Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 8.6e-69 263.5 127 100.0
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 4.9e-32 141.4 72 100.0
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 3.6e-14 82.0 67 62.7
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 6.1e-14 81.3 64 65.6
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 5.1e-13 78.2 73 56.2
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 8.8e-13 77.4 70 55.7
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 3.3e-12 75.5 70 55.7
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 4.3e-12 75.1 67 56.7
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 5.7e-12 74.7 70 57.1
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 5.7e-12 74.7 66 57.6
Thecc.01G037000 Theobroma cacao HOM05D003234 ORTHO05D003635 5.7e-12 74.7 68 55.9
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 5.7e-12 74.7 71 54.9
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 7.4e-12 74.3 73 52.1
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 7.4e-12 74.3 71 54.9
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 9.7e-12 73.9 70 54.3
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.3e-11 73.6 70 55.7
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.3e-11 73.6 71 54.9
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 1.3e-11 73.6 71 53.5
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 1.7e-11 73.2 70 50.0
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 1.7e-11 73.2 71 54.9
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 1.7e-11 73.2 71 53.5
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 1.7e-11 73.2 71 53.5
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 1.7e-11 73.2 66 57.6
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 1.7e-11 73.2 66 56.1
vmacro04393 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 1.7e-11 73.2 71 53.5
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 2.2e-11 72.8 71 52.1
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 2.2e-11 72.8 71 52.1
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.2e-11 72.8 71 53.5
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.2e-11 72.8 71 53.5
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.2e-11 72.8 71 53.5
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 2.8e-11 72.4 71 53.5
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 2.8e-11 72.4 71 53.5
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 2.8e-11 72.4 74 52.7
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 2.8e-11 72.4 73 53.4
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 2.8e-11 72.4 71 53.5
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 3.7e-11 72.0 71 53.5
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 3.7e-11 72.0 66 56.1
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 3.7e-11 72.0 71 53.5
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 3.7e-11 72.0 71 53.5
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 4.8e-11 71.6 71 53.5
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 4.8e-11 71.6 73 52.1
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 4.8e-11 71.6 70 52.9
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 4.8e-11 71.6 71 52.1
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 4.8e-11 71.6 71 52.1
Migut.H00998 Erythranthe guttata HOM05D003234 ORTHO05D003635 4.8e-11 71.6 70 51.4
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 4.8e-11 71.6 71 53.5
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 6.3e-11 71.2 71 52.1
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 6.3e-11 71.2 71 53.5
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 6.3e-11 71.2 71 49.3
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 6.3e-11 71.2 71 53.5
Sopen02g030060 Solanum pennellii HOM05D003234 ORTHO05D003635 6.3e-11 71.2 70 55.7
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 8.2e-11 70.9 71 53.5
Gohir.D10G092900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 8.2e-11 70.9 68 52.9
Gorai.011G102100 Gossypium raimondii HOM05D003234 ORTHO05D003635 8.2e-11 70.9 68 52.9
HanXRQChr12g0366591 Helianthus annuus HOM05D003234 ORTHO05D003635 8.2e-11 70.9 71 49.3
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 8.2e-11 70.9 71 52.1
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 8.2e-11 70.9 70 51.4
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 8.2e-11 70.9 71 53.5
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 1.1e-10 70.5 71 52.1
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 1.1e-10 70.5 66 56.1
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 1.1e-10 70.5 71 52.1
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 1.1e-10 70.5 71 52.1
