Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02687 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 4.7e-88 327.8 160 100.0
TWI79G1066 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 1.9e-28 129.8 96 65.6
MD11G1068800 Malus domestica HOM05D003314 ORTHO05D004164 3.2e-28 129.0 86 72.1
Atru.chr3.4168 Acer truncatum HOM05D003314 ORTHO05D004164 5.4e-28 128.3 96 66.7
Ciclev10027872m.g Citrus clementina HOM05D003314 ORTHO05D004164 5.4e-28 128.3 96 65.6
Ah.01g002410 Amaranthus hybridus HOM05D003314 ORTHO05D004164 7.1e-28 127.9 86 72.1
TAR636G3324 Trochodendron aralioides HOM05D003314 ORTHO05D004164 7.1e-28 127.9 96 65.6
CiPaw.14G057100 Carya illinoinensis HOM05D003314 ORTHO05D004164 9.3e-28 127.5 86 72.1
Dinv09644 Davidia involucrata HOM05D003314 ORTHO05D004164 9.3e-28 127.5 86 73.3
Dinv28665 Davidia involucrata HOM05D003314 ORTHO05D004164 9.3e-28 127.5 86 73.3
Peaxi162Scf00540g00022 Petunia axillaris HOM05D003314 ORTHO05D004164 1.2e-27 127.1 96 65.6
TWI31G0289 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 1.2e-27 127.1 96 64.6
Sabra09G0055800 Salix brachista HOM05D003314 ORTHO05D004164 1.6e-27 126.7 77 76.6
EL10Ac9g22391 Beta vulgaris HOM05D003314 ORTHO05D004164 2.1e-27 126.3 86 70.9
PSO017G4706 Papaver somniferum HOM05D003314 ORTHO05D004164 2.1e-27 126.3 96 64.6
PSO170G0130 Papaver somniferum HOM05D003314 ORTHO05D004164 2.1e-27 126.3 96 64.6
Potri.009G073800 Populus trichocarpa HOM05D003314 ORTHO05D004164 2.1e-27 126.3 86 70.9
CSS0023090 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 2.7e-27 125.9 86 72.1
Cpa.g.sc2.427 Carica papaya HOM05D003314 ORTHO05D004164 2.7e-27 125.9 86 70.9
Cfa011730 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.7e-27 125.9 86 72.1
COL.COLO4_11092 Corchorus olitorius HOM05D003314 ORTHO05D004164 2.7e-27 125.9 96 64.6
Duzib150G1198 Durio zibethinus HOM05D003314 ORTHO05D004164 2.7e-27 125.9 86 70.9
Lalb_Chr15g0083041 Lupinus albus HOM05D003314 ORTHO05D004164 2.7e-27 125.9 86 72.1
Medtr3g464770 Medicago truncatula HOM05D003314 ORTHO05D004164 3.5e-27 125.6 86 72.1
Prupe.6G053800 Prunus persica HOM05D003314 ORTHO05D004164 3.5e-27 125.6 86 69.8
Rhsim13G0067500 Rhododendron simsii HOM05D003314 ORTHO05D004164 3.5e-27 125.6 86 72.1
TPR.G32920 Trifolium pratense HOM05D003314 ORTHO05D004164 3.5e-27 125.6 86 72.1
Dinv07104 Davidia involucrata HOM05D003314 ORTHO05D004164 4.6e-27 125.2 86 72.1
CANSAT54G2389 Cannabis sativa HOM05D003314 ORTHO05D004164 6.0e-27 124.8 86 70.9
Haze_24369 Corylus avellana HOM05D003314 ORTHO05D004164 6.0e-27 124.8 86 70.9
Nitab4.5_0000839g0080 Nicotiana tabacum HOM05D003314 ORTHO05D004164 6.0e-27 124.8 86 70.9
