Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 0.0e+00 1454.9 859 100.0
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 1.5e-127 461.5 827 47.4
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 9.1e-122 442.2 824 47.0
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 2.7e-121 440.7 806 47.8
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 5.9e-121 439.5 795 46.4
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 7.7e-121 439.1 826 46.5
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 4.2e-119 433.3 757 46.9
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 5.6e-119 433.0 796 46.6
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 7.2e-119 432.6 798 46.2
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 1.2e-118 431.8 796 46.0
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 6.1e-118 429.5 810 45.9
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 1.0e-117 428.7 798 46.5
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.4e-117 428.3 810 45.8
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 2.3e-117 427.6 796 46.5
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 4.4e-116 423.3 810 45.6
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 8.3e-115 419.1 802 45.5
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 1.4e-114 418.3 810 39.6
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 3.2e-114 417.2 805 44.7
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 3.2e-114 417.2 805 44.7
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 4.1e-114 416.8 797 45.9
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 1.2e-113 415.2 807 46.5
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 4.6e-113 413.3 809 46.2
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 5.9e-113 412.9 806 45.9
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 5.9e-113 412.9 806 45.9
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 7.8e-113 412.5 809 44.9
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.0e-112 412.1 793 40.2
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 3.9e-112 410.2 850 43.3
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 1.9e-111 407.9 810 45.1
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 3.3e-111 407.1 828 46.1
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 4.3e-111 406.8 816 44.5
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 7.3e-111 406.0 826 45.8
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 1.6e-110 404.8 848 43.2
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 2.8e-110 404.1 720 49.0
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 2.3e-109 401.0 803 44.5
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 2.3e-109 401.0 799 46.1
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 1.2e-108 398.7 860 37.4
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 1.3e-107 395.2 672 49.4
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 1.7e-107 394.8 814 45.5
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.7e-107 394.8 801 45.1
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 2.2e-107 394.4 798 39.5
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 2.9e-107 394.0 803 44.7
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 4.9e-107 393.3 791 43.5
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 1.9e-106 391.3 832 43.9
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 1.9e-106 391.3 872 42.0
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 2.4e-106 391.0 697 49.6
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.2e-105 388.7 810 44.7
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 1.6e-105 388.3 805 44.1
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 2.7e-105 387.5 801 45.4
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 7.8e-105 386.0 820 45.2
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 1.0e-104 385.6 810 44.3
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 2.3e-104 384.4 777 45.9
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 2.3e-104 384.4 804 43.5
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 3.0e-104 384.0 849 43.2
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 3.0e-104 384.0 804 44.4
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 3.9e-104 383.6 801 39.1
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 3.9e-104 383.6 802 44.6
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.5e-103 381.7 806 45.5
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 2.5e-103 380.9 716 46.8
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 3.3e-103 380.6 739 45.7
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.6e-102 378.3 783 42.3
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 2.1e-102 377.9 802 44.8
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 2.1e-102 377.9 711 46.4
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 3.6e-102 377.1 715 48.3
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 4.7e-102 376.7 800 43.1
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 6.2e-102 376.3 817 38.4
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 1.1e-101 375.6 797 44.4
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 1.4e-101 375.2 762 45.9
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 4.0e-101 373.6 804 36.7
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.5e-100 371.7 822 38.4
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 2.0e-100 371.3 804 36.6
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 2.0e-100 371.3 800 43.9
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 2.0e-100 371.3 804 43.4
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 2.6e-100 370.9 802 43.3
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 1.3e-99 368.6 710 48.0
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 4.9e-99 366.7 810 42.7
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 4.9e-99 366.7 840 43.2
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 6.4e-99 366.3 678 50.4
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 3.2e-98 364.0 808 34.5
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 4.1e-98 363.6 760 43.8
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 4.1e-98 363.6 751 45.3
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 9.5e-95 352.4 801 42.4
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 9.5e-95 352.4 741 39.4
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 2.3e-93 347.8 775 44.9
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 4.0e-93 347.1 811 42.8
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 6.8e-93 346.3 799 42.9
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 7.6e-92 342.8 810 40.2
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 1.4e-90 338.6 805 42.7
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 3.0e-88 330.9 764 43.6
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 7.3e-87 326.2 800 29.2
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 4.3e-79 300.4 726 43.8
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 1.0e-72 279.3 614 47.9
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 4.0e-69 267.3 507 42.4
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 1.4e-61 242.3 499 39.3
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 3.1e-53 214.5 679 27.8
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 3.4e-52 211.1 542 47.4
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 4.6e-41 174.1 334 48.5
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 7.9e-41 173.3 361 45.2
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 4.3e-39 167.5 556 44.6
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 1.3e-38 166.0 217 36.4
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 2.2e-27 128.6 254 37.8
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 2.2e-27 128.6 335 44.5
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 9.7e-23 113.2 254 32.7
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.8e-22 111.7 177 41.8
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 3.4e-15 88.2 171 57.9
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 2.2e-14 85.5 183 31.7
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 9.1e-13 80.1 106 35.8
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 1.2e-12 79.7 126 35.7
PRCOL_00006441 Prasinoderma coloniale HOM05D007104 ORTHO05D008851 4.7e-09 67.8 189 28.0
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 1.8e-08 65.9 208 25.0
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 7.5e-07 60.5 117 30.8
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 7.5e-07 60.5 117 30.8
GSVIVG01032162001 Vitis vinifera HOM05D001779 ORTHO05D001753 7.5e-07 60.5 139 26.6
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 9.8e-07 60.1 139 26.6
PSO017G7226 Papaver somniferum HOM05D000001 ORTHO05D000003 9.8e-07 60.1 163 28.8
Pp3c6_23550 Physcomitrium patens HOM05D000001 ORTHO05D308586 9.8e-07 60.1 147 26.5
Prupe.2G019900 Prunus persica HOM05D001779 ORTHO05D001753 9.8e-07 60.1 139 28.8
HPP92_004306 Vanilla planifolia HOM05D000001 ORTHO05D007291 9.8e-07 60.1 270 24.4
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.7e-06 59.3 117 30.8
CiPaw.07G003400 Carya illinoinensis HOM05D000001 ORTHO05D000003 2.2e-06 58.9 158 26.6
Hma1.2p1_0497F.1_g166300 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 2.8e-06 58.5 213 23.0
Hma1.2p1_0497F.1_g166310 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 2.8e-06 58.5 213 23.0
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 2.8e-06 58.5 117 29.9
AagrBONN_evm.TU.Sc2ySwM_344.3289 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.3e-06 57.4 155 26.5
Os02g0679200 Oryza sativa ssp. japonica HOM05D007383 ORTHO05D009254 6.3e-06 57.4 159 27.0
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 8.3e-06 57.0 157 27.4
Gohir.A11G240200 Gossypium hirsutum HOM05D000001 ORTHO05D000003 8.3e-06 57.0 119 29.4


User provided reference genes

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