Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02702 Sequoiadendron giganteum HOM05D004338 ORTHO05D005205 3.8e-79 298.1 152 100.0
Nn1g02554 Nelumbo nucifera HOM05D004338 ORTHO05D005205 5.9e-16 88.2 54 75.9
PSO210G3643 Papaver somniferum HOM05D004338 ORTHO05D005205 2.9e-15 85.9 114 45.6
TAR636G0266 Trochodendron aralioides HOM05D004338 ORTHO05D005205 3.8e-15 85.5 64 67.2
PSO238G0023 Papaver somniferum HOM05D004338 ORTHO05D005205 5.0e-15 85.1 77 57.1
TAR365G0259 Trochodendron aralioides HOM05D004338 ORTHO05D005205 1.9e-14 83.2 53 71.7
Aqoxy102s001 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 2.5e-14 82.8 53 69.8
Aqoxy2G03524 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 2.5e-14 82.8 53 69.8
Dinv44613 Davidia involucrata HOM05D004338 ORTHO05D005205 2.5e-14 82.8 53 73.6
Sabra10G0064800 Salix brachista HOM05D004338 ORTHO05D005205 4.3e-14 82.0 106 47.2
CSS0014985 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 7.3e-14 81.3 53 71.7
Dinv14075 Davidia involucrata HOM05D004338 ORTHO05D005205 7.3e-14 81.3 53 71.7
Sc13g0004920 Simmondsia chinensis HOM05D004338 ORTHO05D005205 1.2e-13 80.5 76 55.3
Manes.03G170100 Manihot esculenta HOM05D004338 ORTHO05D005205 1.6e-13 80.1 53 67.9
Actinidia40096 Actinidia chinensis HOM05D004338 ORTHO05D005205 2.1e-13 79.7 73 54.8
SGA_v2.0_scaffold101G29777 Striga asiatica HOM05D004338 ORTHO05D005205 2.1e-13 79.7 56 64.3
Thecc.04G243900 Theobroma cacao HOM05D004338 ORTHO05D005205 2.1e-13 79.7 54 66.7
CiPaw.02G117900 Carya illinoinensis HOM05D004338 ORTHO05D005205 2.8e-13 79.3 54 66.7
Ciclev10004298m.g Citrus clementina HOM05D004338 ORTHO05D005205 2.8e-13 79.3 104 49.0
Prupe.1G027100 Prunus persica HOM05D004338 ORTHO05D005205 2.8e-13 79.3 57 64.9
Potri.010G078600 Populus trichocarpa HOM05D004338 ORTHO05D005205 3.6e-13 79.0 84 52.4
MBI04_g06839_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 4.7e-13 78.6 65 61.5
Oeu003600.1 Olea europaea HOM05D004338 ORTHO05D005205 4.7e-13 78.6 110 41.8
Psat6g113560 Pisum sativum HOM05D004338 ORTHO05D005205 4.7e-13 78.6 56 64.3
Potri.008G160700 Populus trichocarpa HOM05D004338 ORTHO05D005205 4.7e-13 78.6 110 45.5
MD13G1204000 Malus domestica HOM05D004338 ORTHO05D005205 6.1e-13 78.2 51 70.6
MD16G1206000 Malus domestica HOM05D004338 ORTHO05D005205 6.1e-13 78.2 51 70.6
DCAR_002355 Daucus carota HOM05D004338 ORTHO05D005205 8.0e-13 77.8 53 67.9
Glyma.10G179700 Glycine max HOM05D004338 ORTHO05D005205 8.0e-13 77.8 56 64.3
ATR0665G279 Amborella trichopoda HOM05D004338 ORTHO05D005205 1.0e-12 77.4 110 44.5
Glyma.20G210700 Glycine max HOM05D004338 ORTHO05D005205 1.0e-12 77.4 56 62.5
vmacro08400 Vaccinium macrocarpon HOM05D004338 ORTHO05D005205 1.0e-12 77.4 56 66.1
TPR.G14022 Trifolium pratense HOM05D004338 ORTHO05D005205 1.4e-12 77.0 56 62.5
