Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02924 Sequoiadendron giganteum HOM05D003675 ORTHO05D004318 3.4e-127 458.4 235 100.0
TAR626G1758 Trochodendron aralioides HOM05D003675 ORTHO05D004318 1.9e-77 293.1 235 66.4
ATR1098G088 Amborella trichopoda HOM05D003675 ORTHO05D004318 1.2e-76 290.4 235 65.5
QL05p053600 Quercus lobata HOM05D003675 ORTHO05D004318 1.3e-75 287.0 234 64.5
Thecc.02G011900 Theobroma cacao HOM05D003675 ORTHO05D004318 5.1e-75 285.0 236 65.7
Cfa000847 Carpinus fangiana HOM05D003675 ORTHO05D004318 1.9e-74 283.1 239 64.0
CsaV3_1G037400 Cucumis sativus L. HOM05D003675 ORTHO05D004318 1.3e-73 280.4 235 63.4
CiPaw.09G116500 Carya illinoinensis HOM05D003675 ORTHO05D004318 1.6e-73 280.0 238 63.4
BcaNung05260 Brassica carinata HOM05D003675 ORTHO05D004318 2.8e-73 279.3 234 63.7
ClCG03G006310 Citrullus lanatus HOM05D003675 ORTHO05D004318 2.8e-73 279.3 235 63.4
Duzib132G0867 Durio zibethinus HOM05D003675 ORTHO05D004318 8.2e-73 277.7 234 62.4
AL1G44390 Arabidopsis lyrata HOM05D003675 ORTHO05D004318 1.1e-72 277.3 241 61.8
A08p24460 Brassica napus HOM05D003675 ORTHO05D004318 1.1e-72 277.3 235 63.4
COL.COLO4_17678 Corchorus olitorius HOM05D003675 ORTHO05D004318 1.1e-72 277.3 234 64.1
Duzib052G0595 Durio zibethinus HOM05D003675 ORTHO05D004318 1.4e-72 276.9 234 62.8
Aqoxy3G00253 Aquilegia oxysepala HOM05D003675 ORTHO05D004318 6.9e-72 274.6 239 61.9
AT1G30450 Arabidopsis thaliana HOM05D003675 ORTHO05D004318 6.9e-72 274.6 241 61.8
CiPaw.10G086400 Carya illinoinensis HOM05D003675 ORTHO05D004318 9.0e-72 274.2 237 63.3
A07p09940 Brassica napus HOM05D003675 ORTHO05D004318 1.2e-71 273.9 234 63.7
BraA07t28783Z Brassica rapa HOM05D003675 ORTHO05D004318 1.2e-71 273.9 234 63.2
Gohir.D12G044700 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.2e-71 273.9 239 61.5
Gorai.008G047100 Gossypium raimondii HOM05D003675 ORTHO05D004318 1.2e-71 273.9 239 61.5
Gohir.A12G045566 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.5e-71 273.5 239 61.5
GSVIVG01021607001 Vitis vinifera HOM05D003675 ORTHO05D004318 1.5e-71 273.5 236 62.7
BcaB03g13830 Brassica carinata HOM05D003675 ORTHO05D004318 3.4e-71 272.3 234 62.8
CARHR029820 Cardamine hirsuta HOM05D003675 ORTHO05D004318 3.4e-71 272.3 240 62.1
BraA08t34402Z Brassica rapa HOM05D003675 ORTHO05D004318 4.5e-71 271.9 235 63.0
C07p15140 Brassica napus HOM05D003675 ORTHO05D004318 5.9e-71 271.6 234 62.0
Aa31LG6G11710 Aethionema arabicum HOM05D003675 ORTHO05D004318 7.6e-71 271.2 240 61.2
BolC3t19930H Brassica oleracea HOM05D003675 ORTHO05D004318 1.0e-70 270.8 235 63.0
Eucgr.D00196 Eucalyptus grandis HOM05D003675 ORTHO05D004318 1.0e-70 270.8 242 61.2
Thhalv10006695m.g Eutrema salsugineum HOM05D003675 ORTHO05D004318 1.0e-70 270.8 237 62.4
