Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 9.7e-223 776.5 408 100.0
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 5.6e-146 521.5 355 80.3
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 6.8e-91 338.6 374 50.8
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 7.5e-90 335.1 367 50.7
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 8.3e-89 331.6 364 50.0
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 3.1e-88 329.7 360 49.7
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 4.1e-88 329.3 365 50.7
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 5.4e-88 328.9 363 49.9
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 5.4e-88 328.9 364 49.7
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 7.0e-88 328.6 362 50.0
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 9.1e-88 328.2 363 49.6
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 2.0e-87 327.0 364 49.2
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 2.0e-87 327.0 361 48.8
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 2.0e-87 327.0 363 49.9
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 2.7e-87 326.6 353 51.6
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 3.5e-87 326.2 370 48.9
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 4.5e-87 325.9 372 48.4
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 5.9e-87 325.5 365 49.0
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 5.9e-87 325.5 363 49.6
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 5.9e-87 325.5 364 49.2
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 5.9e-87 325.5 358 50.0
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 7.7e-87 325.1 362 49.2
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 1.0e-86 324.7 363 48.8
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 1.0e-86 324.7 363 49.3
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 1.0e-86 324.7 364 49.7
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 1.3e-86 324.3 360 50.3
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 1.7e-86 323.9 363 48.8
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 1.7e-86 323.9 364 48.1
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.3e-86 323.6 363 48.2
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 2.3e-86 323.6 366 48.9
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 2.3e-86 323.6 364 47.3
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 2.9e-86 323.2 366 48.6
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 3.8e-86 322.8 364 47.5
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 6.6e-86 322.0 367 49.0
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 8.6e-86 321.6 364 47.0
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 8.6e-86 321.6 364 47.0
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 8.6e-86 321.6 364 46.7
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 1.1e-85 321.2 366 49.2
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 1.1e-85 321.2 369 48.8
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 1.1e-85 321.2 365 49.6
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 1.9e-85 320.5 365 49.3
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 1.9e-85 320.5 366 48.4
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 2.5e-85 320.1 366 48.4
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 2.5e-85 320.1 363 48.2
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 4.2e-85 319.3 366 48.1
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 4.2e-85 319.3 364 48.6
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 5.5e-85 318.9 364 48.4
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 7.2e-85 318.5 365 49.0
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 7.2e-85 318.5 364 46.7
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 7.2e-85 318.5 365 47.9
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 9.5e-85 318.2 364 48.1
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 1.2e-84 317.8 366 47.8
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 2.1e-84 317.0 368 49.2
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 2.1e-84 317.0 365 47.7
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 2.8e-84 316.6 365 47.7
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 3.6e-84 316.2 364 48.1
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 1.0e-83 314.7 363 48.5
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 1.0e-83 314.7 366 48.6
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 1.4e-83 314.3 357 50.4
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 2.3e-83 313.5 364 47.3
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 5.2e-83 312.4 363 48.5
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 6.8e-83 312.0 364 46.4
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 1.2e-82 311.2 364 46.7
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 1.2e-82 311.2 363 46.8
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 2.0e-82 310.5 363 48.8
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 2.0e-82 310.5 364 47.5
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 2.6e-82 310.1 368 47.3
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 4.4e-82 309.3 364 46.7
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 4.4e-82 309.3 364 46.7
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 4.4e-82 309.3 363 47.9
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 4.4e-82 309.3 364 47.3
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 5.7e-82 308.9 364 47.3
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 7.5e-82 308.5 353 49.0
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 7.5e-82 308.5 366 47.3
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 9.8e-82 308.1 364 46.2
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 1.7e-81 307.4 363 47.4
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 1.7e-81 307.4 365 47.7
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 2.8e-81 306.6 364 45.9
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 4.9e-81 305.8 358 48.0
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 6.3e-81 305.4 364 46.7
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 5.4e-80 302.4 326 51.2
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 2.0e-79 300.4 366 47.5
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 2.7e-79 300.1 366 46.2
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 1.3e-78 297.7 363 45.5
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 2.3e-78 297.0 365 45.8
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 2.3e-78 297.0 365 45.8
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 6.6e-78 295.4 365 47.1
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.1e-77 294.7 353 47.3
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 9.5e-77 291.6 362 46.7
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 1.2e-76 291.2 365 45.2
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 1.4e-75 287.7 364 45.6
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 1.4e-75 287.7 369 45.5
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 3.1e-75 286.6 366 45.6
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 3.1e-75 286.6 366 45.6
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 4.0e-75 286.2 365 45.8
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 8.9e-75 285.0 368 44.8
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 8.9e-75 285.0 366 45.1
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 8.9e-75 285.0 365 45.8
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 2.0e-74 283.9 366 45.1
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 5.8e-74 282.3 366 44.3
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 9.8e-74 281.6 366 44.3
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 1.3e-73 281.2 365 44.9
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 1.3e-73 281.2 365 44.9
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 1.7e-73 280.8 366 44.3
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 1.7e-73 280.8 366 43.4
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 2.9e-73 280.0 365 44.7
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 3.7e-73 279.6 366 45.1
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 1.4e-72 277.7 347 45.2
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 3.2e-72 276.6 365 43.6
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.6e-68 264.2 356 44.7
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 2.1e-68 263.8 324 47.5
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.3e-62 244.6 362 40.6
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 8.6e-62 241.9 227 58.6
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 3.9e-46 189.9 164 57.3
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.9e-40 171.0 372 35.2
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 4.2e-40 169.9 255 40.8
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.5e-37 160.6 254 39.8
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.5e-29 134.8 113 60.2
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 1.3e-20 105.1 96 50.0
SEGI_35931 Sequoiadendron giganteum HOM05D001116 ORTHO05D001028 2.8e-20 104.0 105 55.2
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 8.2e-20 102.4 96 49.0
SEGI_24658 Sequoiadendron giganteum HOM05D000285 ORTHO05D000241 3.8e-17 93.6 94 58.5
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 3.4e-10 70.5 169 32.5
SEGI_06662 Sequoiadendron giganteum HOM05D000286 ORTHO05D000170 5.9e-10 69.7 62 62.9
SEGI_36872 Sequoiadendron giganteum HOM05D001839 ORTHO05D001867 7.7e-10 69.3 93 46.2
SEGI_19262 Sequoiadendron giganteum HOM05D002752 ORTHO05D000007 1.4e-08 65.1 78 50.0
SEGI_02017 Sequoiadendron giganteum HOM05D005522 ORTHO05D007414 7.2e-08 62.8 96 42.7
SEGI_31933 Sequoiadendron giganteum HOM05D000504 ORTHO05D000403 3.9e-06 57.0 79 43.0
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 6.7e-06 56.2 96 45.8


User provided reference genes

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