MSTRG.21887 Avicennia marina HOM05D004338 ORTHO05D005205 1.8e-12 76.6 57 63.2
arahy.Tifrunner.gnm1.ann1.A4GDND Arachis hypogaea HOM05D004338 ORTHO05D005205 2.3e-12 76.3 56 60.7
Lsat_1_v5_gn_5_67480 Lactuca sativa HOM05D004338 ORTHO05D005205 2.3e-12 76.3 54 63.0
Phvul.003G138460 Phaseolus vulgaris HOM05D004338 ORTHO05D005205 2.3e-12 76.3 56 62.5
Medtr1g076330 Medicago truncatula HOM05D004338 ORTHO05D005205 3.0e-12 75.9 56 62.5
VMungo0720G2420 Vigna mungo HOM05D004338 ORTHO05D005205 3.0e-12 75.9 56 60.7
SalBow2G1414 Salvia bowleyana HOM05D004338 ORTHO05D005205 4.0e-12 75.5 53 62.3
Atru.chr4.2282 Acer truncatum HOM05D004338 ORTHO05D005205 5.2e-12 75.1 53 66.0
Actinidia08449 Actinidia chinensis HOM05D004338 ORTHO05D005205 5.2e-12 75.1 53 62.3
CSS0020604 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 5.2e-12 75.1 53 64.2
COL.COLO4_15767 Corchorus olitorius HOM05D004338 ORTHO05D005205 5.2e-12 75.1 54 63.0
ECA233G2689 Erigeron canadensis HOM05D004338 ORTHO05D005205 5.2e-12 75.1 51 68.6
Lj5g0007630 Lotus japonicus HOM05D004338 ORTHO05D005205 5.2e-12 75.1 56 60.7
Lalb_Chr02g0150011 Lupinus albus HOM05D004338 ORTHO05D005205 5.2e-12 75.1 56 62.5
TWI73G0220 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 5.2e-12 75.1 51 64.7
ClCG05G004690 Citrullus lanatus HOM05D004338 ORTHO05D005205 6.8e-12 74.7 54 61.1
Lj6C654G1 Lonicera japonica HOM05D004338 ORTHO05D005205 6.8e-12 74.7 74 52.7
Nitab4.5_0000525g0110 Nicotiana tabacum HOM05D004338 ORTHO05D005205 6.8e-12 74.7 53 67.9
Nitab4.5_0004203g0030 Nicotiana tabacum HOM05D004338 ORTHO05D005205 6.8e-12 74.7 53 67.9
arahy.Tifrunner.gnm1.ann1.1TW0Z8 Arachis hypogaea HOM05D004338 ORTHO05D005205 8.9e-12 74.3 67 53.7
Haze_11270 Corylus avellana HOM05D004338 ORTHO05D005205 8.9e-12 74.3 55 60.0
TWI09G1436 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 8.9e-12 74.3 51 66.7
Cfa008398 Carpinus fangiana HOM05D004338 ORTHO05D005205 1.2e-11 73.9 52 65.4
Sabra08G0122600 Salix brachista HOM05D004338 ORTHO05D005205 1.2e-11 73.9 106 44.3
Pp3c17_14700 Physcomitrium patens HOM05D004338 ORTHO05D005205 1.5e-11 73.6 105 40.0
QL06p015078 Quercus lobata HOM05D004338 ORTHO05D005205 1.5e-11 73.6 53 66.0
Sed0024916 Sechium edule HOM05D004338 ORTHO05D005205 1.5e-11 73.6 56 57.1
GSVIVG01018095001 Vitis vinifera HOM05D004338 ORTHO05D005205 1.5e-11 73.6 53 64.2
arahy.Tifrunner.gnm1.ann1.5I9I5Q Arachis hypogaea HOM05D004338 ORTHO05D005205 2.0e-11 73.2 56 58.9
arahy.Tifrunner.gnm1.ann1.EA06G0 Arachis hypogaea HOM05D004338 ORTHO05D005205 2.0e-11 73.2 53 60.4
Cc00_g20710 Coffea canephora HOM05D004338 ORTHO05D005205 2.0e-11 73.2 68 58.8
Gohir.D09G224200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 2.6e-11 72.8 54 61.1
Gorai.006G245700 Gossypium raimondii HOM05D004338 ORTHO05D005205 2.6e-11 72.8 54 61.1