Carub.0001s2862 Capsella rubella HOM05D003675 ORTHO05D004318 1.3e-70 270.4 240 61.2
BcaC01g00192 Brassica carinata HOM05D003675 ORTHO05D004318 1.7e-70 270.0 235 62.6
C03p76760 Brassica napus HOM05D003675 ORTHO05D004318 1.7e-70 270.0 235 62.6
BolC7t42018H Brassica oleracea HOM05D003675 ORTHO05D004318 1.7e-70 270.0 243 60.1
Duzib248G0664 Durio zibethinus HOM05D003675 ORTHO05D004318 2.2e-70 269.6 234 62.8
Sp1g26270 Schrenkiella parvula HOM05D003675 ORTHO05D004318 2.2e-70 269.6 237 61.6
Ciclev10014154m.g Citrus clementina HOM05D003675 ORTHO05D004318 6.5e-70 268.1 238 62.2
Prupe.4G088900 Prunus persica HOM05D003675 ORTHO05D004318 6.5e-70 268.1 238 60.1
CSS0048327 Camellia sinensis var. sinensis HOM05D003675 ORTHO05D004318 1.1e-69 267.3 243 61.3
CDE07G0817 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 2.5e-69 266.2 235 61.7
Sed0017115 Sechium edule HOM05D003675 ORTHO05D004318 3.2e-69 265.8 234 60.3
Actinidia07469 Actinidia chinensis HOM05D003675 ORTHO05D004318 9.3e-69 264.2 241 60.6
PSO675G2215 Papaver somniferum HOM05D003675 ORTHO05D004318 9.3e-69 264.2 246 60.6
TWI73G0281 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 1.6e-68 263.5 235 60.4
PSO675G7364 Papaver somniferum HOM05D003675 ORTHO05D004318 3.5e-68 262.3 248 59.7
PGR083G0730 Punica granatum HOM05D003675 ORTHO05D004318 7.9e-68 261.2 241 60.2
arahy.Tifrunner.gnm1.ann1.71J8LW Arachis hypogaea HOM05D003675 ORTHO05D004318 2.3e-67 259.6 228 59.6
Potri.001G357600 Populus trichocarpa HOM05D003675 ORTHO05D004318 3.9e-67 258.8 239 58.6
Potri.011G090900 Populus trichocarpa HOM05D003675 ORTHO05D004318 5.1e-67 258.5 239 59.0
Rhsim13G0119800 Rhododendron simsii HOM05D003675 ORTHO05D004318 5.1e-67 258.5 246 59.8
TAR627G0374 Trochodendron aralioides HOM05D003675 ORTHO05D004318 6.7e-67 258.1 205 66.8
Dinv15908 Davidia involucrata HOM05D003675 ORTHO05D004318 1.1e-66 257.3 240 60.4
Manes.06G060500 Manihot esculenta HOM05D003675 ORTHO05D004318 3.3e-66 255.8 235 58.3
HPP92_017213 Vanilla planifolia HOM05D003675 ORTHO05D004318 3.3e-66 255.8 235 60.4
Os08g0323700 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 4.3e-66 255.4 237 58.6
RcHm_v2.0_Chr5g0015611 Rosa chinensis HOM05D003675 ORTHO05D004318 4.3e-66 255.4 237 58.2
Sabra11G0086100 Salix brachista HOM05D003675 ORTHO05D004318 4.3e-66 255.4 239 58.6
Oeu015186.1 Olea europaea HOM05D003675 ORTHO05D004318 5.7e-66 255.0 247 57.1
Atru.chr10.917 Acer truncatum HOM05D003675 ORTHO05D004318 9.7e-66 254.2 239 60.3
MD10G1254500 Malus domestica HOM05D003675 ORTHO05D004318 9.7e-66 254.2 238 57.1
VMungo1309G0958 Vigna mungo HOM05D003675 ORTHO05D004318 9.7e-66 254.2 234 58.1
Atru.chr10.925 Acer truncatum HOM05D003675 ORTHO05D004318 1.3e-65 253.8 241 60.2
