Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02923 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 1.5e-222 775.8 380 100.0
SEGI_05375 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 5.9e-214 747.3 380 96.3
SEGI_39139 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 9.2e-159 563.9 420 70.2
SEGI_24399 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 3.2e-143 512.3 317 83.9
SEGI_39524 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 3.2e-143 512.3 317 83.9
SEGI_18393 Sequoiadendron giganteum HOM05D017318 ORTHO05D012113 3.0e-141 505.8 387 70.8
SEGI_12151 Sequoiadendron giganteum HOM05D017318 ORTHO05D386110 7.2e-95 351.7 253 70.4
SEGI_15050 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 5.3e-29 132.9 358 28.2
SEGI_10025 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 1.4e-26 124.8 370 26.5
SEGI_06477 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 1.3e-24 118.2 366 27.9
SEGI_17066 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 1.7e-24 117.9 319 29.5
SEGI_28559 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 1.5e-23 114.8 318 28.6
SEGI_37285 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 2.5e-23 114.0 313 27.8
SEGI_01072 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 2.1e-22 110.9 379 24.3
SEGI_37037 Sequoiadendron giganteum HOM05D041823 ORTHO05D012113 1.8e-21 107.8 374 24.6
SEGI_38586 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 3.8e-19 100.1 310 26.8
SEGI_08435 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 4.9e-19 99.8 164 34.8
SEGI_41126 Sequoiadendron giganteum HOM05D002809 ORTHO05D012113 3.5e-17 93.6 373 24.7
SEGI_05332 Sequoiadendron giganteum HOM05D002809 ORTHO05D012113 8.7e-16 89.0 354 27.4
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 3.1e-13 80.5 349 24.4
SEGI_08933 Sequoiadendron giganteum HOM05D002809 ORTHO05D004563 4.0e-13 80.1 382 23.8
Pp3c9_20960 Physcomitrium patens HOM05D002809 ORTHO05D004939 9.0e-13 79.0 378 23.0
SEGI_19379 Sequoiadendron giganteum HOM05D041823 ORTHO05D386408 9.0e-13 79.0 389 24.9
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 2.0e-12 77.8 382 23.8
Pp3c15_17390 Physcomitrium patens HOM05D002809 ORTHO05D004939 3.4e-12 77.0 383 23.5
SEGI_24648 Sequoiadendron giganteum HOM05D041823 ORTHO05D386841 3.4e-12 77.0 318 25.8
Lj4g0005095 Lotus japonicus HOM05D002809 ORTHO05D004563 4.5e-12 76.6 351 22.2
Pp3c26_380 Physcomitrium patens HOM05D002809 ORTHO05D007546 1.7e-11 74.7 370 23.8
Pp3c9_6080 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.7e-11 74.7 376 24.2
Mapoly0005s0140 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.2e-11 74.3 385 23.1
Mapoly0063s0081 Marchantia polymorpha HOM05D002809 ORTHO05D004563 6.5e-11 72.8 316 25.9
Nn5g28167 Nelumbo nucifera HOM05D002809 ORTHO05D004939 8.4e-11 72.4 349 23.2
SMO364G0869 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 9.3e-10 68.9 138 31.9
SEGI_27472 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 9.3e-10 68.9 367 23.4
unitig_8.g3134 Utricularia gibba HOM05D002809 ORTHO05D004563 9.3e-10 68.9 354 19.8
ATR0561G142 Amborella trichopoda HOM05D002809 ORTHO05D004563 1.2e-09 68.6 356 21.9
HanXRQChr05g0128691 Helianthus annuus HOM05D002809 ORTHO05D004563 1.6e-09 68.2 363 22.9
