Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.8e-119 432.6 209 100.0
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 4.7e-48 195.3 127 70.9
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 1.5e-46 190.3 124 70.2
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.7e-45 186.8 121 71.9
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 6.4e-45 184.9 116 74.1
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 1.1e-44 184.1 129 69.0
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 1.1e-44 184.1 118 73.7
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.4e-44 183.7 118 71.2
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 1.9e-44 183.3 118 72.0
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 1.9e-44 183.3 118 71.2
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 2.4e-44 183.0 116 71.6
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 4.2e-44 182.2 148 60.1
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 4.2e-44 182.2 115 73.0
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 4.2e-44 182.2 124 67.7
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 4.2e-44 182.2 139 66.2
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 5.4e-44 181.8 131 67.2
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 5.4e-44 181.8 118 71.2
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.2e-43 180.6 119 68.9
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 1.2e-43 180.6 132 65.2
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.6e-43 180.3 116 70.7
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.6e-43 180.3 118 72.0
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 2.1e-43 179.9 121 69.4
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 2.7e-43 179.5 118 71.2
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 2.7e-43 179.5 118 72.0
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 4.6e-43 178.7 115 73.0
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 4.6e-43 178.7 148 59.5
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 4.6e-43 178.7 122 70.5
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 6.0e-43 178.3 129 63.6
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 6.0e-43 178.3 113 70.8
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 6.0e-43 178.3 118 72.0
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 6.0e-43 178.3 118 69.5
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 6.0e-43 178.3 118 70.3
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 7.8e-43 177.9 118 71.2
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 7.8e-43 177.9 135 63.0
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 7.8e-43 177.9 113 70.8
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 1.0e-42 177.6 118 68.6
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.0e-42 177.6 126 65.9
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 1.0e-42 177.6 124 66.9
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.0e-42 177.6 118 69.5
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 1.0e-42 177.6 115 72.2
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 1.3e-42 177.2 113 72.6
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 1.3e-42 177.2 113 73.5
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 1.7e-42 176.8 113 73.5
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 2.3e-42 176.4 113 71.7
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 2.3e-42 176.4 124 65.3
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.3e-42 176.4 126 65.9
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.0e-42 176.0 123 66.7
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 3.0e-42 176.0 118 69.5
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 3.0e-42 176.0 113 71.7
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 3.0e-42 176.0 115 70.4
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 6.6e-42 174.9 110 70.9
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 6.6e-42 174.9 113 70.8
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 6.6e-42 174.9 118 69.5
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 8.7e-42 174.5 126 65.1
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 8.7e-42 174.5 113 73.5
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.1e-41 174.1 164 54.9
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 1.1e-41 174.1 164 54.9
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.5e-41 173.7 119 65.5
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.9e-41 173.3 113 72.6
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.9e-41 173.3 113 72.6
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 5.6e-41 171.8 114 70.2
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 9.6e-41 171.0 146 56.2
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 9.6e-41 171.0 141 60.3
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 9.6e-41 171.0 123 67.5
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 9.6e-41 171.0 115 71.3
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 9.6e-41 171.0 188 50.0
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 9.6e-41 171.0 188 48.4
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 9.6e-41 171.0 121 67.8
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.3e-40 170.6 118 67.8
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.3e-40 170.6 118 67.8
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 2.1e-40 169.9 118 66.1
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 2.1e-40 169.9 115 67.8
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.8e-40 169.5 118 66.9
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 3.6e-40 169.1 118 66.9
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 6.2e-40 168.3 118 65.3
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 6.2e-40 168.3 118 65.3
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 6.2e-40 168.3 129 62.0
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 6.2e-40 168.3 116 67.2
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 6.2e-40 168.3 123 63.4
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 6.2e-40 168.3 111 68.5
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 1.1e-39 167.5 109 69.7
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.8e-39 166.8 119 63.0
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 2.4e-39 166.4 118 65.3
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 2.4e-39 166.4 118 65.3
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 2.4e-39 166.4 130 60.8
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 2.4e-39 166.4 124 62.1
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 2.4e-39 166.4 118 64.4
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 2.4e-39 166.4 109 68.8
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 3.1e-39 166.0 118 65.3
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 9.0e-39 164.5 113 66.4
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.4e-38 162.2 131 57.3
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 5.8e-38 161.8 109 68.8
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 2.2e-37 159.8 114 65.8
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 6.4e-37 158.3 123 59.3
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 1.4e-36 157.1 121 61.2
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 2.4e-36 156.4 120 65.8
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 4.2e-36 155.6 155 51.6
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 5.4e-36 155.2 91 76.9
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 3.0e-34 149.4 105 65.7
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 5.6e-33 145.2 179 47.5
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 2.1e-32 143.3 84 75.0
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 2.8e-32 142.9 96 68.8
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 3.6e-32 142.5 96 66.7
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.6e-32 142.5 117 56.4
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 4.8e-32 142.1 154 51.9
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 8.1e-32 141.4 113 63.7
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 8.1e-32 141.4 113 63.7
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.4e-31 140.6 110 62.7
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 2.4e-31 139.8 110 58.2
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 2.0e-30 136.7 87 69.0
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 2.0e-30 136.7 113 58.4
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 9.9e-30 134.4 118 56.8
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 3.2e-28 129.4 99 62.6
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 4.6e-27 125.6 80 75.0
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 1.0e-26 124.4 106 55.7
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 6.7e-26 121.7 78 67.9
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 3.7e-24 115.9 74 71.6
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 1.1e-23 114.4 78 60.3
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 1.4e-23 114.0 118 50.0
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 1.8e-23 113.6 87 60.9
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 2.0e-22 110.2 94 56.4
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 2.0e-22 110.2 94 56.4
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 2.0e-22 110.2 95 58.9
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.0e-22 110.2 95 58.9
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 7.6e-22 108.2 73 67.1
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 1.3e-21 107.5 94 55.3
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.9e-21 106.3 67 68.7
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 2.5e-20 103.2 69 65.2
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 3.2e-20 102.8 86 60.5
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.6e-19 99.0 84 52.4
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.3e-18 96.7 87 48.3
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 1.9e-17 93.6 119 47.1
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 7.4e-17 91.7 132 38.6
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 3.1e-15 86.3 77 51.9
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 3.8e-13 79.3 73 46.6
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 2.3e-10 70.1 41 75.6
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 2.5e-09 66.6 48 62.5
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 3.3e-09 66.2 89 44.9
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.8e-07 60.5 47 63.8


User provided reference genes

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