Lalb_Chr03g0037911 Lupinus albus HOM05D004338 ORTHO05D005205 2.6e-11 72.8 53 64.2
Eucgr.H00218 Eucalyptus grandis HOM05D004338 ORTHO05D005205 3.4e-11 72.4 51 66.7
Zm00001eb004780 Zea mays HOM05D004338 ORTHO05D005205 3.4e-11 72.4 103 40.8
CDE03G0382 Ceratophyllum demersum HOM05D004338 ORTHO05D005205 5.7e-11 71.6 71 49.3
Gohir.A09G222100 Gossypium hirsutum HOM05D004338 ORTHO05D005205 5.7e-11 71.6 54 61.1
HPP92_009627 Vanilla planifolia HOM05D004338 ORTHO05D005205 5.7e-11 71.6 111 39.6
Ca_09879_v3 Cicer arietinum L. HOM05D004338 ORTHO05D005205 7.5e-11 71.2 56 62.5
Peaxi162Scf01416g00020 Petunia axillaris HOM05D004338 ORTHO05D005205 7.5e-11 71.2 53 64.2
CAN.G626.12 Capsicum annuum HOM05D004338 ORTHO05D005205 1.3e-10 70.5 53 66.0
Hund07295 Selenicereus undatus HOM05D004338 ORTHO05D005205 1.3e-10 70.5 70 52.9
CsaV3_3G012690 Cucumis sativus L. HOM05D004338 ORTHO05D005205 2.2e-10 69.7 104 40.4
FvH4_4g02230 Fragaria vesca HOM05D004338 ORTHO05D005205 2.2e-10 69.7 44 72.7
CANSAT78G1672 Cannabis sativa HOM05D004338 ORTHO05D005205 2.9e-10 69.3 103 43.7
HanXRQChr12g0381191 Helianthus annuus HOM05D004338 ORTHO05D005205 3.7e-10 68.9 54 55.6
Rhsim04G0194700 Rhododendron simsii HOM05D004338 ORTHO05D005205 3.7e-10 68.9 56 60.7
DCAR_024200 Daucus carota HOM05D004338 ORTHO05D005205 4.9e-10 68.6 109 37.6
FAN22G2191 Fragaria x ananassa HOM05D004338 ORTHO05D005205 4.9e-10 68.6 44 70.5
Gorai.006G070000 Gossypium raimondii HOM05D004338 ORTHO05D005205 4.9e-10 68.6 59 59.3
Sopen09g032180 Solanum pennellii HOM05D004338 ORTHO05D005205 4.9e-10 68.6 53 64.2
Gohir.A09G057200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 6.4e-10 68.2 108 41.7
Duzib151G0366 Durio zibethinus HOM05D004338 ORTHO05D005205 1.1e-09 67.4 50 62.0
Gohir.D09G056400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.1e-09 67.4 59 57.6
Migut.G00416 Erythranthe guttata HOM05D004338 ORTHO05D005205 1.4e-09 67.0 57 54.4
Cpa.g.sc58.22 Carica papaya HOM05D004338 ORTHO05D005205 1.8e-09 66.6 54 57.4
MELO3C006480.2 Cucumis melo HOM05D004338 ORTHO05D005205 1.8e-09 66.6 54 57.4
PGR142G2602 Punica granatum HOM05D004338 ORTHO05D005205 1.8e-09 66.6 51 60.8
RcHm_v2.0_Chr4g0389551 Rosa chinensis HOM05D004338 ORTHO05D005205 1.8e-09 66.6 101 42.6
AUR62006783 Chenopodium quinoa HOM05D004338 ORTHO05D005205 3.2e-09 65.9 53 56.6
RcHm_v2.0_Chr4g0389561 Rosa chinensis HOM05D004338 ORTHO05D005205 4.1e-09 65.5 108 41.7
Gohir.D10G152700 Gossypium hirsutum HOM05D004338 ORTHO05D005205 5.4e-09 65.1 54 59.3
AagrBONN_evm.TU.Sc2ySwM_117.2350 Anthoceros agrestis HOM05D004338 ORTHO05D005205 9.2e-09 64.3 109 37.6
Os03g0163100 Oryza sativa ssp. japonica HOM05D004338 ORTHO05D005205 1.2e-08 63.9 53 54.7
Hund21850 Selenicereus undatus HOM05D004338 ORTHO05D005205 1.2e-08 63.9 53 58.5