CANSAT35G1002 Cannabis sativa HOM05D003675 ORTHO05D004318 1.6e-65 253.4 235 58.3
TWI53G0160 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 2.2e-65 253.1 244 57.8
Dinv32189 Davidia involucrata HOM05D003675 ORTHO05D004318 3.7e-65 252.3 246 60.6
FAN16G2870 Fragaria x ananassa HOM05D003675 ORTHO05D004318 4.8e-65 251.9 235 57.4
Lj6g0000180 Lotus japonicus HOM05D003675 ORTHO05D004318 4.8e-65 251.9 239 56.9
FAN21G3951 Fragaria x ananassa HOM05D003675 ORTHO05D004318 6.3e-65 251.5 235 57.9
Psat1g019680 Pisum sativum HOM05D003675 ORTHO05D004318 8.2e-65 251.1 228 57.5
Zm00001eb286030 Zea mays HOM05D003675 ORTHO05D004318 8.2e-65 251.1 247 57.5
MD05G1275000 Malus domestica HOM05D003675 ORTHO05D004318 1.1e-64 250.8 241 56.0
Medtr2g048510 Medicago truncatula HOM05D003675 ORTHO05D004318 1.1e-64 250.8 241 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2138 Anthoceros agrestis HOM05D003675 ORTHO05D004318 1.4e-64 250.4 166 73.5
Glyma.15G193400 Glycine max HOM05D003675 ORTHO05D004318 1.4e-64 250.4 236 57.2
Manes.14G134400 Manihot esculenta HOM05D003675 ORTHO05D004318 1.4e-64 250.4 235 56.2
Migut.H01338 Erythranthe guttata HOM05D003675 ORTHO05D004318 2.4e-64 249.6 239 56.1
Zm00001eb347460 Zea mays HOM05D003675 ORTHO05D004318 2.4e-64 249.6 247 57.1
CAN.G1058.33 Capsicum annuum HOM05D003675 ORTHO05D004318 3.1e-64 249.2 235 60.4
Lj1C1164G14 Lonicera japonica HOM05D003675 ORTHO05D004318 4.1e-64 248.8 241 59.3
Phvul.009G216800 Phaseolus vulgaris HOM05D003675 ORTHO05D004318 4.1e-64 248.8 235 56.6
MBI18_g11285_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 1.5e-63 246.9 219 61.2
DCAR_003868 Daucus carota HOM05D003675 ORTHO05D004318 2.0e-63 246.5 236 59.3
Haze_05761 Corylus avellana HOM05D003675 ORTHO05D004318 2.6e-63 246.1 322 46.9
Glyma.09G085300 Glycine max HOM05D003675 ORTHO05D004318 3.4e-63 245.7 237 56.5
FvH4_3g09910 Fragaria vesca HOM05D003675 ORTHO05D004318 5.9e-63 245.0 237 56.5
FAN11G0336 Fragaria x ananassa HOM05D003675 ORTHO05D004318 5.9e-63 245.0 237 56.5
Gohir.D02G238100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 5.9e-63 245.0 240 57.9
Gorai.005G266600 Gossypium raimondii HOM05D003675 ORTHO05D004318 5.9e-63 245.0 240 57.9
Lalb_Chr08g0233231 Lupinus albus HOM05D003675 ORTHO05D004318 7.7e-63 244.6 237 57.0
Gohir.A03G216500 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.0e-62 244.2 240 57.9
Solyc02g070290.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 1.0e-62 244.2 238 58.0
SGA_v2.0_scaffold51G18648 Striga asiatica HOM05D003675 ORTHO05D004318 1.3e-62 243.8 256 57.4
Aa31LG10G6660 Aethionema arabicum HOM05D003675 ORTHO05D004318 1.7e-62 243.4 240 59.2
AUR62015052 Chenopodium quinoa HOM05D003675 ORTHO05D004318 2.9e-62 242.7 162 75.3
