Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.8e-50 202.2 97 100.0
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 4.8e-11 71.2 93 43.0
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.4e-10 68.9 90 41.1
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 4.1e-10 68.2 60 50.0
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 4.1e-10 68.2 78 41.0
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 6.9e-10 67.4 66 45.5
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 1.2e-09 66.6 62 48.4
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 1.2e-09 66.6 82 41.5
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 1.2e-09 66.6 96 38.5
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.5e-09 66.2 66 45.5
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.5e-09 66.2 90 34.4
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 3.4e-09 65.1 43 60.5
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 5.9e-09 64.3 79 41.8
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 7.6e-09 63.9 71 39.4
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 7.6e-09 63.9 66 43.9
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 7.6e-09 63.9 66 43.9
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 7.6e-09 63.9 36 69.4
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.0e-08 63.5 51 52.9
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 1.0e-08 63.5 95 36.8
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.3e-08 63.2 71 42.3
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 1.3e-08 63.2 70 40.0
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 1.3e-08 63.2 69 44.9
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 1.3e-08 63.2 59 40.7
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 1.7e-08 62.8 62 45.2
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 1.7e-08 62.8 47 59.6
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 2.2e-08 62.4 76 38.2
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 2.2e-08 62.4 94 40.4
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 2.2e-08 62.4 61 44.3
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.2e-08 62.4 66 43.9
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 2.2e-08 62.4 79 39.2
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 2.2e-08 62.4 48 52.1
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 2.9e-08 62.0 74 44.6
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 2.9e-08 62.0 83 38.6
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 3.8e-08 61.6 83 39.8
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 3.8e-08 61.6 66 43.9
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 3.8e-08 61.6 66 43.9
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 3.8e-08 61.6 72 36.1
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 3.8e-08 61.6 83 41.0
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 5.0e-08 61.2 70 37.1
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 5.0e-08 61.2 69 43.5
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 5.0e-08 61.2 66 40.9
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 6.5e-08 60.8 36 66.7
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 6.5e-08 60.8 59 44.1
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 6.5e-08 60.8 64 39.1
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 6.5e-08 60.8 64 39.1
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 6.5e-08 60.8 62 45.2
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 6.5e-08 60.8 35 71.4
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 8.5e-08 60.5 36 66.7
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 8.5e-08 60.5 55 49.1
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 8.5e-08 60.5 66 42.4
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 8.5e-08 60.5 71 42.3
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 8.5e-08 60.5 57 49.1
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 8.5e-08 60.5 42 57.1
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 1.1e-07 60.1 96 34.4
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 1.1e-07 60.1 70 40.0
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.1e-07 60.1 69 43.5
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 1.4e-07 59.7 55 47.3
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.4e-07 59.7 55 47.3
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.4e-07 59.7 69 42.0
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 1.4e-07 59.7 55 50.9
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 1.4e-07 59.7 55 50.9
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 1.4e-07 59.7 96 32.3
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.9e-07 59.3 36 66.7
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 1.9e-07 59.3 35 71.4
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 2.5e-07 58.9 86 34.9
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 2.5e-07 58.9 86 40.7
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 2.5e-07 58.9 42 57.1
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 2.5e-07 58.9 36 61.1
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 3.2e-07 58.5 69 42.0
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 3.2e-07 58.5 77 36.4
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 4.2e-07 58.2 36 63.9
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.2e-07 58.2 74 41.9
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 4.2e-07 58.2 36 61.1
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 4.2e-07 58.2 36 61.1
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 4.2e-07 58.2 94 33.0
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 5.5e-07 57.8 69 42.0
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 7.2e-07 57.4 83 34.9
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 7.2e-07 57.4 35 62.9
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 7.2e-07 57.4 64 40.6
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 7.2e-07 57.4 35 57.1
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 9.3e-07 57.0 36 61.1
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 9.3e-07 57.0 42 54.8
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 1.2e-06 56.6 36 58.3
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 1.2e-06 56.6 59 42.4
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.2e-06 56.6 86 33.7
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 1.2e-06 56.6 35 57.1
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 1.2e-06 56.6 38 57.9
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 1.6e-06 56.2 60 40.0
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 2.1e-06 55.8 49 44.9
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 2.1e-06 55.8 35 62.9
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 2.1e-06 55.8 43 55.8
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 2.7e-06 55.5 78 37.2
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 4.6e-06 54.7 36 50.0
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 6.1e-06 54.3 35 60.0
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 7.9e-06 53.9 36 55.6


User provided reference genes

Program Settings