 47 74.5
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 2.7e-13 78.6 47 66.0
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 7.9e-13 77.0 74 44.6
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 7.9e-13 77.0 46 71.7
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 3.0e-12 75.1 45 68.9
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 8.8e-12 73.6 80 43.8
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.5e-11 72.8 46 69.6
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 4.3e-11 71.2 84 39.3
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.7e-10 69.3 46 63.0
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.4e-09 66.2 46 65.2
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.4e-09 66.2 46 65.2
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 1.8e-09 65.9 45 60.0
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.1e-09 63.5 45 60.0
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.0e-07 60.1 43 65.1
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 6.5e-07 57.4 45 51.1
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 1.1e-06 56.6 37 62.2


User provided reference genes

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