Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02132 Sequoiadendron giganteum HOM05D003702 ORTHO05D004653 5.5e-107 391.0 195 100.0
CSS0043066 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 2.7e-45 186.0 128 73.4
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 3.5e-45 185.7 127 74.0
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 1.3e-44 183.7 127 70.1
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 2.3e-44 183.0 127 70.1
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 1.1e-43 180.6 127 67.7
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 1.1e-43 180.6 127 71.7
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 1.1e-43 180.6 127 69.3
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 1.9e-43 179.9 127 68.5
Cpa.g.sc65.87 Carica papaya HOM05D003702 ORTHO05D004653 2.5e-43 179.5 127 69.3
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.5e-43 179.5 127 69.3
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.5e-43 179.5 127 69.3
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 2.5e-43 179.5 127 69.3
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 2.5e-43 179.5 127 69.3
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 3.3e-43 179.1 113 73.5
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 4.3e-43 178.7 127 67.7
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 4.3e-43 178.7 127 67.7
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 7.3e-43 177.9 111 75.7
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 7.3e-43 177.9 127 70.1
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 7.3e-43 177.9 127 68.5
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 1.6e-42 176.8 127 67.7
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 2.8e-42 176.0 127 66.1
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 2.8e-42 176.0 127 69.3
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 3.6e-42 175.6 127 66.9
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 3.6e-42 175.6 127 66.9
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 3.6e-42 175.6 119 71.4
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 3.6e-42 175.6 111 76.6
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 4.7e-42 175.3 127 67.7
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 4.7e-42 175.3 127 67.7
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 4.7e-42 175.3 127 66.9
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.7e-42 175.3 127 66.9
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.7e-42 175.3 127 66.9
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.7e-42 175.3 127 66.9
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.7e-42 175.3 127 66.9
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.7e-42 175.3 127 66.9
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 4.7e-42 175.3 127 68.5
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 4.7e-42 175.3 111 75.7
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 6.2e-42 174.9 111 73.9
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 6.2e-42 174.9 127 67.7
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 6.2e-42 174.9 127 66.9
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 6.2e-42 174.9 127 66.9
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 6.2e-42 174.9 110 73.6
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 6.2e-42 174.9 111 74.8
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 8.1e-42 174.5 111 73.9
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 8.1e-42 174.5 128 69.5
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 1.1e-41 174.1 127 67.7
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 1.1e-41 174.1 126 67.5
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 1.1e-41 174.1 127 67.7
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 1.1e-41 174.1 111 73.9
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 1.1e-41 174.1 110 73.6
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 1.1e-41 174.1 127 67.7
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 1.1e-41 174.1 109 75.2
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 1.4e-41 173.7 98 84.7
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 1.4e-41 173.7 98 84.7
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.4e-41 173.7 127 66.1
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 1.8e-41 173.3 111 73.9
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 2.4e-41 172.9 127 67.7
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 2.4e-41 172.9 109 74.3
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 2.4e-41 172.9 127 65.4
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 3.1e-41 172.6 127 66.1
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 4.0e-41 172.2 112 75.0
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 4.0e-41 172.2 127 67.7
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 4.0e-41 172.2 127 66.9
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 4.0e-41 172.2 112 75.9
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 4.0e-41 172.2 127 65.4
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 5.2e-41 171.8 127 66.1
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 5.2e-41 171.8 116 70.7
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 5.2e-41 171.8 127 67.7
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 6.8e-41 171.4 98 83.7
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 6.8e-41 171.4 98 82.7
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 6.8e-41 171.4 98 83.7
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 6.8e-41 171.4 98 83.7
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 6.8e-41 171.4 98 82.7
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 6.8e-41 171.4 127 66.1
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 6.8e-41 171.4 127 64.6
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 8.9e-41 171.0 128 68.0
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 8.9e-41 171.0 113 70.8
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 8.9e-41 171.0 127 65.4
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 1.2e-40 170.6 109 74.3
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 1.2e-40 170.6 111 73.0
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 1.2e-40 170.6 127 66.1
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 1.2e-40 170.6 111 73.9
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 1.5e-40 170.2 98 81.6
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 1.5e-40 170.2 98 81.6