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 1.1e-10 70.5 71 52.1
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 1.1e-10 70.5 71 52.1
BolC5t30606H Brassica oleracea HOM05D003234 ORTHO05D003635 1.1e-10 70.5 71 52.1
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 1.1e-10 70.5 71 52.1
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 1.1e-10 70.5 71 52.1
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 1.1e-10 70.5 66 54.5
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.1e-10 70.5 71 52.1
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 1.1e-10 70.5 71 52.1
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 1.1e-10 70.5 72 51.4
AagrBONN_evm.TU.Sc2ySwM_344.3603 Anthoceros agrestis HOM05D003234 ORTHO05D003635 1.4e-10 70.1 62 58.1
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.4e-10 70.1 72 51.4
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 1.4e-10 70.1 72 51.4
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 1.4e-10 70.1 71 52.1
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 1.4e-10 70.1 73 52.1
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 1.4e-10 70.1 69 52.2
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 1.4e-10 70.1 71 50.7
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 1.4e-10 70.1 75 52.0
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.8e-10 69.7 71 52.1
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.8e-10 69.7 71 52.1
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 1.8e-10 69.7 71 52.1
ECA233G0660 Erigeron canadensis HOM05D003234 ORTHO05D003635 1.8e-10 69.7 71 50.7
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 1.8e-10 69.7 73 50.7
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.8e-10 69.7 73 52.1
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.8e-10 69.7 73 52.1
PSO210G7820 Papaver somniferum HOM05D003234 ORTHO05D003635 1.8e-10 69.7 73 50.7
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 1.8e-10 69.7 72 51.4
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 1.8e-10 69.7 71 52.1
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 1.8e-10 69.7 71 52.1
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 1.8e-10 69.7 71 52.1
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 1.8e-10 69.7 71 52.1
Ciclev10026821m.g Citrus clementina HOM05D003234 ORTHO05D003635 2.4e-10 69.3 74 50.0
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 2.4e-10 69.3 70 54.3
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 2.4e-10 69.3 72 51.4
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 2.4e-10 69.3 71 53.5
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.4e-10 69.3 71 52.1
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 2.4e-10 69.3 71 50.7
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 2.4e-10 69.3 71 50.7
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 2.4e-10 69.3 72 50.0
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 3.1e-10 68.9 70 51.4
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.1e-10 68.9 71 50.7
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.1e-10 68.9 71 47.9
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 3.1e-10 68.9 71 50.7
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 3.1e-10 68.9 72 50.0
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 3.1e-10 68.9 71 50.7
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 3.1e-10 68.9 73 50.7
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 3.1e-10 68.9 73 50.7
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 3.1e-10 68.9 73 50.7
CDE02G3043 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 4.1e-10 68.6 53 67.9
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 4.1e-10 68.6 66 54.5
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 4.1e-10 68.6 71 50.7
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 4.1e-10 68.6 72 51.4
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 4.1e-10 68.6 71 50.7
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 5.3e-10 68.2 71 50.7
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 5.3e-10 68.2 71 50.7
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 5.3e-10 68.2 71 50.7
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 5.3e-10 68.2 71 50.7
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 5.3e-10 68.2 70 50.0
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 5.3e-10 68.2 65 53.8
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 5.3e-10 68.2 66 53.0
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 5.3e-10 68.2 71 50.7
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 5.3e-10 68.2 68 50.0
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 6.9e-10 67.8 71 49.3
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 6.9e-10 67.8 72 51.4