Nitab4.5_0002352g0010 Nicotiana tabacum HOM05D003314 ORTHO05D004164 6.0e-27 124.8 86 70.9
Os05g0164100 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 6.0e-27 124.8 142 49.3
Potri.001G279100 Populus trichocarpa HOM05D003314 ORTHO05D004164 6.0e-27 124.8 86 69.8
AUR62025049 Chenopodium quinoa HOM05D003314 ORTHO05D004164 7.9e-27 124.4 78 75.6
Hma1.2p1_1981F.1_g309920 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 7.9e-27 124.4 86 70.9
Nn2g10926 Nelumbo nucifera HOM05D003314 ORTHO05D004164 7.9e-27 124.4 86 69.8
GSVIVG01024699001 Vitis vinifera HOM05D003314 ORTHO05D004164 7.9e-27 124.4 96 64.6
CSS0022626 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.0e-26 124.0 86 70.9
CSS0049027 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.0e-26 124.0 86 70.9
CiPaw.13G074400 Carya illinoinensis HOM05D003314 ORTHO05D004164 1.0e-26 124.0 86 69.8
AUR62041217 Chenopodium quinoa HOM05D003314 ORTHO05D004164 1.0e-26 124.0 78 75.6
FvH4_3g39080 Fragaria vesca HOM05D003314 ORTHO05D004164 1.0e-26 124.0 86 69.8
FAN21G3397 Fragaria x ananassa HOM05D003314 ORTHO05D004164 1.0e-26 124.0 86 69.8
FAN25G2774 Fragaria x ananassa HOM05D003314 ORTHO05D004164 1.0e-26 124.0 86 69.8
RcHm_v2.0_Chr5g0070401 Rosa chinensis HOM05D003314 ORTHO05D004164 1.0e-26 124.0 86 69.8
Solyc06g082150.4 Solanum lycopersicum HOM05D003314 ORTHO05D004164 1.0e-26 124.0 96 63.5
Sopen06g033530 Solanum pennellii HOM05D003314 ORTHO05D004164 1.0e-26 124.0 96 63.5
PGSC0003DMG400030370 Solanum tuberosum HOM05D003314 ORTHO05D004164 1.0e-26 124.0 96 63.5
MD03G1064800 Malus domestica HOM05D003314 ORTHO05D004164 1.3e-26 123.6 86 69.8
CAN.G1095.9 Capsicum annuum HOM05D003314 ORTHO05D004164 1.8e-26 123.2 86 69.8
Eucgr.J01899 Eucalyptus grandis HOM05D003314 ORTHO05D004164 1.8e-26 123.2 88 68.2
MBI15_g29380_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 1.8e-26 123.2 86 68.6
Manes.18G141800 Manihot esculenta HOM05D003314 ORTHO05D004164 1.8e-26 123.2 86 72.1
Zm00001eb013550 Zea mays HOM05D003314 ORTHO05D004164 1.8e-26 123.2 86 67.4
PGR119G0996 Punica granatum HOM05D003314 ORTHO05D004164 2.3e-26 122.9 86 69.8
arahy.Tifrunner.gnm1.ann1.99UL3I Arachis hypogaea HOM05D003314 ORTHO05D004164 3.0e-26 122.5 92 67.4
CsaV3_6G016080 Cucumis sativus L. HOM05D003314 ORTHO05D004164 3.0e-26 122.5 85 71.8
Lj1A130T38 Lonicera japonica HOM05D003314 ORTHO05D004164 3.0e-26 122.5 86 68.6
Sed0000995 Sechium edule HOM05D003314 ORTHO05D004164 3.0e-26 122.5 85 71.8
MSTRG.12679 Avicennia marina HOM05D003314 ORTHO05D004164 3.9e-26 122.1 86 69.8
Psat5g157680 Pisum sativum HOM05D003314 ORTHO05D004164 3.9e-26 122.1 86 70.9
