Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.5e-236 820.8 404 100.0
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.1e-123 445.3 342 62.3
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 4.5e-119 432.2 297 68.7
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 4.2e-93 345.9 253 65.2
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 3.6e-68 263.1 243 54.7
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.8e-64 250.8 235 49.4
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 2.1e-44 184.1 236 39.0
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 2.0e-42 177.6 228 41.7
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 7.8e-39 165.6 261 39.8
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 5.2e-35 152.9 214 39.3
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.2e-35 152.9 189 43.9
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.7e-33 147.9 215 38.1
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 4.1e-32 143.3 201 39.3
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 1.2e-31 141.7 189 40.7
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.6e-31 139.8 189 40.2
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 6.0e-31 139.4 190 41.6
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 2.3e-30 137.5 190 41.1
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 3.0e-30 137.1 189 39.7
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 3.0e-30 137.1 189 39.2
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 3.0e-30 137.1 189 40.2
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 3.9e-30 136.7 215 35.8
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 3.9e-30 136.7 189 38.6
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 3.9e-30 136.7 218 35.8
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 3.9e-30 136.7 189 38.6
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 3.9e-30 136.7 189 39.2
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 5.1e-30 136.3 189 39.2
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 5.1e-30 136.3 189 39.2
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 6.6e-30 136.0 189 38.1
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 6.6e-30 136.0 189 39.7
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 6.6e-30 136.0 190 40.5
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 8.6e-30 135.6 189 38.1
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.1e-29 135.2 189 38.1
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 1.1e-29 135.2 189 37.6
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.1e-29 135.2 191 40.8
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.1e-29 135.2 189 37.6
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.5e-29 134.8 189 37.6
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 1.5e-29 134.8 189 37.6
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 1.9e-29 134.4 189 37.6
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 1.9e-29 134.4 189 37.6
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.9e-29 134.4 189 39.2
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 1.9e-29 134.4 189 38.6
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.9e-29 134.4 189 37.6
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.9e-29 134.4 189 38.1
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 1.9e-29 134.4 189 39.2
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 2.5e-29 134.0 189 39.2
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.5e-29 134.0 189 38.6
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.5e-29 134.0 189 38.1
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.5e-29 134.0 189 38.1
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 2.5e-29 134.0 189 38.1
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 3.3e-29 133.7 189 38.6
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.3e-29 133.7 189 37.6
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 3.3e-29 133.7 190 39.5
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 3.3e-29 133.7 190 40.5
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 3.3e-29 133.7 189 39.2
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 3.3e-29 133.7 189 39.2
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 3.3e-29 133.7 189 38.1
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 3.3e-29 133.7 190 40.0
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 3.3e-29 133.7 190 40.5
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 3.3e-29 133.7 190 40.0
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 4.3e-29 133.3 215 38.1
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 4.3e-29 133.3 189 38.6
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 4.3e-29 133.3 189 39.2
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 5.6e-29 132.9 189 38.1
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 7.3e-29 132.5 218 35.3
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 7.3e-29 132.5 215 36.3
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 7.3e-29 132.5 189 38.6
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 7.3e-29 132.5 192 39.6
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 7.3e-29 132.5 189 37.6
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 7.3e-29 132.5 189 38.1
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 7.3e-29 132.5 189 37.6
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 9.5e-29 132.1 216 37.0
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 9.5e-29 132.1 218 35.3
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 9.5e-29 132.1 215 37.7
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 9.5e-29 132.1 189 38.1
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.2e-28 131.7 189 37.6
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.2e-28 131.7 189 38.6
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.2e-28 131.7 189 38.6
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 1.2e-28 131.7 192 39.1
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.6e-28 131.3 189 37.6
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.1e-28 131.0 189 38.6
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 2.1e-28 131.0 189 37.6
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 2.1e-28 131.0 189 38.1
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 2.8e-28 130.6 189 37.0
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.8e-28 130.6 189 38.1
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 3.6e-28 130.2 183 37.7
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 4.7e-28 129.8 189 37.0
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 4.7e-28 129.8 189 37.6
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 4.7e-28 129.8 189 38.1
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 4.7e-28 129.8 192 39.6
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 6.2e-28 129.4 189 38.1
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 8.1e-28 129.0 189 37.0
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 8.1e-28 129.0 189 37.0
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 8.1e-28 129.0 189 38.1
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.1e-27 128.6 189 37.0
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.1e-27 128.6 190 37.9
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 1.4e-27 128.3 189 37.0
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.8e-27 127.9 189 36.5
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 3.1e-27 127.1 189 36.5
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 3.1e-27 127.1 189 36.5
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 3.1e-27 127.1 189 37.0
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 4.0e-27 126.7 189 39.2
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 5.2e-27 126.3 189 37.0
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 6.8e-27 125.9 190 40.0
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 8.9e-27 125.6 189 37.0
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 8.9e-27 125.6 189 37.0
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 8.9e-27 125.6 189 36.5
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 1.2e-26 125.2 214 35.5
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 3.4e-26 123.6 214 34.1
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 3.4e-26 123.6 203 36.5
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 7.5e-26 122.5 189 37.0
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.7e-25 121.3 214 35.0
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.9e-25 119.8 225 32.9
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 8.3e-25 119.0 253 30.0
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.1e-24 118.6 193 36.3
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 5.4e-24 116.3 189 35.4
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 5.4e-24 116.3 233 32.2
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 9.2e-24 115.5 189 34.9
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 9.2e-24 115.5 189 34.9
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 9.2e-24 115.5 189 34.9
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 9.2e-24 115.5 157 39.5
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 9.2e-24 115.5 185 37.3
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.2e-23 115.2 191 36.1
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 1.6e-23 114.8 193 35.8
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 3.5e-23 113.6 185 36.2
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.2e-20 105.1 154 39.6
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.4e-19 101.7 227 33.0
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.4e-19 100.9 210 31.9
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 6.4e-17 92.8 158 32.9
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.7e-15 87.4 101 45.5
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 6.6e-14 82.8 95 46.3
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 7.3e-13 79.3 95 43.2
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 1.6e-12 78.2 123 34.1
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 2.8e-12 77.4 123 33.3
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 9.9e-10 68.9 101 34.7
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 3.8e-09 67.0 116 37.1
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.2e-08 63.9 79 43.0
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.6e-07 61.6 53 54.7
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 6.0e-07 59.7 60 46.7
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 7.8e-07 59.3 233 27.0
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.7e-06 58.2 53 56.6
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.7e-06 58.2 255 22.7
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.3e-06 57.8 255 22.7
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 3.0e-06 57.4 205 24.4
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 3.9e-06 57.0 46 60.9
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 5.1e-06 56.6 166 28.3
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 5.1e-06 56.6 168 27.4
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 6.6e-06 56.2 166 29.5
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 6.6e-06 56.2 166 28.9
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 6.6e-06 56.2 364 24.7


User provided reference genes

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