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 1.5e-40 170.2 110 72.7
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 1.5e-40 170.2 127 67.7
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 2.0e-40 169.9 126 68.3
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 2.0e-40 169.9 98 81.6
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 2.0e-40 169.9 103 78.6
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 2.0e-40 169.9 98 81.6
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 2.0e-40 169.9 127 66.1
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 2.6e-40 169.5 109 72.5
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 2.6e-40 169.5 98 81.6
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 2.6e-40 169.5 97 82.5
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.6e-40 169.5 118 68.6
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 2.6e-40 169.5 127 65.4
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 2.6e-40 169.5 127 65.4
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 3.4e-40 169.1 102 76.5
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 3.4e-40 169.1 116 69.0
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 3.4e-40 169.1 127 67.7
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 3.4e-40 169.1 127 66.1
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 4.4e-40 168.7 127 65.4
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 4.4e-40 168.7 127 67.7
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 7.6e-40 167.9 98 80.6
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 7.6e-40 167.9 98 80.6
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 9.9e-40 167.5 109 71.6
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 9.9e-40 167.5 127 64.6
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 9.9e-40 167.5 99 78.8
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 9.9e-40 167.5 127 66.1
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.3e-39 167.2 127 67.7
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.7e-39 166.8 127 66.1
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 1.7e-39 166.8 116 69.8
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 2.2e-39 166.4 111 69.4
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 2.2e-39 166.4 114 69.3
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.9e-39 166.0 118 67.8
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 2.9e-39 166.0 127 66.9
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 4.9e-39 165.2 102 77.5
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 4.9e-39 165.2 116 68.1
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 4.9e-39 165.2 99 76.8
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 6.4e-39 164.9 112 72.3
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 6.4e-39 164.9 102 73.5
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 6.4e-39 164.9 111 71.2
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 8.4e-39 164.5 127 63.8
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 8.4e-39 164.5 127 64.6
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.1e-38 164.1 127 65.4
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 1.9e-38 163.3 114 68.4
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 1.9e-38 163.3 127 64.6
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 1.9e-38 163.3 127 64.6
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 1.9e-38 163.3 121 66.1
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 2.4e-38 162.9 124 64.5
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 7.1e-38 161.4 127 63.8
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 9.2e-38 161.0 160 55.0
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 9.2e-38 161.0 127 63.0
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 1.2e-37 160.6 127 63.0
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 1.6e-37 160.2 127 63.0
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 2.1e-37 159.8 144 60.4
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 4.6e-37 158.7 160 54.4
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 4.6e-37 158.7 114 65.8
Os01g0118300 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 1.3e-36 157.1 98 72.4
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 2.3e-36 156.4 143 57.3
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 3.9e-36 155.6 110 66.4
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 1.1e-35 154.1 98 73.5
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 1.9e-35 153.3 160 54.4
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.9e-35 153.3 109 64.2
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 1.6e-34 150.2 160 52.5
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 2.8e-34 149.4 114 64.0
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 6.9e-33 144.8 160 52.5
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 2.0e-32 143.3 124 56.5
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 5.8e-32 141.7 127 59.1
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 6.0e-29 131.7 104 62.5
Aqoxy6G00509 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 4.3e-27 125.6 74 81.1
SEGI_30967 Sequoiadendron giganteum HOM05D001210 ORTHO05D001036 4.3e-27 125.6 80 78.8
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 1.3e-26 124.0 72 81.9
SEGI_37122 Sequoiadendron giganteum HOM05D000067 ORTHO05D001497 1.2e-24 117.5 71 80.3
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.5e-24 117.1 75 70.7
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 4.5e-24 115.5 115 51.3
Zm00001eb367010 Zea mays HOM05D003702 ORTHO05D004653 9.9e-24 114.4 72 72.2
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.9e-22 110.2 109 50.5
Os01g0683550 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 2.4e-22 109.8 74 64.9
SHI16230 Sapria himalayana HOM05D000105 ORTHO05D000023 7.4e-19 98.2 110 47.3
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 1.4e-17 94.0 53 84.9
SEGI_02363 Sequoiadendron giganteum HOM05D000572 ORTHO05D015315 2.4e-17 93.2 56 80.4
Zm00001eb335270 Zea mays HOM05D003702 ORTHO05D004653 4.0e-17 92.4 50 84.0
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 7.6e-16 88.2 46 91.3
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 4.2e-14 82.4 46 84.8
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 1.1e-11 74.3 91 44.0
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 1.7e-07 60.5 38 73.7
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 8.4e-07 58.2 32 81.2


User provided reference genes

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