Mapoly0186s0014 Marchantia polymorpha HOM05D004302 ORTHO05D004939 2.7e-09 67.4 182 28.0
PSO017G6955 Papaver somniferum HOM05D002809 ORTHO05D004563 2.7e-09 67.4 346 20.2
SEGI_39892 Sequoiadendron giganteum HOM05D003005 ORTHO05D017280 2.7e-09 67.4 371 22.4
unitig_22.g6404 Utricularia gibba HOM05D002809 ORTHO05D004563 3.5e-09 67.0 373 20.1
A03p07310 Brassica napus HOM05D004302 ORTHO05D004939 6.0e-09 66.2 375 22.1
BraA03t10054Z Brassica rapa HOM05D004302 ORTHO05D004939 6.0e-09 66.2 375 22.1
Lalb_Chr23g0278141 Lupinus albus HOM05D002809 ORTHO05D004563 6.0e-09 66.2 345 22.6
C03p08380 Brassica napus HOM05D004302 ORTHO05D004939 7.9e-09 65.9 375 22.1
BolC3t13345H Brassica oleracea HOM05D004302 ORTHO05D004939 7.9e-09 65.9 375 22.1
Pp3c11_18710 Physcomitrium patens HOM05D004302 ORTHO05D004939 7.9e-09 65.9 203 28.1
Sc11g0000420 Simmondsia chinensis HOM05D002809 ORTHO05D004563 7.9e-09 65.9 348 22.4
MSTRG.498 Avicennia marina HOM05D002809 ORTHO05D004563 1.3e-08 65.1 353 21.8
PSO478G1885 Papaver somniferum HOM05D002809 ORTHO05D004563 1.3e-08 65.1 346 20.2
Psat3g208160 Pisum sativum HOM05D004302 ORTHO05D004939 1.3e-08 65.1 340 21.5
Dinv10947 Davidia involucrata HOM05D002809 ORTHO05D004563 1.8e-08 64.7 351 19.9
Peaxi162Scf00518g00033 Petunia axillaris HOM05D002809 ORTHO05D004563 1.8e-08 64.7 375 21.1
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 1.8e-08 64.7 179 27.9
GSVIVG01010498001 Vitis vinifera HOM05D002809 ORTHO05D004563 1.8e-08 64.7 351 21.7
Medtr7g017400 Medicago truncatula HOM05D004302 ORTHO05D004939 2.3e-08 64.3 341 21.7
SEGI_41299 Sequoiadendron giganteum HOM05D025639 ORTHO05D384612 2.3e-08 64.3 172 25.6
TPR.G3302 Trifolium pratense HOM05D004302 ORTHO05D004939 2.3e-08 64.3 346 22.0
CDE06G1895 Ceratophyllum demersum HOM05D004302 ORTHO05D007546 3.9e-08 63.5 133 33.8
Oeu032833.1 Olea europaea HOM05D004302 ORTHO05D004939 3.9e-08 63.5 342 20.8
Sed0016657 Sechium edule HOM05D002809 ORTHO05D004563 3.9e-08 63.5 369 21.4
VMungo1383G2061 Vigna mungo HOM05D002809 ORTHO05D004563 3.9e-08 63.5 343 19.8
Mapoly0002s0187 Marchantia polymorpha HOM05D002809 ORTHO05D004563 5.1e-08 63.2 190 26.3
Mapoly0014s0188 Marchantia polymorpha HOM05D002809 ORTHO05D004563 5.1e-08 63.2 140 31.4
Pp3c22_14550 Physcomitrium patens HOM05D002809 ORTHO05D009385 5.1e-08 63.2 403 22.1
Pp3c25_9030 Physcomitrium patens HOM05D002809 ORTHO05D004939 5.1e-08 63.2 176 27.8
SMO351G0091 Selaginella moellendorffii HOM05D005977 ORTHO05D007546 5.1e-08 63.2 357 22.1
TAR381G0769 Trochodendron aralioides HOM05D003005 ORTHO05D004939 5.1e-08 63.2 353 22.7
Manes.13G010700 Manihot esculenta HOM05D002809 ORTHO05D004563 8.7e-08 62.4 357 21.0
Solyc05g015520.3 Solanum lycopersicum HOM05D002809 ORTHO05D004563 8.7e-08 62.4 350 19.4
Sopen12g034970 Solanum pennellii HOM05D002809 ORTHO05D004563 1.1e-07 62.0 350 19.4
VMungo1383G1338 Vigna mungo HOM05D004302 ORTHO05D004939 1.1e-07 62.0 345 22.0
Ca_16451_v3 Cicer arietinum L. HOM05D002809 ORTHO05D004563 1.5e-07 61.6 350 21.7
Dinv33879 Davidia involucrata HOM05D004302 ORTHO05D004939 1.5e-07 61.6 346 22.3
Mapoly0019s0019 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.5e-07 61.6 385 21.8
Phvul.001G262700 Phaseolus vulgaris HOM05D002809 ORTHO05D004563 1.5e-07 61.6 343 19.8
SMO116G0409 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 1.5e-07 61.6 351 20.5