SGA_v2.0_scaffold146G36142 Striga asiatica HOM05D003314 ORTHO05D004164 3.9e-26 122.1 86 69.8
Thecc.09G352300 Theobroma cacao HOM05D003314 ORTHO05D004164 3.9e-26 122.1 86 69.8
Glyma.18G060600 Glycine max HOM05D003314 ORTHO05D004164 5.1e-26 121.7 86 69.8
BcaB03g13407 Brassica carinata HOM05D003314 ORTHO05D004164 6.7e-26 121.3 86 68.6
Duzib168G0330 Durio zibethinus HOM05D003314 ORTHO05D004164 6.7e-26 121.3 86 67.4
Sc21g0000200 Simmondsia chinensis HOM05D003314 ORTHO05D004164 6.7e-26 121.3 86 69.8
TAR623G0703 Trochodendron aralioides HOM05D003314 ORTHO05D004164 6.7e-26 121.3 86 68.6
Aqoxy4G02458 Aquilegia oxysepala HOM05D003314 ORTHO05D004164 8.7e-26 120.9 86 68.6
ECA247G1043 Erigeron canadensis HOM05D003314 ORTHO05D004164 8.7e-26 120.9 86 68.6
MSTRG.17878 Avicennia marina HOM05D003314 ORTHO05D004164 1.1e-25 120.6 86 69.8
ClCG02G019450 Citrullus lanatus HOM05D003314 ORTHO05D004164 1.1e-25 120.6 85 70.6
Gohir.A03G028500 Gossypium hirsutum HOM05D003314 ORTHO05D004164 1.1e-25 120.6 86 67.4
Gorai.003G146900 Gossypium raimondii HOM05D003314 ORTHO05D004164 1.1e-25 120.6 86 67.4
HanXRQChr08g0229151 Helianthus annuus HOM05D003314 ORTHO05D004164 1.1e-25 120.6 86 68.6
Medtr8g066450 Medicago truncatula HOM05D003314 ORTHO05D004164 1.1e-25 120.6 87 67.8
Nitab4.5_0000752g0070 Nicotiana tabacum HOM05D003314 ORTHO05D004164 1.1e-25 120.6 96 63.5
THA.LOC104800751 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 1.1e-25 120.6 86 67.4
THA.LOC104815810 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 1.1e-25 120.6 96 62.5
CDE06G0062 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 1.5e-25 120.2 86 68.6
CDE12G0129 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 1.5e-25 120.2 86 68.6
Glyma.11G169700 Glycine max HOM05D003314 ORTHO05D004164 1.5e-25 120.2 86 68.6
Glyma.11G172200 Glycine max HOM05D003314 ORTHO05D004164 1.5e-25 120.2 86 68.6
Gohir.D03G140100 Gossypium hirsutum HOM05D003314 ORTHO05D004164 1.5e-25 120.2 76 73.7
Lsat_1_v5_gn_9_19140 Lactuca sativa HOM05D003314 ORTHO05D004164 1.5e-25 120.2 86 67.4
QL01p039122 Quercus lobata HOM05D003314 ORTHO05D004164 1.5e-25 120.2 86 67.4
SalBow2G2371 Salvia bowleyana HOM05D003314 ORTHO05D004164 1.5e-25 120.2 86 68.6
Zm00001eb282250 Zea mays HOM05D003314 ORTHO05D004164 1.5e-25 120.2 142 50.0
A08p35790 Brassica napus HOM05D003314 ORTHO05D004164 2.5e-25 119.4 86 67.4
C08p02820 Brassica napus HOM05D003314 ORTHO05D004164 2.5e-25 119.4 86 67.4
BolC8t47077H Brassica oleracea HOM05D003314 ORTHO05D004164 2.5e-25 119.4 86 67.4
BraA08t35486Z Brassica rapa HOM05D003314 ORTHO05D004164 2.5e-25 119.4 86 67.4
VMungo0540G1658 Vigna mungo HOM05D003314 ORTHO05D004164 2.5e-25 119.4 86 68.6