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 6.9e-10 67.8 66 54.5
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 9.1e-10 67.4 72 48.6
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 9.1e-10 67.4 72 48.6
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.2e-09 67.0 71 49.3
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.2e-09 67.0 71 46.5
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 1.5e-09 66.6 68 50.0
QL02p013773 Quercus lobata HOM05D003234 ORTHO05D003635 1.5e-09 66.6 95 42.1
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 1.5e-09 66.6 70 48.6
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 1.5e-09 66.6 65 53.8
Gohir.A10G095000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.0e-09 66.2 68 51.5
Lsat_1_v5_gn_8_27741 Lactuca sativa HOM05D003234 ORTHO05D003635 2.0e-09 66.2 70 48.6
PSO170G0681 Papaver somniferum HOM05D003234 ORTHO05D003635 2.0e-09 66.2 66 51.5
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 2.6e-09 65.9 71 50.7
Psat4g092120 Pisum sativum HOM05D003234 ORTHO05D003635 2.6e-09 65.9 68 52.9
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 2.6e-09 65.9 71 50.7
TPR.G34985 Trifolium pratense HOM05D003234 ORTHO05D003635 2.6e-09 65.9 68 55.9
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 3.4e-09 65.5 70 45.7
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 3.4e-09 65.5 73 47.9
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 4.5e-09 65.1 70 50.0
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 7.7e-09 64.3 72 47.2
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 7.7e-09 64.3 71 49.3
Lj4g0023984 Lotus japonicus HOM05D003234 ORTHO05D003635 1.0e-08 63.9 68 52.9
Gohir.D12G065100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.3e-08 63.5 68 47.1
Gorai.008G068300 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.3e-08 63.5 68 47.1
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 1.3e-08 63.5 66 50.0
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 2.2e-08 62.8 70 45.7
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 3.8e-08 62.0 64 54.7
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 3.8e-08 62.0 64 54.7
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 3.8e-08 62.0 73 45.2
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 6.5e-08 61.2 71 46.5
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 6.5e-08 61.2 66 47.0
COL.COLO4_21608 Corchorus olitorius HOM05D003234 ORTHO05D003635 1.1e-07 60.5 36 77.8
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 1.4e-07 60.1 75 44.0
Glyma.01G175400 Glycine max HOM05D003234 ORTHO05D003635 1.4e-07 60.1 68 47.1
Lalb_Chr08g0246351 Lupinus albus HOM05D003234 ORTHO05D003635 1.4e-07 60.1 90 40.0
SHI08007 Sapria himalayana HOM05D003234 ORTHO05D003635 1.4e-07 60.1 73 43.8
Rhsim07G0254000 Rhododendron simsii HOM05D003234 ORTHO05D003635 1.9e-07 59.7 43 62.8
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 2.5e-07 59.3 65 46.2
Dinv39975 Davidia involucrata HOM05D003234 ORTHO05D003635 2.5e-07 59.3 70 47.1
BcaC08g45540 Brassica carinata HOM05D003234 ORTHO05D003635 3.2e-07 58.9 36 75.0
BolC6t38341H Brassica oleracea HOM05D003234 ORTHO05D003635 3.2e-07 58.9 36 75.0
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 4.2e-07 58.5 66 48.5
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 4.2e-07 58.5 69 44.9
Lalb_Chr09g0322471 Lupinus albus HOM05D003234 ORTHO05D003635 4.2e-07 58.5 68 47.1
Atru.chr3.563 Acer truncatum HOM05D003234 ORTHO05D003635 5.5e-07 58.2 68 51.5
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 5.5e-07 58.2 65 49.2
Glyma.11G067600 Glycine max HOM05D003234 ORTHO05D003635 7.2e-07 57.8 68 47.1
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 7.2e-07 57.8 74 45.9
TAR628G0584 Trochodendron aralioides HOM05D003234 ORTHO05D003635 7.2e-07 57.8 70 44.3
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 9.4e-07 57.4 64 45.3
Sabra05G0191800 Salix brachista HOM05D003234 ORTHO05D003635 1.2e-06 57.0 36 69.4
CiPaw.02G016600 Carya illinoinensis HOM05D003234 ORTHO05D003635 2.1e-06 56.2 70 45.7
Nn1g05018 Nelumbo nucifera HOM05D003234 ORTHO05D003635 2.1e-06 56.2 65 44.6
TAR376G0434 Trochodendron aralioides HOM05D003234 ORTHO05D003635 2.7e-06 55.8 36 69.4
CSS0034652 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 3.6e-06 55.5 70 45.7
Migut.L00515 Erythranthe guttata HOM05D003234 ORTHO05D003635 3.6e-06 55.5 68 41.2
Lalb_Chr11g0061721 Lupinus albus HOM05D003234 ORTHO05D003635 3.6e-06 55.5 78 41.0
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 6.1e-06 54.7 72 45.8
HanXRQChr14g0428701 Helianthus annuus HOM05D003234 ORTHO05D003635 7.9e-06 54.3 75 44.0


User provided reference genes

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