Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.8e-53 212.2 100 100.0
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 1.0e-16 90.1 61 65.6
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.3e-16 89.7 65 61.5
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 8.7e-16 87.0 61 65.6
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 8.7e-16 87.0 61 65.6
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 8.7e-16 87.0 61 65.6
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 8.7e-16 87.0 61 65.6
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 1.1e-15 86.7 61 65.6
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 1.5e-15 86.3 61 63.9
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 4.3e-15 84.7 63 65.1
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 9.6e-15 83.6 61 63.9
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 1.3e-14 83.2 61 62.3
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 1.3e-14 83.2 61 59.0
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 1.3e-14 83.2 61 63.9
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 1.3e-14 83.2 61 62.3
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 1.6e-14 82.8 61 62.3
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 2.1e-14 82.4 62 61.3
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 2.1e-14 82.4 61 63.9
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 2.1e-14 82.4 61 62.3
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 2.1e-14 82.4 61 62.3
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 2.1e-14 82.4 61 62.3
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 2.8e-14 82.0 61 60.7
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 2.8e-14 82.0 61 60.7
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 2.8e-14 82.0 61 59.0
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 2.8e-14 82.0 63 61.9
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 2.8e-14 82.0 61 59.0
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 3.7e-14 81.6 65 56.9
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 3.7e-14 81.6 61 60.7
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 3.7e-14 81.6 61 60.7
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 3.7e-14 81.6 61 60.7
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 4.8e-14 81.3 70 55.7
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 6.2e-14 80.9 61 62.3
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 6.2e-14 80.9 61 60.7
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 6.2e-14 80.9 61 60.7
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 8.1e-14 80.5 63 60.3
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.1e-13 80.1 61 60.7
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.1e-13 80.1 61 60.7
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.4e-13 79.7 61 57.4
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 1.8e-13 79.3 63 60.3
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 2.4e-13 79.0 63 58.7
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.4e-13 79.0 65 53.8
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 2.4e-13 79.0 65 56.9
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 2.4e-13 79.0 61 59.0
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 4.0e-13 78.2 68 51.5
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 4.0e-13 78.2 61 55.7
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 4.0e-13 78.2 61 55.7
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 5.3e-13 77.8 58 58.6
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 5.3e-13 77.8 61 60.7
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 5.3e-13 77.8 61 60.7
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 9.0e-13 77.0 61 59.0
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 9.0e-13 77.0 64 56.2
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.2e-12 76.6 63 52.4
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 1.2e-12 76.6 64 51.6
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 1.2e-12 76.6 61 57.4
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.5e-12 76.3 61 57.4
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 1.5e-12 76.3 61 60.7
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 1.5e-12 76.3 61 57.4
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 1.5e-12 76.3 61 59.0
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 2.0e-12 75.9 61 55.7
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 2.6e-12 75.5 61 59.0
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.6e-12 75.5 61 59.0
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.6e-12 75.5 61 55.7
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 3.4e-12 75.1 61 59.0
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 4.5e-12 74.7 61 57.4
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 4.5e-12 74.7 61 55.7
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 4.5e-12 74.7 65 49.2
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 5.8e-12 74.3 61 55.7
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 5.8e-12 74.3 61 57.4
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 5.8e-12 74.3 61 57.4
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 5.8e-12 74.3 61 54.1
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 7.6e-12 73.9 61 59.0
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 7.6e-12 73.9 61 55.7
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.0e-11 73.6 61 54.1
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 1.0e-11 73.6 61 59.0
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 1.3e-11 73.2 61 55.7
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.3e-11 73.2 65 50.8
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.3e-11 73.2 64 51.6
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.7e-11 72.8 61 59.0
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.7e-11 72.8 61 54.1
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 1.7e-11 72.8 61 57.4
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 8.4e-11 70.5 61 55.7
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.4e-10 69.7 61 52.5
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.9e-10 69.3 61 52.5
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 2.5e-10 68.9 63 52.4
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 4.2e-10 68.2 63 47.6
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 9.3e-10 67.0 63 46.0
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 1.6e-09 66.2 60 51.7
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 3.5e-09 65.1 61 49.2
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 7.9e-09 63.9 65 47.7
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 1.0e-08 63.5 62 53.2
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 1.8e-08 62.8 61 49.2
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 3.9e-08 61.6 62 51.6
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 6.7e-08 60.8 64 43.8
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 4.8e-06 54.7 64 43.8


User provided reference genes

Program Settings