ATR0681G099 Amborella trichopoda HOM05D003314 ORTHO05D004164 3.3e-25 119.0 86 69.8
Os03g0294200 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 3.3e-25 119.0 86 65.1
BcaC07g42027 Brassica carinata HOM05D003314 ORTHO05D004164 4.3e-25 118.6 96 60.4
A09p66600 Brassica napus HOM05D003314 ORTHO05D004164 4.3e-25 118.6 96 60.4
C08p50810 Brassica napus HOM05D003314 ORTHO05D004164 4.3e-25 118.6 96 60.4
BolC8t52609H Brassica oleracea HOM05D003314 ORTHO05D004164 4.3e-25 118.6 96 60.4
BraA09t42000Z Brassica rapa HOM05D003314 ORTHO05D004164 4.3e-25 118.6 96 60.4
Migut.N00780 Erythranthe guttata HOM05D003314 ORTHO05D004164 4.3e-25 118.6 86 67.4
Thhalv10006901m.g Eutrema salsugineum HOM05D003314 ORTHO05D004164 4.3e-25 118.6 86 66.3
Oeu051518.1 Olea europaea HOM05D003314 ORTHO05D004164 4.3e-25 118.6 87 69.0
AL1G17230 Arabidopsis lyrata HOM05D003314 ORTHO05D004164 5.6e-25 118.2 86 66.3
AT1G07110 Arabidopsis thaliana HOM05D003314 ORTHO05D004164 5.6e-25 118.2 86 66.3
BcaC05g24676 Brassica carinata HOM05D003314 ORTHO05D004164 5.6e-25 118.2 86 67.4
A10p05630 Brassica napus HOM05D003314 ORTHO05D004164 5.6e-25 118.2 86 67.4
C05p05170 Brassica napus HOM05D003314 ORTHO05D004164 5.6e-25 118.2 86 67.4
BolC5t29289H Brassica oleracea HOM05D003314 ORTHO05D004164 5.6e-25 118.2 86 67.4
BraA10t42824Z Brassica rapa HOM05D003314 ORTHO05D004164 5.6e-25 118.2 86 67.4
arahy.Tifrunner.gnm1.ann1.H173G9 Arachis hypogaea HOM05D003314 ORTHO05D004164 7.4e-25 117.9 96 64.6
Phvul.006G069900 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 7.4e-25 117.9 86 67.4
Aa31LG1G6350 Aethionema arabicum HOM05D003314 ORTHO05D004164 9.6e-25 117.5 86 65.1
Carub.0001s0639 Capsella rubella HOM05D003314 ORTHO05D004164 9.6e-25 117.5 86 65.1
Cc01_g14510 Coffea canephora HOM05D003314 ORTHO05D004164 9.6e-25 117.5 86 67.4
Lsat_1_v5_gn_5_172641 Lactuca sativa HOM05D003314 ORTHO05D004164 9.6e-25 117.5 76 73.7
unitig_60.g25552 Utricularia gibba HOM05D003314 ORTHO05D004164 9.6e-25 117.5 96 61.5
CARHR006800 Cardamine hirsuta HOM05D003314 ORTHO05D004164 1.3e-24 117.1 86 65.1
Hund08127 Selenicereus undatus HOM05D003314 ORTHO05D004164 2.1e-24 116.3 76 71.1
HPP92_013781 Vanilla planifolia HOM05D003314 ORTHO05D004164 2.1e-24 116.3 86 66.3
HanXRQChr01g0011671 Helianthus annuus HOM05D003314 ORTHO05D004164 3.7e-24 115.5 86 66.3
MELO3C026830.2 Cucumis melo HOM05D003314 ORTHO05D004164 8.1e-24 114.4 95 64.2
Mapoly0056s0097 Marchantia polymorpha HOM05D003314 ORTHO05D004164 8.1e-24 114.4 86 64.0
SMO244G0010 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 1.1e-23 114.0 86 64.0
TPR.G5069 Trifolium pratense HOM05D003314 ORTHO05D004164 1.1e-23 114.0 107 57.0
