Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 1.6e-280 968.8 484 100.0
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 7.4e-254 880.2 483 89.6
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 8.2e-253 876.7 484 88.6
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 8.2e-253 876.7 484 88.4
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 1.4e-252 875.9 484 89.3
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.4e-252 875.2 482 89.0
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 9.1e-252 873.2 483 88.8
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 1.2e-251 872.8 484 89.5
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 4.5e-251 870.9 483 88.2
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.9e-251 870.5 483 88.2
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 7.7e-251 870.2 483 88.4
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 7.7e-251 870.2 483 88.4
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.0e-250 869.8 484 88.8
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 1.3e-250 869.4 483 88.0
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.3e-250 869.4 460 93.9
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 1.7e-250 869.0 484 87.4
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 1.7e-250 869.0 484 88.0
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.2e-250 868.6 484 87.4
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.2e-250 868.6 484 87.6
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 5.0e-250 867.5 484 87.2
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 5.0e-250 867.5 484 86.0
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 5.0e-250 867.5 484 87.4
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 5.0e-250 867.5 483 87.6
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 6.5e-250 867.1 460 93.3
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 8.5e-250 866.7 484 88.4
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 8.5e-250 866.7 484 88.8
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 1.1e-249 866.3 460 93.3
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.1e-249 866.3 484 87.2
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 1.1e-249 866.3 484 86.4
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 1.4e-249 865.9 460 92.8
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 1.4e-249 865.9 484 89.5
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.4e-249 865.9 484 88.2
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 1.4e-249 865.9 484 87.6
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.9e-249 865.5 466 89.9
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.9e-249 865.5 483 87.2
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 1.9e-249 865.5 483 87.4
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 1.9e-249 865.5 484 88.0
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 1.9e-249 865.5 466 91.2
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 2.5e-249 865.1 484 87.6
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 2.5e-249 865.1 484 86.2
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 3.2e-249 864.8 476 88.4
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 4.2e-249 864.4 460 93.0
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 4.2e-249 864.4 484 89.3
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 4.2e-249 864.4 484 87.4
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 5.5e-249 864.0 489 87.5
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 7.2e-249 863.6 484 87.4
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 7.2e-249 863.6 483 87.8
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 7.2e-249 863.6 460 92.8
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 9.4e-249 863.2 483 88.0
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 9.4e-249 863.2 484 89.3
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 9.4e-249 863.2 466 91.0
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 9.4e-249 863.2 460 92.8
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 1.2e-248 862.8 460 92.8
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 1.2e-248 862.8 460 92.8
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.2e-248 862.8 460 92.8
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.2e-248 862.8 461 93.3
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.2e-248 862.8 460 92.8
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.6e-248 862.4 484 87.2
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.6e-248 862.4 481 87.5
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 2.1e-248 862.1 483 87.0
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 2.1e-248 862.1 460 92.6
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.1e-248 862.1 484 86.0
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 2.1e-248 862.1 484 87.2
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.7e-248 861.7 484 88.2
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 3.6e-248 861.3 483 87.0
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 6.1e-248 860.5 483 87.0
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 7.9e-248 860.1 460 91.1
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 7.9e-248 860.1 484 88.0
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.0e-247 859.8 483 87.2
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 1.0e-247 859.8 482 87.8
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 1.0e-247 859.8 484 87.2
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 1.0e-247 859.8 486 87.4
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 1.0e-247 859.8 484 87.8
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.0e-247 859.8 481 86.9
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.4e-247 859.4 483 87.0
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 1.8e-247 859.0 483 87.6
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 1.8e-247 859.0 460 92.4
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 2.3e-247 858.6 481 87.1
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 2.3e-247 858.6 484 87.0
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 3.0e-247 858.2 483 87.2
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 3.9e-247 857.8 462 92.6
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.9e-247 857.8 484 86.4
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 3.9e-247 857.8 478 87.2
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 3.9e-247 857.8 485 88.9
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 6.7e-247 857.1 485 88.0
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 6.7e-247 857.1 484 87.2
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 6.7e-247 857.1 487 88.5
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 8.8e-247 856.7 484 86.4
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 8.8e-247 856.7 483 87.6