Gohir.A10G114400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.6e-08 63.5 50 60.0
AT5G02940 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 2.7e-08 62.8 111 35.1
Thhalv10003159m.g Eutrema salsugineum HOM05D004338 ORTHO05D005205 3.5e-08 62.4 53 50.9
CSS0000736 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 4.6e-08 62.0 39 71.8
CSS0016797 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 4.6e-08 62.0 39 71.8
CSS0047496 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 4.6e-08 62.0 39 71.8
Gorai.011G170600 Gossypium raimondii HOM05D004338 ORTHO05D005205 4.6e-08 62.0 54 57.4
AL6G12230 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 7.8e-08 61.2 111 35.1
Carub.0008s0490 Capsella rubella HOM05D004338 ORTHO05D005205 7.8e-08 61.2 53 54.7
Sp2g08530 Schrenkiella parvula HOM05D004338 ORTHO05D005205 7.8e-08 61.2 61 47.5
BcaB07g30561 Brassica carinata HOM05D004338 ORTHO05D005205 1.3e-07 60.5 53 50.9
BcaC03g16592 Brassica carinata HOM05D004338 ORTHO05D005205 1.3e-07 60.5 53 50.9
A02p27940 Brassica napus HOM05D004338 ORTHO05D005205 1.3e-07 60.5 53 50.9
C02p44140 Brassica napus HOM05D004338 ORTHO05D005205 1.3e-07 60.5 53 50.9
BolC2t10456H Brassica oleracea HOM05D004338 ORTHO05D005205 1.3e-07 60.5 53 50.9
BraA02t07831Z Brassica rapa HOM05D004338 ORTHO05D005205 1.3e-07 60.5 53 50.9
Aa31LG5G3510 Aethionema arabicum HOM05D004338 ORTHO05D005205 1.7e-07 60.1 53 50.9
AagrBONN_evm.TU.Sc2ySwM_117.2360 Anthoceros agrestis HOM05D004338 ORTHO05D005205 1.7e-07 60.1 111 36.0
AL8G16540 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.7e-07 60.1 61 45.9
AT5G43745 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 3.0e-07 59.3 61 45.9
AL8G16520 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 3.9e-07 58.9 53 50.9
RcHm_v2.0_Chr4g0389581 Rosa chinensis HOM05D004338 ORTHO05D005205 8.6e-07 57.8 37 70.3
AL37U10030 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.5e-06 57.0 53 50.9
EL10Ac4g09514 Beta vulgaris HOM05D004338 ORTHO05D005205 1.5e-06 57.0 53 52.8
Carub.0006s0174 Capsella rubella HOM05D004338 ORTHO05D005205 1.5e-06 57.0 103 35.0
BcaC07g41038 Brassica carinata HOM05D004338 ORTHO05D005205 5.6e-06 55.1 69 39.1
A09p57320 Brassica napus HOM05D004338 ORTHO05D005205 5.6e-06 55.1 69 39.1
C08p40410 Brassica napus HOM05D004338 ORTHO05D005205 5.6e-06 55.1 69 39.1
BolC8t51609H Brassica oleracea HOM05D004338 ORTHO05D005205 5.6e-06 55.1 69 39.1
BraA09t41125Z Brassica rapa HOM05D004338 ORTHO05D005205 5.6e-06 55.1 69 39.1
CARHR179760 Cardamine hirsuta HOM05D004338 ORTHO05D005205 7.3e-06 54.7 72 43.1
SMO174G0094 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 7.3e-06 54.7 47 53.2
BcaB08g35114 Brassica carinata HOM05D004338 ORTHO05D005205 9.5e-06 54.3 70 38.6


User provided reference genes

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