Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 6.9e-282 973.4 523 100.0
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 2.1e-113 413.7 426 54.5
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.9e-110 403.3 484 49.6
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.9e-110 403.3 484 49.6
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 4.9e-110 402.5 475 52.0
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 5.4e-109 399.1 464 51.1
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.9e-107 392.9 464 50.9
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 6.6e-107 392.1 479 50.3
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.5e-106 390.2 487 49.3
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.3e-106 389.8 446 51.1
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.8e-103 379.0 432 51.2
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.1e-100 370.5 428 52.3
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 3.9e-99 366.3 466 51.1
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.1e-98 364.8 466 48.3
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.9e-98 364.0 421 51.3
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.2e-97 361.3 464 51.3
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 2.1e-97 360.5 465 48.0
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.8e-97 360.1 482 50.4
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.8e-96 357.5 472 49.8
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 9.0e-96 355.1 422 51.7
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 9.0e-96 355.1 452 48.5
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.5e-95 354.4 408 52.2
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 2.0e-95 354.0 467 47.5
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.6e-95 353.6 421 50.6
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 2.6e-95 353.6 450 48.2
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 5.8e-95 352.4 463 46.4
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.7e-94 350.9 412 51.2
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 2.2e-94 350.5 495 47.3
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 6.4e-94 349.0 463 48.4
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 8.4e-94 348.6 470 50.4
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 8.4e-94 348.6 416 51.0
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 8.4e-94 348.6 467 46.3
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 1.1e-93 348.2 466 45.9
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.4e-93 347.8 474 50.2
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 2.4e-93 347.1 474 50.2
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 5.4e-93 345.9 422 50.9
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 7.1e-93 345.5 473 47.1
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 1.6e-92 344.4 407 50.6
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 4.6e-92 342.8 427 48.9
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 3.0e-91 340.1 418 49.3
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.1e-90 338.2 461 47.1
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.5e-90 337.8 461 49.2
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 1.5e-90 337.8 475 46.5
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.5e-90 337.0 484 45.5
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 4.3e-90 336.3 455 45.5
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 4.3e-90 336.3 474 50.8
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 7.3e-90 335.5 431 46.9
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.8e-89 333.6 426 47.7
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 3.6e-89 333.2 415 46.7
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 4.0e-88 329.7 417 47.5
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 9.0e-88 328.6 423 47.8
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.2e-87 328.2 420 46.4
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.2e-87 328.2 411 50.1
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 9.9e-87 325.1 404 47.0
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.3e-86 324.7 438 47.7
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.7e-86 324.3 423 47.3
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 2.9e-86 323.6 467 45.8
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 6.4e-86 322.4 465 46.5
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.4e-86 322.4 483 47.2
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 6.4e-86 322.4 468 48.5
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 8.4e-86 322.0 413 47.9
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 1.4e-85 321.2 428 46.7
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.9e-85 320.9 487 43.1
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 2.4e-85 320.5 408 47.1
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 3.2e-85 320.1 412 48.8
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 7.1e-85 318.9 413 47.5
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 7.1e-85 318.9 408 49.5
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 7.1e-85 318.9 413 47.0
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 9.3e-85 318.5 413 45.8
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 1.2e-84 318.2 415 46.3
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.6e-84 317.8 412 46.8
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 2.7e-84 317.0 412 48.3
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 2.7e-84 317.0 477 45.1
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.7e-84 317.0 477 45.1
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.5e-84 316.6 415 48.4
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 4.6e-84 316.2 417 46.0
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 6.0e-84 315.8 412 48.1
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.0e-83 315.1 412 48.1
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.3e-83 314.7 416 45.4
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 1.8e-83 314.3 416 47.4
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 2.3e-83 313.9 472 44.3
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.3e-83 313.9 492 44.3
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 3.9e-83 313.2 428 46.3
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 5.1e-83 312.8 417 44.8
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 5.1e-83 312.8 463 42.8
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 1.1e-82 311.6 468 43.6
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 1.9e-82 310.8 469 43.5
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.9e-82 310.8 467 43.5
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 3.3e-82 310.1 455 46.4
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 3.3e-82 310.1 418 44.5
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.3e-82 310.1 453 48.1
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 7.4e-82 308.9 470 43.6
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.6e-81 307.8 488 41.8
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.8e-81 307.0 415 45.5
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 8.1e-81 305.4 413 47.9
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.1e-80 305.1 425 45.9
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.4e-80 304.7 424 46.0
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 2.4e-80 303.9 547 41.7
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 5.8e-79 299.3 418 44.3
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 9.9e-79 298.5 472 43.9
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.2e-78 297.4 444 44.4
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.2e-78 297.4 444 43.9
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.4e-77 294.7 405 42.7
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 3.2e-77 293.5 467 41.5
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 5.5e-77 292.7 414 44.7
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 5.5e-77 292.7 477 41.5
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.1e-76 290.8 442 44.6
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 2.7e-76 290.4 405 42.0
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.5e-76 290.0 489 44.6
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 6.0e-76 289.3 416 44.2
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.0e-75 288.5 440 44.8
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 3.0e-75 287.0 499 42.7
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 6.7e-75 285.8 416 45.0
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 8.7e-75 285.4 391 45.5
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.5e-74 284.6 411 45.3
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 5.6e-74 282.7 473 41.2
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 3.7e-73 280.0 442 42.1
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.4e-72 277.3 473 40.2
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.5e-71 274.6 391 44.2
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.2e-70 270.8 463 39.7
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 6.5e-70 269.2 428 41.1
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 3.2e-69 266.9 413 39.5
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.1e-66 258.5 386 44.3
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 7.4e-66 255.8 412 43.9
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 9.7e-66 255.4 418 41.1
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 9.7e-66 255.4 361 44.3
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 4.5e-63 246.5 442 38.2
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.4e-59 235.0 418 40.7
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.3e-58 229.9 477 35.6
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.9e-56 222.6 484 36.8
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 1.2e-52 211.8 621 30.8
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 1.1e-42 178.7 471 32.5
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 2.6e-39 167.5 290 42.1
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 6.5e-38 162.9 127 66.1
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 4.7e-36 156.8 150 58.7
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.2e-34 152.1 151 55.6
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 1.7e-33 148.3 349 36.1
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 6.3e-33 146.4 149 55.0
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.0e-31 141.4 294 39.1
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 4.0e-27 127.1 223 37.2
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 3.4e-26 124.0 267 39.3
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 5.7e-26 123.2 239 40.6
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 5.4e-24 116.7 132 48.5
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 9.1e-24 115.9 118 51.7
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 3.3e-21 107.5 79 65.8
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 6.1e-20 103.2 132 42.4
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.4e-19 102.1 75 65.3
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 2.8e-17 94.4 75 62.7
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 3.7e-17 94.0 94 50.0
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.9e-13 81.6 54 77.8
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 5.6e-13 80.1 108 50.9
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 2.7e-07 61.2 39 66.7


User provided reference genes

Program Settings