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 8.8e-247 856.7 473 87.7
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 1.5e-246 855.9 483 87.4
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 1.5e-246 855.9 484 87.0
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 5.7e-246 854.0 483 87.6
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 5.7e-246 854.0 460 89.8
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 9.7e-246 853.2 482 86.7
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.3e-245 852.8 478 86.8
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 1.3e-245 852.8 463 91.6
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.3e-245 852.8 482 86.5
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 2.8e-245 851.7 453 91.4
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 2.8e-245 851.7 478 87.2
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 8.2e-245 850.1 482 86.9
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 8.2e-245 850.1 460 90.4
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 1.1e-244 849.7 437 91.8
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 1.4e-244 849.4 437 92.2
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 1.8e-244 849.0 483 86.5
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 9.1e-244 846.7 436 92.7
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 2.0e-243 845.5 459 90.8
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 4.5e-243 844.3 459 90.6
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 1.3e-242 842.8 439 90.9
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 3.2e-241 838.2 436 90.8
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.6e-240 835.9 476 87.0
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 4.7e-240 834.3 430 91.6
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.1e-236 823.2 451 89.1
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 1.8e-236 822.4 434 88.7
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 3.5e-235 818.1 433 88.0
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 6.1e-232 807.4 431 87.2
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 2.8e-229 798.5 407 92.9
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 7.0e-228 793.9 408 92.6
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 2.9e-226 788.5 406 92.1
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.1e-225 786.6 405 92.1
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 5.5e-225 784.3 407 90.7
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 2.1e-224 782.3 433 85.5
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 2.7e-219 765.4 428 82.2
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 1.1e-217 760.0 436 81.9
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 9.5e-217 756.9 421 83.4
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 3.4e-214 748.4 483 77.4
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 3.4e-214 748.4 384 92.4
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 3.3e-201 705.3 393 87.0
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 4.9e-197 691.4 476 75.8
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 8.1e-192 674.1 390 84.6
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.5e-182 643.3 346 88.7
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 2.6e-182 642.5 399 74.2
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 1.7e-178 629.8 342 91.2
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.2e-172 609.0 483 67.9
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 8.7e-170 600.9 315 90.5
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.8e-165 585.5 484 66.1
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.9e-164 583.2 483 65.8
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.5e-163 578.9 483 66.0
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 9.0e-159 564.3 331 85.8
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.2e-142 510.8 279 86.7
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.7e-136 490.3 351 70.9
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 2.3e-122 443.4 278 74.5
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.0e-109 401.4 203 93.6
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 5.4e-95 352.4 175 93.1
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.3e-93 347.1 207 81.2
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.9e-88 330.1 172 91.3
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.3e-85 321.2 169 90.5
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.3e-74 283.9 483 39.8
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 1.1e-71 275.0 146 89.7
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 1.1e-66 258.5 146 84.9
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 7.6e-65 252.3 161 83.2
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 3.0e-61 240.4 127 86.6
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 3.0e-61 240.4 127 90.6
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.4e-55 221.5 259 44.8
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.7e-53 214.5 144 80.6
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 1.3e-51 208.4 100 97.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 7.1e-47 192.6 102 89.2
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.9e-40 170.6 124 71.8
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 5.3e-34 149.8 102 74.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 1.7e-32 144.8 77 89.6
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 1.7e-32 144.8 77 89.6
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 9.7e-28 129.0 69 91.3
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 2.8e-27 127.5 196 36.7
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.8e-27 127.5 71 85.9
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 3.7e-27 127.1 105 61.9
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.2e-25 122.1 68 83.8
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.5e-25 121.7 65 87.7
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.5e-25 121.7 65 87.7
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.7e-24 118.2 66 84.8
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.8e-24 117.1 66 83.3
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.1e-20 105.5 67 70.1
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.3e-20 104.0 72 69.4
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 7.4e-20 102.8 65 73.8
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 3.6e-14 84.0 168 36.3
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 3.7e-11 73.9 69 56.5
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 4.1e-10 70.5 72 52.8
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 5.3e-10 70.1 70 54.3
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 1.3e-08 65.5 60 58.3


User provided reference genes

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