Mapoly0190s0005 Marchantia polymorpha HOM05D004302 ORTHO05D004939 1.9e-07 61.2 164 26.8
HanXRQChr07g0200041 Helianthus annuus HOM05D004302 ORTHO05D004939 2.5e-07 60.8 377 21.8
Hma1.2p1_0448F.1_g154860 Hydrangea macrophylla HOM05D004302 ORTHO05D004939 2.5e-07 60.8 348 23.3
Mapoly0025s0090 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.5e-07 60.8 375 22.7
Atru.chr11.2338 Acer truncatum HOM05D002809 ORTHO05D004563 3.3e-07 60.5 346 21.4
SalBow2G0967 Salvia bowleyana HOM05D002809 ORTHO05D004563 3.3e-07 60.5 343 21.3
SEGI_04012 Sequoiadendron giganteum HOM05D003005 ORTHO05D009091 3.3e-07 60.5 148 28.4
THA.LOC104820986 Tarenaya hassleriana HOM05D004302 ORTHO05D004939 3.3e-07 60.5 342 22.2
BcaB01g05031 Brassica carinata HOM05D004302 ORTHO05D004939 4.3e-07 60.1 194 25.3
PSO478G2444 Papaver somniferum HOM05D004302 ORTHO05D004939 4.3e-07 60.1 346 22.0
Pp3c24_8170 Physcomitrium patens HOM05D002809 ORTHO05D004939 4.3e-07 60.1 426 18.5
Rhsim12G0092200 Rhododendron simsii HOM05D002809 ORTHO05D004563 4.3e-07 60.1 359 20.1
arahy.Tifrunner.gnm1.ann1.8GYA0C Arachis hypogaea HOM05D002809 ORTHO05D004563 5.7e-07 59.7 347 20.5
Glyma.08G104800 Glycine max HOM05D002809 ORTHO05D004563 5.7e-07 59.7 356 19.9
Pp3c9_20230 Physcomitrium patens HOM05D004302 ORTHO05D009385 5.7e-07 59.7 162 29.6
Nitab4.5_0001339g0010 Nicotiana tabacum HOM05D004302 ORTHO05D004939 7.4e-07 59.3 347 22.5
Sed0014031 Sechium edule HOM05D002809 ORTHO05D004563 7.4e-07 59.3 374 22.5
SMO304G0062 Selaginella moellendorffii HOM05D003005 ORTHO05D004170 7.4e-07 59.3 164 27.4
Aqoxy5G02276 Aquilegia oxysepala HOM05D002809 ORTHO05D004939 9.6e-07 58.9 145 26.9
Cc11_g17010 Coffea canephora HOM05D002809 ORTHO05D004563 9.6e-07 58.9 346 21.1
Oeu049142.1 Olea europaea HOM05D002809 ORTHO05D004563 9.6e-07 58.9 335 21.5
PGSC0003DMG400034305 Solanum tuberosum HOM05D002809 ORTHO05D004563 9.6e-07 58.9 350 19.1
Aqoxy3G00570 Aquilegia oxysepala HOM05D004302 ORTHO05D004939 1.3e-06 58.5 349 22.1
CSS0037679 Camellia sinensis var. sinensis HOM05D004302 ORTHO05D004939 1.3e-06 58.5 346 23.1
ECA246G0607 Erigeron canadensis HOM05D002809 ORTHO05D004563 1.3e-06 58.5 341 20.8
FvH4_6g46160 Fragaria vesca HOM05D004302 ORTHO05D004939 1.3e-06 58.5 351 21.1
FAN14G3160 Fragaria x ananassa HOM05D004302 ORTHO05D004939 1.3e-06 58.5 351 21.1
Gohir.D11G166700 Gossypium hirsutum HOM05D004302 ORTHO05D004939 1.3e-06 58.5 345 21.7
Gorai.007G177800 Gossypium raimondii HOM05D004302 ORTHO05D004939 1.3e-06 58.5 345 21.7
Mapoly0033s0124 Marchantia polymorpha HOM05D004302 ORTHO05D004939 1.3e-06 58.5 139 28.8
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 1.3e-06 58.5 350 23.1
Medtr3g085160 Medicago truncatula HOM05D002809 ORTHO05D004563 1.3e-06 58.5 345 21.4
SMO239G0172 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 1.3e-06 58.5 142 28.2
Atru.chr8.608 Acer truncatum HOM05D004302 ORTHO05D004939 1.6e-06 58.2 342 21.6
Ca_06955_v3 Cicer arietinum L. HOM05D004302 ORTHO05D004939 1.6e-06 58.2 346 21.7
COL.COLO4_10644 Corchorus olitorius HOM05D004302 ORTHO05D004939 1.6e-06 58.2 345 22.3
ECA238G3553 Erigeron canadensis HOM05D004302 ORTHO05D004939 1.6e-06 58.2 346 23.1
Nitab4.5_0002978g0090 Nicotiana tabacum HOM05D004302 ORTHO05D004939 1.6e-06 58.2 347 22.2
Pp3c24_18510 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.6e-06 58.2 152 25.7