PGSC0003DMG400021101 Solanum tuberosum HOM05D003675 ORTHO05D004318 3.8e-62 242.3 237 57.4
Sopen02g019380 Solanum pennellii HOM05D003675 ORTHO05D004318 5.0e-62 241.9 238 57.6
Nn8g39842 Nelumbo nucifera HOM05D003675 ORTHO05D004318 1.1e-61 240.7 165 75.8
Lalb_Chr11g0073421 Lupinus albus HOM05D003675 ORTHO05D004318 1.4e-61 240.4 236 56.4
SGA_v2.0_scaffold106G30664 Striga asiatica HOM05D003675 ORTHO05D004318 1.4e-61 240.4 240 58.8
Cc09_g08810 Coffea canephora HOM05D003675 ORTHO05D004318 1.9e-61 240.0 249 56.6
Nitab4.5_0006732g0010 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.9e-61 240.0 236 57.6
DCAR_027870 Daucus carota HOM05D003675 ORTHO05D004318 2.5e-61 239.6 220 58.6
Nitab4.5_0000100g0150 Nicotiana tabacum HOM05D003675 ORTHO05D004318 2.5e-61 239.6 241 56.4
Solyc02g021620.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 3.2e-61 239.2 241 58.1
CDE04G3079 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 4.2e-61 238.8 150 79.3
Lj2A328G58 Lonicera japonica HOM05D003675 ORTHO05D004318 2.1e-60 236.5 252 55.6
Cpa.g.sc17.78 Carica papaya HOM05D003675 ORTHO05D004318 6.1e-60 235.0 239 57.7
Nn2g15671 Nelumbo nucifera HOM05D003675 ORTHO05D004318 6.1e-60 235.0 168 73.2
Mapoly0050s0083 Marchantia polymorpha HOM05D003675 ORTHO05D004318 7.9e-60 234.6 236 56.8
Zm00001eb197200 Zea mays HOM05D003675 ORTHO05D004318 1.0e-59 234.2 167 71.9
CAN.G660.39 Capsicum annuum HOM05D003675 ORTHO05D004318 1.8e-59 233.4 233 54.9
AUR62014439 Chenopodium quinoa HOM05D003675 ORTHO05D004318 6.7e-59 231.5 192 65.1
ECA233G3702 Erigeron canadensis HOM05D003675 ORTHO05D004318 3.3e-58 229.2 221 57.5
Peaxi162Scf00155g01015 Petunia axillaris HOM05D003675 ORTHO05D004318 4.3e-58 228.8 232 57.8
Nitab4.5_0007290g0030 Nicotiana tabacum HOM05D003675 ORTHO05D004318 9.7e-58 227.6 252 53.6
Sabra16G0235300 Salix brachista HOM05D003675 ORTHO05D004318 4.8e-57 225.3 294 46.3
HanXRQChr08g0209981 Helianthus annuus HOM05D003675 ORTHO05D004318 1.4e-56 223.8 242 53.7
Pp3c6_17940 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.4e-56 223.8 187 64.7
Lsat_1_v5_gn_8_147381 Lactuca sativa HOM05D003675 ORTHO05D004318 3.1e-56 222.6 244 53.7
EL10Ac8g20233 Beta vulgaris HOM05D003675 ORTHO05D004318 4.1e-56 222.2 216 58.8
arahy.Tifrunner.gnm1.ann1.F8HCHG Arachis hypogaea HOM05D003675 ORTHO05D004318 5.3e-56 221.9 322 42.5
HanXRQChr12g0385671 Helianthus annuus HOM05D003675 ORTHO05D004318 9.1e-56 221.1 211 59.7
SMO141G0147 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 1.1e-53 214.2 129 80.6
CBR_g27773 Chara braunii HOM05D003675 ORTHO05D004318 5.5e-53 211.8 167 67.7
Pp3c13_9730 Physcomitrium patens HOM05D003675 ORTHO05D004318 4.7e-52 208.8 221 53.4
