Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 8.6e-93 343.6 166 100.0
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 7.8e-70 267.3 156 79.5
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 1.3e-69 266.5 155 80.6
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 2.3e-69 265.8 155 80.6
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 3.9e-69 265.0 156 78.2
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 6.6e-69 264.2 156 78.8
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 8.6e-69 263.8 155 79.4
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 1.1e-68 263.5 153 82.4
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 1.1e-68 263.5 156 78.8
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 1.1e-68 263.5 155 78.1
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.5e-68 263.1 155 79.4
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.5e-68 263.1 155 79.4
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 1.9e-68 262.7 155 78.7
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 1.9e-68 262.7 155 78.7
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 2.5e-68 262.3 155 78.7
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 2.5e-68 262.3 155 78.7
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 4.3e-68 261.5 153 81.7
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 4.3e-68 261.5 156 79.5
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 9.5e-68 260.4 155 78.7
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 1.2e-67 260.0 157 77.7
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 2.1e-67 259.2 155 78.7
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 2.1e-67 259.2 156 77.6
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 2.8e-67 258.8 155 78.7
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 2.8e-67 258.8 156 77.6
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 3.6e-67 258.5 156 78.2
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 3.6e-67 258.5 156 76.9
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 4.7e-67 258.1 155 76.8
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 4.7e-67 258.1 164 74.4
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 4.7e-67 258.1 155 76.1
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 6.2e-67 257.7 155 77.4
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 6.2e-67 257.7 156 75.6
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 6.2e-67 257.7 155 77.4
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 8.1e-67 257.3 164 75.0
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 1.1e-66 256.9 153 78.4
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 1.1e-66 256.9 155 76.1
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.1e-66 256.9 155 77.4
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 1.4e-66 256.5 155 77.4
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 1.4e-66 256.5 153 77.1
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 1.4e-66 256.5 155 75.5
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 1.8e-66 256.1 162 75.3
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 2.3e-66 255.8 150 80.0
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 2.3e-66 255.8 155 78.1
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 3.1e-66 255.4 155 76.8
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 4.0e-66 255.0 155 75.5
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 4.0e-66 255.0 155 77.4
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 5.2e-66 254.6 155 76.8
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 5.2e-66 254.6 156 75.0
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 5.2e-66 254.6 156 74.4
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 8.9e-66 253.8 156 75.0
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 1.2e-65 253.4 152 78.3
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 1.5e-65 253.1 164 73.2
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 1.5e-65 253.1 155 76.8
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 2.0e-65 252.7 157 74.5
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 2.0e-65 252.7 156 75.0
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 2.6e-65 252.3 162 73.5
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 2.6e-65 252.3 157 75.2
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 3.4e-65 251.9 162 72.8
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 3.4e-65 251.9 154 76.6
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 4.4e-65 251.5 164 73.2
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 4.4e-65 251.5 156 73.7
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 5.8e-65 251.1 162 72.8
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 7.5e-65 250.8 157 74.5
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 9.9e-65 250.4 164 72.6
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 1.3e-64 250.0 154 76.0
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 3.7e-64 248.4 154 77.3
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 1.1e-63 246.9 151 77.5
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 1.4e-63 246.5 156 73.1
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 4.1e-63 245.0 159 74.2
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 7.1e-63 244.2 152 75.7
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 1.6e-62 243.0 153 73.9
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 1.6e-62 243.0 162 71.6
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 2.1e-62 242.7 156 73.7
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 2.7e-62 242.3 155 73.5
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 3.5e-62 241.9 156 73.7
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 3.5e-62 241.9 165 69.1
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 3.5e-62 241.9 156 71.8
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 3.5e-62 241.9 156 71.8
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 4.6e-62 241.5 161 72.0
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 7.8e-62 240.7 155 73.5
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 7.8e-62 240.7 161 72.0
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 1.3e-61 240.0 155 73.5
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 3.0e-61 238.8 156 71.8
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 3.0e-61 238.8 161 70.2
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 3.9e-61 238.4 157 72.6
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 5.1e-61 238.0 159 74.2
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 5.1e-61 238.0 153 72.5
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 6.6e-61 237.7 156 70.5
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 8.6e-61 237.3 155 71.6
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.1e-60 236.9 156 70.5
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.1e-60 236.9 156 70.5
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 1.5e-60 236.5 156 71.8
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 1.9e-60 236.1 155 71.0
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 3.3e-60 235.3 188 62.2
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 5.6e-60 234.6 139 77.7
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 5.6e-60 234.6 139 77.7
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 1.2e-59 233.4 153 70.6
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 1.6e-59 233.0 156 69.9
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 3.6e-59 231.9 154 71.4
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 4.7e-59 231.5 155 71.0
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 6.2e-59 231.1 153 71.9
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 6.2e-59 231.1 186 62.4
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 8.1e-59 230.7 156 71.2
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.4e-58 229.9 151 72.2
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 1.8e-58 229.6 156 69.9
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 1.8e-58 229.6 165 67.3
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 4.0e-58 228.4 165 66.7
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 1.5e-57 226.5 165 66.7
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 2.6e-57 225.7 155 71.0
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 2.2e-56 222.6 155 69.0
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 2.9e-56 222.2 152 68.4
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 1.9e-52 209.5 141 71.6
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 2.5e-52 209.1 178 60.1
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 1.6e-51 206.5 134 74.6
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 6.2e-51 204.5 142 71.1
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 9.0e-50 200.7 157 65.6
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 1.2e-46 190.3 141 66.7
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 2.1e-46 189.5 111 75.7
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 4.3e-44 181.8 111 73.9
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 8.7e-37 157.5 156 53.8
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 1.9e-36 156.4 121 64.5
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 1.1e-31 140.6 194 44.3
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 1.4e-31 140.2 87 74.7
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 9.0e-26 120.9 84 71.4
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 1.9e-23 113.2 66 78.8
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 3.5e-22 109.0 74 66.2
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 1.5e-20 103.6 67 68.7
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 4.3e-20 102.1 67 65.7
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 5.0e-16 88.6 42 90.5
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 8.2e-11 71.2 88 44.3
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 2.0e-09 66.6 81 46.9
SMO164G0257 Selaginella moellendorffii HOM05D014720 ORTHO05D377594 2.2e-08 63.2 143 34.3
Glyma.06G080700 Glycine max HOM05D006214 ORTHO05D007723 1.6e-06 57.0 62 43.5


User provided reference genes

Program Settings