DCAR_007359 Daucus carota HOM05D003314 ORTHO05D004164 1.4e-23 113.6 96 58.3
Phvul.008G259400 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 1.4e-23 113.6 86 65.1
Medtr5g071900 Medicago truncatula HOM05D003314 ORTHO05D004164 1.8e-23 113.2 86 65.1
Lalb_Chr17g0345221 Lupinus albus HOM05D003314 ORTHO05D004164 2.4e-23 112.8 86 65.1
Pp3c19_20300 Physcomitrium patens HOM05D003314 ORTHO05D004164 3.1e-23 112.5 86 61.6
SMO174G0065 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 3.1e-23 112.5 86 64.0
LjContig00141g0002673 Lotus japonicus HOM05D003314 ORTHO05D004164 6.9e-23 111.3 76 71.1
Ca_05629_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 1.2e-22 110.5 86 64.0
Glyma.02G228700 Glycine max HOM05D003314 ORTHO05D004164 1.2e-22 110.5 76 71.1
Glyma.14G195700 Glycine max HOM05D003314 ORTHO05D004164 1.2e-22 110.5 76 71.1
ECA248G0301 Erigeron canadensis HOM05D003314 ORTHO05D004164 2.6e-22 109.4 75 69.3
Pp3c21_10950 Physcomitrium patens HOM05D003314 ORTHO05D004164 2.6e-22 109.4 86 60.5
Lj6g0001244 Lotus japonicus HOM05D003314 ORTHO05D004164 4.5e-22 108.6 86 65.1
vmacro02947 Vaccinium macrocarpon HOM05D003314 ORTHO05D004164 5.8e-22 108.2 103 57.3
Pp3c16_2340 Physcomitrium patens HOM05D003314 ORTHO05D004164 9.9e-22 107.5 85 60.0
AagrBONN_evm.TU.Sc2ySwM_117.3149 Anthoceros agrestis HOM05D003314 ORTHO05D004164 1.3e-21 107.1 86 62.8
Pp3c25_1530 Physcomitrium patens HOM05D003314 ORTHO05D004164 1.3e-21 107.1 85 61.2
Psat2g055960 Pisum sativum HOM05D003314 ORTHO05D004164 2.9e-21 105.9 81 64.2
arahy.Tifrunner.gnm1.ann1.UVU1B7 Arachis hypogaea HOM05D003314 ORTHO05D004164 9.3e-20 100.9 76 69.7
arahy.Tifrunner.gnm1.ann1.Y0JIV8 Arachis hypogaea HOM05D003314 ORTHO05D004164 9.3e-20 100.9 76 69.7
SGA_v2.0_scaffold120G32908 Striga asiatica HOM05D003314 ORTHO05D004164 2.4e-15 86.3 62 67.7
Lj2A1086G63 Lonicera japonica HOM05D003314 ORTHO05D004164 3.4e-14 82.4 52 76.9
Sp1g05830 Schrenkiella parvula HOM05D003314 ORTHO05D004164 2.5e-12 76.3 52 65.4
Cre16.g652150 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 7.9e-11 71.2 87 39.1
Ca_14964_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 2.3e-10 69.7 86 51.2
Cre16.g691888 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 5.1e-10 68.6 97 37.1
Gohir.A10G178966 Gossypium hirsutum HOM05D003314 ORTHO05D004164 1.5e-09 67.0 55 56.4
MCO01G554 Micromonas commoda HOM05D003314 ORTHO05D004164 3.3e-09 65.9 99 36.4
PRCOL_00004422 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 2.4e-07 59.7 140 30.7
Cfa025454 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.0e-06 56.6 74 40.5


User provided reference genes

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