Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 2.6e-225 785.0 386 100.0
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 1.3e-120 437.2 395 53.4
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 5.6e-119 431.8 395 53.4
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 1.0e-117 427.6 389 54.2
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 3.0e-117 426.0 395 52.4
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 1.5e-116 423.7 395 53.7
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 2.0e-116 423.3 395 53.7
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 2.6e-116 422.9 396 53.5
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.6e-116 422.9 391 51.9
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 4.4e-116 422.2 395 51.6
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 5.7e-116 421.8 394 52.3
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 7.5e-116 421.4 395 52.4
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.3e-115 420.6 394 51.3
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 1.7e-115 420.2 395 52.2
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 2.9e-115 419.5 396 53.0
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 4.9e-115 418.7 387 53.5
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 1.4e-114 417.2 395 52.7
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.8e-114 416.8 395 51.4
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 2.4e-114 416.4 396 52.3
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 3.2e-114 416.0 395 50.6
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 3.2e-114 416.0 386 52.6
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 3.2e-114 416.0 397 53.7
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 3.2e-114 416.0 397 52.9
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 4.1e-114 415.6 397 53.7
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 5.4e-114 415.2 393 51.7
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 7.0e-114 414.8 395 50.9
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 9.2e-114 414.5 386 52.3
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 9.2e-114 414.5 395 50.6
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 1.2e-113 414.1 394 51.3
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 1.2e-113 414.1 391 51.9
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 2.0e-113 413.3 394 50.8
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 2.0e-113 413.3 394 52.0
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 3.5e-113 412.5 391 51.2
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 6.0e-113 411.8 395 50.4
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 6.0e-113 411.8 392 52.6
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 1.3e-112 410.6 394 50.5
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 3.0e-112 409.5 394 50.3
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 3.0e-112 409.5 395 50.6
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 3.9e-112 409.1 387 51.4
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 3.9e-112 409.1 394 50.5
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 5.0e-112 408.7 396 50.0
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 5.0e-112 408.7 392 52.0
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 8.6e-112 407.9 394 50.3
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 8.6e-112 407.9 407 52.1
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 8.6e-112 407.9 395 51.6
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 8.6e-112 407.9 394 50.0
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 1.9e-111 406.8 397 50.6
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 2.5e-111 406.4 396 50.0
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 9.5e-111 404.4 396 49.7
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 1.2e-110 404.1 393 49.1
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 1.2e-110 404.1 397 51.1
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 1.6e-110 403.7 395 50.9
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 2.1e-110 403.3 395 51.1
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 3.6e-110 402.5 395 51.9
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 1.1e-109 401.0 390 48.7
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 2.3e-109 399.8 395 49.6
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 2.3e-109 399.8 396 48.7
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 5.2e-109 398.7 395 49.6
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 8.9e-109 397.9 391 51.4
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 1.2e-108 397.5 393 48.9
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 1.2e-108 397.5 375 50.4
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 1.2e-108 397.5 375 50.4
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 1.5e-108 397.1 395 49.9
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 2.6e-108 396.4 392 49.0
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 3.4e-108 396.0 393 49.1
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 2.2e-107 393.3 392 48.7
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 2.9e-107 392.9 380 51.6
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 3.7e-107 392.5 390 49.0
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 8.3e-107 391.3 394 49.5
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 4.6e-105 385.6 397 47.6
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 4.6e-105 385.6 384 49.5
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 2.3e-104 383.3 394 50.5
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 8.6e-104 381.3 385 48.8
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 3.3e-103 379.4 380 48.2
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 7.3e-103 378.3 391 48.6
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 9.5e-103 377.9 396 47.2
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 1.1e-101 374.4 395 46.8
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 1.1e-101 374.4 389 47.3
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 3.1e-101 372.9 394 47.7
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 5.2e-101 372.1 391 50.1
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 2.0e-100 370.2 396 47.2
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 7.5e-100 368.2 395 47.3
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 7.5e-100 368.2 395 47.3
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 3.7e-99 365.9 396 45.7
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 3.7e-99 365.9 396 46.5
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 8.3e-99 364.8 397 47.4
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 3.2e-98 362.8 394 46.4
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 4.3e-95 352.4 355 48.5
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 1.6e-94 350.5 349 48.7
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 6.2e-94 348.6 389 46.5
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 2.6e-92 343.2 389 44.7
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 2.2e-91 340.1 390 45.6
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 3.8e-91 339.3 375 44.3
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 7.1e-90 335.1 281 55.9
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 4.7e-86 322.4 323 50.8
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 4.7e-86 322.4 393 42.5
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 3.0e-80 303.1 348 43.7
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 2.4e-77 293.5 363 42.7
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 1.3e-75 287.7 239 55.6
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 1.2e-68 264.6 380 38.4
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 7.1e-66 255.4 253 50.2
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 7.9e-65 251.9 259 49.4
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 2.5e-63 246.9 198 56.1
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 1.6e-54 217.6 199 51.3
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.8e-54 216.9 251 45.0
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 1.0e-51 208.4 168 55.4
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 2.7e-49 200.3 427 30.9
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 6.3e-46 189.1 165 53.9
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 1.2e-44 184.9 413 31.5
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.6e-44 183.7 187 49.7
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 1.0e-40 171.8 239 39.3
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 1.3e-38 164.9 205 42.4
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 6.3e-38 162.5 109 68.8
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 7.0e-37 159.1 140 50.0
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 1.0e-35 155.2 186 45.2
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 1.1e-34 151.8 361 32.1
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 6.7e-32 142.5 93 67.7
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 3.3e-31 140.2 476 25.8
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 3.3e-31 140.2 146 50.0
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 3.3e-31 140.2 140 49.3
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 7.0e-29 132.5 175 37.7
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 2.0e-28 131.0 243 33.7
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 7.7e-28 129.0 145 48.3
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 1.2e-25 121.7 137 47.4
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 2.3e-24 117.5 93 61.3
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.2e-20 105.1 96 52.1
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 1.7e-19 101.3 57 78.9
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 8.0e-17 92.4 257 29.6
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 1.6e-12 78.2 91 36.3
SEGI_41477 Sequoiadendron giganteum HOM05D005798 ORTHO05D383991 5.0e-11 73.2 47 72.3
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 3.3e-10 70.5 77 42.9
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 8.0e-09 65.9 54 53.7
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 1.3e-06 58.5 80 45.0
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 2.8e-06 57.4 70 45.7


User provided reference genes

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