Pp3c13_9737 Physcomitrium patens HOM05D003675 ORTHO05D004318 4.7e-52 208.8 221 53.4
Pp3c1_10530 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.1e-50 204.1 169 63.3
Hund06713 Selenicereus undatus HOM05D003675 ORTHO05D004318 9.7e-50 201.1 129 76.7
SalBow7G0158 Salvia bowleyana HOM05D003675 ORTHO05D004318 1.7e-49 200.3 358 40.8
Ca_02515_v3 Cicer arietinum L. HOM05D003675 ORTHO05D004318 6.3e-49 198.4 227 51.1
Ah.12g053620 Amaranthus hybridus HOM05D003675 ORTHO05D004318 1.6e-47 193.7 150 69.3
Pp3c2_27310 Physcomitrium patens HOM05D003675 ORTHO05D004318 5.9e-47 191.8 248 48.0
Sopen02g006170 Solanum pennellii HOM05D003675 ORTHO05D004318 6.5e-46 188.3 129 74.4
PSO339G2334 Papaver somniferum HOM05D003675 ORTHO05D004318 1.6e-44 183.7 129 70.5
vmacro03400 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 6.7e-43 178.3 273 44.3
Sed0018861 Sechium edule HOM05D003675 ORTHO05D004318 9.1e-40 167.9 94 87.2
MELO3C002803.2 Cucumis melo HOM05D003675 ORTHO05D004318 6.5e-38 161.8 308 39.6
Nitab4.5_0000869g0160 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.9e-37 160.2 94 84.0
SHI20673 Sapria himalayana HOM05D003675 ORTHO05D004318 2.5e-37 159.8 144 60.4
unitig_37.g12081 Utricularia gibba HOM05D003675 ORTHO05D004318 1.5e-34 150.6 235 45.1
PRCOL_00004754 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 4.4e-34 149.1 98 69.4
HPP92_010709 Vanilla planifolia HOM05D003675 ORTHO05D004318 1.8e-32 143.7 116 63.8
HPP92_010716 Vanilla planifolia HOM05D003675 ORTHO05D004318 1.8e-32 143.7 116 63.8
Os01g0304100 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 3.1e-24 116.3 72 80.6
Lsat_1_v5_gn_4_241 Lactuca sativa HOM05D003675 ORTHO05D004318 1.0e-19 101.3 239 33.9
Pp3c1_28340 Physcomitrium patens HOM05D003675 ORTHO05D004318 7.5e-18 95.1 107 44.9
PRCOL_00002134 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 9.8e-18 94.7 98 44.9
Mapoly0078s0036 Marchantia polymorpha HOM05D003675 ORTHO05D004318 1.7e-17 94.0 98 46.9
Pp3c17_10600 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.2e-17 93.6 107 44.9
Pp3c14_11040 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.1e-16 91.3 139 36.7
SMO304G0144 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 2.0e-15 87.0 98 42.9
MCO15G428 Micromonas commoda HOM05D003675 ORTHO05D004318 1.3e-14 84.3 98 40.8
AagrBONN_evm.TU.Sc2ySwM_362.1613 Anthoceros agrestis HOM05D003675 ORTHO05D004318 1.2e-12 77.8 82 48.8
vmacro23352 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 5.2e-11 72.4 268 29.5
AUR62034562 Chenopodium quinoa HOM05D003675 ORTHO05D004318 2.0e-10 70.5 162 37.0
SHI20674 Sapria himalayana HOM05D000105 ORTHO05D000023 3.4e-10 69.7 34 97.1


User provided reference genes

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