Rhsim02G0109800 Rhododendron simsii HOM05D002809 ORTHO05D004563 1.6e-06 58.2 166 26.5
Thecc.04G108800 Theobroma cacao HOM05D004302 ORTHO05D004939 1.6e-06 58.2 345 22.0
CAN.G70.10 Capsicum annuum HOM05D002809 ORTHO05D004563 2.1e-06 57.8 361 19.1
FAN05G3039 Fragaria x ananassa HOM05D004302 ORTHO05D004939 2.1e-06 57.8 346 21.4
MD01G1073800 Malus domestica HOM05D003005 ORTHO05D004170 2.1e-06 57.8 150 31.3
Pp3c2_350 Physcomitrium patens HOM05D002809 ORTHO05D030462 2.1e-06 57.8 136 27.9
AT5G15710 Arabidopsis thaliana HOM05D004302 ORTHO05D004939 2.8e-06 57.4 377 21.8
MSTRG.8011 Avicennia marina HOM05D002809 ORTHO05D004563 2.8e-06 57.4 359 19.5
Glyma.08G253600 Glycine max HOM05D004302 ORTHO05D004939 2.8e-06 57.4 345 22.0
Nn8g38521 Nelumbo nucifera HOM05D006415 ORTHO05D008549 2.8e-06 57.4 166 27.7
Duzib133G0367 Durio zibethinus HOM05D004302 ORTHO05D004939 3.7e-06 57.0 345 21.7
Glyma.18G275900 Glycine max HOM05D004302 ORTHO05D004939 3.7e-06 57.0 345 21.7
Gorai.009G039600 Gossypium raimondii HOM05D006415 ORTHO05D008549 3.7e-06 57.0 169 29.0
MD09G1076600 Malus domestica HOM05D004302 ORTHO05D004939 3.7e-06 57.0 347 21.6
Pp3c19_12650 Physcomitrium patens HOM05D004302 ORTHO05D004939 3.7e-06 57.0 184 26.6
Prupe.3G247500 Prunus persica HOM05D004302 ORTHO05D004939 3.7e-06 57.0 348 22.1
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 3.7e-06 57.0 160 24.4
ATR0584G262 Amborella trichopoda HOM05D002809 ORTHO05D017280 4.8e-06 56.6 157 30.6
AUR62010787 Chenopodium quinoa HOM05D003005 ORTHO05D004170 4.8e-06 56.6 266 23.3
Gohir.D08G061666 Gossypium hirsutum HOM05D004302 ORTHO05D004939 4.8e-06 56.6 345 21.7
MBI07_g18750_MAGBIO Magnolia biondii HOM05D002809 ORTHO05D004563 4.8e-06 56.6 142 28.2
unitig_899.g15112 Utricularia gibba HOM05D004302 ORTHO05D004939 4.8e-06 56.6 345 21.7
Dinv38881 Davidia involucrata HOM05D003005 ORTHO05D004170 6.2e-06 56.2 170 25.9
Duzib138G0864 Durio zibethinus HOM05D004302 ORTHO05D004939 6.2e-06 56.2 345 22.0
FAN02G3051 Fragaria x ananassa HOM05D004302 ORTHO05D004939 6.2e-06 56.2 346 20.8
Gohir.A08G052000 Gossypium hirsutum HOM05D004302 ORTHO05D004939 6.2e-06 56.2 345 21.4
Hma1.2p1_2186F.1_g316430 Hydrangea macrophylla HOM05D004302 ORTHO05D004939 6.2e-06 56.2 346 22.3
MD07G1142500 Malus domestica HOM05D003005 ORTHO05D004170 6.2e-06 56.2 150 29.3
SEGI_07480 Sequoiadendron giganteum HOM05D005977 ORTHO05D004563 6.2e-06 56.2 346 20.5
SEGI_29243 Sequoiadendron giganteum HOM05D017318 ORTHO05D385252 6.2e-06 56.2 93 40.9
SGA_v2.0_scaffold52G19058 Striga asiatica HOM05D004302 ORTHO05D004939 6.2e-06 56.2 345 22.3
FAN09G3470 Fragaria x ananassa HOM05D004302 ORTHO05D004939 8.2e-06 55.8 346 21.1
Gorai.004G063700 Gossypium raimondii HOM05D004302 ORTHO05D004939 8.2e-06 55.8 345 21.4
Pp3c14_9030 Physcomitrium patens HOM05D002809 ORTHO05D009385 8.2e-06 55.8 178 27.0
Pp3c1_41170 Physcomitrium patens HOM05D002809 ORTHO05D015161 8.2e-06 55.8 164 27.4
Prupe.2G181900 Prunus persica HOM05D003005 ORTHO05D004170 8.2e-06 55.8 150 29.3
Hund13664 Selenicereus undatus HOM05D004302 ORTHO05D004939 8.2e-06 55.8 346 21.7
unitig_736.g22264 Utricularia gibba HOM05D004302 ORTHO05D004939 8.2e-06 55.8 345 21.7


User provided reference genes

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